Wall clock time and date at job start Tue Mar 31 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47010 * 2 1 4 4 N 1.29427 * 124.80345 * 89.95886 * 3 2 1 5 5 C 1.30947 * 117.36185 * 179.76948 * 4 3 2 6 6 C 1.50697 * 122.90637 * 180.30721 * 5 4 3 7 7 C 1.35665 * 114.19011 * 0.48168 * 5 4 3 8 8 C 1.46681 * 126.12985 * 179.82994 * 7 5 4 9 9 O 1.21685 * 120.00384 * 359.70810 * 8 7 5 10 10 N 1.34772 * 120.00046 * 179.71379 * 8 7 5 11 11 C 1.46501 * 120.00300 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.68272 * 32.01167 * 11 10 8 13 13 C 1.55486 * 110.75734 * 268.95452 * 11 10 8 14 14 C 1.55840 * 103.32800 * 241.51265 * 13 11 10 15 15 H 1.08999 * 116.12518 * 159.23550 * 14 13 11 16 16 C 1.55380 * 105.04563 * 288.04114 * 14 13 11 17 17 C 1.54857 * 103.48672 * 72.07616 * 16 14 13 18 18 C 1.55842 * 103.44500 * 359.87214 * 17 16 14 19 19 H 1.08998 * 115.56151 * 158.81155 * 18 17 16 20 20 N 1.50236 * 101.05090 * 33.02546 * 14 13 11 21 21 C 1.36937 * 130.84181 * 126.06700 * 20 14 13 22 22 H 1.08000 * 120.00075 * 162.58227 * 21 20 14 23 23 C 1.38805 * 119.99736 * 342.58608 * 21 20 14 24 24 N 1.31625 * 120.00374 * 338.04898 * 23 21 20 25 25 Si 1.86807 * 120.00216 * 158.05268 * 23 21 20 26 26 H 1.48494 * 109.47399 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.47090 * 59.99652 * 25 23 21 28 28 H 1.48507 * 109.46849 * 299.99856 * 25 23 21 29 29 S 1.70952 * 124.80372 * 269.99904 * 3 2 1 30 30 H 1.09002 * 109.47723 * 300.00137 * 1 2 3 31 31 H 1.09001 * 109.47695 * 59.99891 * 1 2 3 32 32 H 1.09001 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47312 * 240.00202 * 2 1 3 34 34 H 1.08997 * 109.47256 * 119.99517 * 2 1 3 35 35 H 1.09007 * 109.47108 * 270.18714 * 6 5 4 36 36 H 1.08999 * 109.47129 * 30.19034 * 6 5 4 37 37 H 1.08996 * 109.47173 * 150.18926 * 6 5 4 38 38 H 0.97008 * 120.00028 * 359.97438 * 10 8 7 39 39 H 1.09000 * 110.60699 * 123.09518 * 13 11 10 40 40 H 1.09009 * 110.89077 * 0.06675 * 13 11 10 41 41 H 1.09006 * 110.71760 * 313.52207 * 16 14 13 42 42 H 1.09000 * 110.50036 * 190.52497 * 16 14 13 43 43 H 1.09001 * 110.62073 * 241.38459 * 17 16 14 44 44 H 1.09003 * 110.62265 * 118.36501 * 17 16 14 45 45 H 0.97002 * 119.99712 * 353.96898 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2778 2.1176 1.0627 5 6 2.7151 3.3402 0.8932 6 6 3.0464 4.2578 2.0417 7 6 2.8405 3.7105 -0.4059 8 6 3.3017 5.0151 -0.8927 9 8 3.6092 5.8861 -0.1005 10 7 3.3848 5.2492 -2.2173 11 6 3.8448 6.5524 -2.7035 12 1 4.5707 6.9856 -2.0154 13 6 2.6441 7.5180 -2.9119 14 6 2.6974 7.8336 -4.4371 15 1 1.7732 8.1999 -4.8840 16 6 3.9352 8.7559 -4.6151 17 6 5.1331 7.7961 -4.4103 18 6 4.4529 6.4218 -4.1324 19 1 5.0748 5.5446 -4.3111 20 7 3.2189 6.5343 -4.9820 21 6 2.7247 5.7094 -5.9570 22 1 3.3647 4.9685 -6.4129 23 6 1.4014 5.8257 -6.3593 24 7 0.5172 6.3847 -5.5604 25 14 0.8750 5.1886 -8.0346 26 1 -0.5781 5.4303 -8.2220 27 1 1.1488 3.7314 -8.1185 28 1 1.6359 5.8971 -9.0950 29 16 2.3575 2.3408 -1.4037 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.1579 4.8231 2.3231 36 1 3.3859 3.6671 2.8925 37 1 3.8351 4.9471 1.7401 38 1 3.1399 4.5548 -2.8489 39 1 2.7775 8.4278 -2.3266 40 1 1.7040 7.0307 -2.6531 41 1 3.9410 9.5434 -3.8614 42 1 3.9522 9.1826 -5.6179 43 1 5.7328 8.1077 -3.5551 44 1 5.7442 7.7470 -5.3117 45 1 0.7694 6.6360 -4.