Wall clock time and date at job start Tue Mar 31 2020 18:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47010 * 2 1 4 4 N 1.29427 * 124.80345 * 89.95886 * 3 2 1 5 5 C 1.30947 * 117.36185 * 179.76948 * 4 3 2 6 6 C 1.50697 * 122.90637 * 180.30721 * 5 4 3 7 7 C 1.35665 * 114.19011 * 0.48168 * 5 4 3 8 8 C 1.46681 * 126.12985 * 179.82994 * 7 5 4 9 9 O 1.21685 * 120.00384 * 359.70810 * 8 7 5 10 10 N 1.34772 * 120.00046 * 179.71379 * 8 7 5 11 11 C 1.46501 * 120.00300 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.68272 * 32.01167 * 11 10 8 13 13 C 1.55486 * 110.75734 * 268.95452 * 11 10 8 14 14 C 1.55840 * 103.32800 * 241.51265 * 13 11 10 15 15 H 1.08999 * 116.12518 * 159.23550 * 14 13 11 16 16 C 1.55380 * 105.04563 * 288.04114 * 14 13 11 17 17 C 1.54857 * 103.48672 * 72.07616 * 16 14 13 18 18 C 1.55842 * 103.44500 * 359.87214 * 17 16 14 19 19 H 1.08998 * 115.56151 * 158.81155 * 18 17 16 20 20 N 1.50236 * 101.05090 * 33.02546 * 14 13 11 21 21 C 1.36937 * 130.84181 * 126.06700 * 20 14 13 22 22 H 1.08000 * 120.00075 * 162.58227 * 21 20 14 23 23 C 1.38805 * 119.99736 * 342.58608 * 21 20 14 24 24 N 1.31625 * 120.00374 * 338.04898 * 23 21 20 25 25 Si 1.86807 * 120.00216 * 158.05268 * 23 21 20 26 26 H 1.48494 * 109.47399 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.47090 * 59.99652 * 25 23 21 28 28 H 1.48507 * 109.46849 * 299.99856 * 25 23 21 29 29 S 1.70952 * 124.80372 * 269.99904 * 3 2 1 30 30 H 1.09002 * 109.47723 * 300.00137 * 1 2 3 31 31 H 1.09001 * 109.47695 * 59.99891 * 1 2 3 32 32 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47312 * 240.00202 * 2 1 3 34 34 H 1.08997 * 109.47256 * 119.99517 * 2 1 3 35 35 H 1.09007 * 109.47108 * 270.18714 * 6 5 4 36 36 H 1.08999 * 109.47129 * 30.19034 * 6 5 4 37 37 H 1.08996 * 109.47173 * 150.18926 * 6 5 4 38 38 H 0.97008 * 120.00028 * 359.97438 * 10 8 7 39 39 H 1.09000 * 110.60699 * 123.09518 * 13 11 10 40 40 H 1.09009 * 110.89077 * 0.06675 * 13 11 10 41 41 H 1.09006 * 110.71760 * 313.52207 * 16 14 13 42 42 H 1.09000 * 110.50036 * 190.52497 * 16 14 13 43 43 H 1.09001 * 110.62073 * 241.38459 * 17 16 14 44 44 H 1.09003 * 110.62265 * 118.36501 * 17 16 14 45 45 H 0.97002 * 119.99712 * 353.96898 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2778 2.1176 1.0627 5 6 2.7151 3.3402 0.8932 6 6 3.0464 4.2578 2.0417 7 6 2.8405 3.7105 -0.4059 8 6 3.3017 5.0151 -0.8927 9 8 3.6092 5.8861 -0.1005 10 7 3.3848 5.2492 -2.2173 11 6 3.8448 6.5524 -2.7035 12 1 4.5707 6.9856 -2.0154 13 6 2.6441 7.5180 -2.9119 14 6 2.6974 7.8336 -4.4371 15 1 1.7732 8.1999 -4.8840 16 6 3.9352 8.7559 -4.6151 17 6 5.1331 7.7961 -4.4103 18 6 4.4529 6.4218 -4.1324 19 1 5.0748 5.5446 -4.3111 20 7 3.2189 6.5343 -4.9820 21 6 2.7247 5.7094 -5.9570 22 1 3.3647 4.9685 -6.4129 23 6 1.4014 5.8257 -6.3593 24 7 0.5172 6.3847 -5.5604 25 14 0.8750 5.1886 -8.0346 26 1 -0.5781 5.4303 -8.2220 27 1 1.1488 3.7314 -8.1185 28 1 1.6359 5.8971 -9.0950 29 16 2.3575 2.3408 -1.4037 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.1579 4.8231 2.3231 36 1 3.3859 3.6671 2.8925 37 1 3.8351 4.9471 1.7401 38 1 3.1399 4.5548 -2.8489 39 1 2.7775 8.4278 -2.3266 40 1 1.7040 7.0307 -2.6531 41 1 3.9410 9.5434 -3.8614 42 1 3.9522 9.1826 -5.6179 43 1 5.7328 8.1077 -3.5551 44 1 5.7442 7.7470 -5.3117 45 1 0.7694 6.6360 -4.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098026364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:07 Heat of formation + Delta-G solvation = 39.830684 kcal Electronic energy + Delta-G solvation = -27210.037197 eV Core-core repulsion = 23548.063522 eV Total energy + Delta-G solvation = -3661.973675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38646 -39.68736 -38.33230 -34.45101 -33.95907 -32.80717 -30.94154 -29.39459 -29.12344 -28.54471 -27.22248 -25.60780 -24.02384 -22.50253 -22.02528 -20.75938 -19.98684 -19.37541 -18.70434 -17.91748 -17.65344 -16.72566 -15.84019 -15.51748 -15.00916 -14.68081 -14.51877 -14.20005 -13.91946 -13.75187 -13.66460 -13.56105 -13.28963 -13.03628 -12.57807 -12.40326 -12.07106 -11.89931 -11.82271 -11.62520 -11.43445 -11.41945 -11.30932 -10.81717 -10.74355 -10.66607 -10.44854 -10.12929 -9.98974 -9.88093 -9.74503 -9.50701 -9.45210 -9.37586 -8.84447 -8.71583 -8.49335 -7.08339 -6.16678 -3.23178 0.24331 1.16107 1.58436 2.44562 3.32311 3.43208 3.44075 3.48000 3.65327 3.86083 4.45538 4.63209 4.86786 4.90408 4.92566 4.96583 5.14318 5.27156 5.31563 5.43585 5.47712 5.53220 5.63295 5.69604 5.69927 5.78479 5.79612 5.86517 5.92802 5.93019 5.95438 6.04420 6.18482 6.26078 6.34025 6.42231 6.50259 6.59769 6.74531 6.84712 7.02671 7.16349 7.48234 7.56959 7.82809 8.30397 8.41355 8.87696 9.69156 10.37684 11.19716 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.004209 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.764977 B = 6650.515961 C = 8533.540641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.055 3.945 4 N -0.479 5.479 5 C 0.142 3.858 6 C -0.086 4.086 7 C -0.295 4.295 8 C 0.593 3.407 9 O -0.535 6.535 10 N -0.698 5.698 11 C 0.129 3.871 12 H 0.085 0.915 13 C -0.139 4.139 14 C 0.140 3.860 15 H 0.108 0.892 16 C -0.134 4.134 17 C -0.125 4.125 18 C 0.125 3.875 19 H 0.090 0.910 20 N -0.594 5.594 21 C -0.322 4.322 22 H 0.066 0.934 23 C -0.025 4.025 24 N -0.922 5.922 25 Si 1.067 2.933 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.294 1.294 29 S 0.177 5.823 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -8.360 9.881 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.220 4.220 4 N -0.194 5.194 5 C 0.004 3.996 6 C -0.145 4.145 7 C -0.419 4.419 8 C 0.378 3.622 9 O -0.415 6.415 10 N -0.347 5.347 11 C 0.023 3.977 12 H 0.103 0.897 13 C -0.179 4.179 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.174 4.174 17 C -0.165 4.165 18 C 0.017 3.983 19 H 0.108 0.892 20 N -0.316 5.316 21 C -0.449 4.449 22 H 0.083 0.917 23 C -0.227 4.227 24 N -0.564 5.564 25 Si 0.896 3.104 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.221 1.221 29 S 0.435 5.565 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.069 -8.462 8.549 12.414 hybrid contribution 1.298 0.228 1.390 1.915 sum 4.367 -8.234 9.939 13.626 Atomic orbital electron populations 1.21791 0.93162 