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098026364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:05 Heat of formation + Delta-G solvation = 21.746794 kcal Electronic energy + Delta-G solvation = -27210.821373 eV Core-core repulsion = 23548.063522 eV Total energy + Delta-G solvation = -3662.757851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69979 -41.07871 -39.76910 -35.54777 -35.27577 -34.67430 -31.97291 -30.94544 -30.75986 -30.07123 -28.60325 -26.50395 -25.92817 -23.87109 -22.92583 -22.19244 -21.65333 -20.82098 -20.17467 -19.51279 -19.04439 -18.01127 -17.24351 -16.72821 -16.54009 -16.03911 -15.65808 -15.60966 -15.38048 -15.34056 -15.06476 -14.80691 -14.49640 -14.15215 -13.97631 -13.52799 -13.48612 -13.33270 -12.99848 -12.92594 -12.62817 -12.58971 -12.44210 -12.41955 -12.20962 -12.12507 -11.96749 -11.93619 -11.59259 -11.38401 -11.28602 -11.04343 -10.76214 -10.67830 -10.62092 -10.14487 -9.82092 -8.99563 -8.25197 -5.26408 -0.89482 0.05992 0.47160 1.26842 1.59075 1.66565 1.84235 1.96891 2.06495 2.63718 2.87377 3.18988 3.36148 3.64300 3.73014 3.83335 3.88839 3.98474 4.11259 4.17803 4.23388 4.25395 4.33291 4.44449 4.51134 4.52502 4.64588 4.65755 4.74244 4.77948 4.81094 4.85804 4.93826 5.00167 5.02371 5.04603 5.20550 5.26170 5.28794 5.34557 5.43998 5.54915 5.65282 6.29306 6.33430 6.49169 6.85270 6.97868 7.69783 8.45951 9.12906 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.004209 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.764977 B = 6650.515961 C = 8533.540641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.075 3.925 4 N -0.495 5.495 5 C 0.145 3.855 6 C -0.084 4.084 7 C -0.331 4.331 8 C 0.594 3.406 9 O -0.555 6.555 10 N -0.701 5.701 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.130 4.130 14 C 0.131 3.869 15 H 0.070 0.930 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.124 3.876 19 H 0.097 0.903 20 N -0.616 5.616 21 C -0.317 4.317 22 H 0.064 0.936 23 C -0.079 4.079 24 N -0.957 5.957 25 Si 1.113 2.887 26 H -0.298 1.298 27 H -0.274 1.274 28 H -0.285 1.285 29 S 0.178 5.822 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -9.745 10.390 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.200 4.200 4 N -0.210 5.210 5 C 0.006 3.994 6 C -0.142 4.142 7 C -0.455 4.455 8 C 0.380 3.620 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.032 3.968 12 H 0.116 0.884 13 C -0.170 4.170 14 C 0.024 3.976 15 H 0.088 0.912 16 C -0.165 4.165 17 C -0.154 4.154 18 C 0.017 3.983 19 H 0.115 0.885 20 N -0.340 5.340 21 C -0.446 4.446 22 H 0.082 0.918 23 C -0.274 4.274 24 N -0.601 5.601 25 Si 0.939 3.061 26 H -0.224 1.224 27 H -0.200 1.200 28 H -0.212 1.212 29 S 0.437 5.563 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.233 0.767 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.436 -9.847 9.065 14.101 hybrid contribution 0.881 0.577 1.313 1.683 sum 5.317 -9.270 10.378 14.897 Atomic orbital electron populations 1.21797 0.92518 1.04198 1.02003 1.20584 0.97334 0.84826 1.06415 1.28207 0.98479 1.02832 0.90502 1.66167 1.17170 1.05808 1.31902 1.20950 0.93655 0.91018 0.93774 1.20624 1.03307 0.96798 0.93519 1.25444 1.20728 1.01193 0.98152 1.16897 0.77205 0.85337 0.82531 1.90707 1.51773 1.45902 1.55268 1.45915 1.66412 1.16884 1.05738 1.22675 0.95738 0.82044 0.96380 0.88365 1.23417 0.97023 0.98920 0.97673 1.22894 0.96155 0.87185 0.91324 0.91197 1.22823 0.95433 0.97335 1.00867 1.22826 0.96659 0.94161 1.01746 1.23416 0.89365 0.97833 0.87652 0.88493 1.46742 1.25401 1.20584 1.41231 1.19941 0.95475 1.16133 1.13039 0.91841 1.26884 0.91481 1.01447 1.07589 1.70863 1.35756 1.45441 1.08022 0.82859 0.74964 0.76142 0.72184 1.22429 1.19998 1.21156 1.84184 1.58032 1.03171 1.10943 0.93002 0.92976 0.88514 0.86987 0.86958 0.89976 0.89076 0.89374 0.76677 0.90257 0.95049 0.90034 0.93168 0.89408 0.91567 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.05 -0.76 6.51 29.85 0.19 -0.56 16 3 C 0.07 1.77 6.64 88.46 0.59 2.36 16 4 N -0.50 -13.74 10.50 -178.28 -1.87 -15.