1.02732 1.03031 1.20287 0.97004 0.87200 1.04461 1.27414 1.01186 1.01829 0.91570 1.66063 1.15935 1.05981 1.31411 1.20623 0.94827 0.90510 0.93629 1.20625 1.03596 0.96949 0.93355 1.25595 1.18111 1.00974 0.97224 1.16686 0.77832 0.84738 0.82950 1.90733 1.50815 1.44967 1.55016 1.45911 1.66121 1.17118 1.05533 1.22752 0.96435 0.82073 0.96451 0.89685 1.23526 0.97844 0.97994 0.98582 1.22942 0.96189 0.86707 0.90838 0.87393 1.22895 0.96982 0.97167 1.00333 1.22875 0.97165 0.96327 1.00141 1.23209 0.90617 0.96138 0.88315 0.89161 1.46561 1.24163 1.20121 1.40803 1.19715 0.95680 1.16504 1.13013 0.91666 1.25721 0.90922 1.00807 1.05232 1.70775 1.34935 1.42648 1.08020 0.83491 0.76132 0.75424 0.75310 1.21055 1.22084 1.22143 1.84225 1.57908 1.03796 1.10585 0.91883 0.92030 0.91184 0.89327 0.88598 0.90297 0.91055 0.88160 0.76278 0.92165 0.91807 0.92690 0.92449 0.92581 0.92092 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.15 0.37 -0.86 16 2 C -0.05 -0.43 6.51 -27.88 -0.18 -0.61 16 3 C 0.06 0.70 6.64 -13.29 -0.09 0.61 16 4 N -0.48 -6.94 10.50 -7.70 -0.08 -7.02 16 5 C 0.14 2.19 6.79 -83.89 -0.57 1.62 16 6 C -0.09 -1.17 9.69 36.00 0.35 -0.82 16 7 C -0.29 -4.79 6.48 -37.10 -0.24 -5.03 16 8 C 0.59 10.75 7.78 -12.85 -0.10 10.65 16 9 O -0.54 -10.50 13.92 5.20 0.07 -10.43 16 10 N -0.70 -12.81 5.09 -52.37 -0.27 -13.08 16 11 C 0.13 2.41 2.82 -65.09 -0.18 2.23 16 12 H 0.09 1.55 7.23 -51.93 -0.38 1.17 16 13 C -0.14 -2.78 6.12 -23.89 -0.15 -2.93 16 14 C 0.14 3.05 3.77 -63.06 -0.24 2.81 16 15 H 0.11 2.66 6.55 -51.93 -0.34 2.32 16 16 C -0.13 -2.46 6.42 -24.49 -0.16 -2.62 16 17 C -0.13 -2.15 6.44 -24.24 -0.16 -2.30 16 18 C 0.13 2.41 5.06 -62.80 -0.32 2.09 16 19 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 20 N -0.59 -13.82 2.83 -146.10 -0.41 -14.23 16 21 C -0.32 -8.42 10.42 -15.06 -0.16 -8.58 16 22 H 0.07 1.70 7.92 -52.49 -0.42 1.28 16 23 C -0.03 -0.69 5.34 -17.43 -0.09 -0.78 16 24 N -0.92 -26.52 12.67 55.49 0.70 -25.81 16 25 Si 1.07 24.35 29.97 -169.99 -5.09 19.25 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 S 0.18 2.43 22.31 -107.50 -2.40 0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.47 6.01 -51.93 -0.31 1.16 16 38 H 0.40 7.52 7.84 -40.82 -0.32 7.20 16 39 H 0.06 1.10 7.80 -51.93 -0.41 0.69 16 40 H 0.06 1.42 7.59 -51.92 -0.39 1.02 16 41 H 0.05 0.89 7.80 -51.93 -0.41 0.48 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.27 7.73 5.66 -40.82 -0.23 7.50 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -30.57 372.44 -10.41 -40.97 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.63 Total: 9.21 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.91 Total: -4.51 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.06 Total: -60.14 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.09 Total: 19.25 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.40 Total: 0.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.57 -10.41 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098026364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.803 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds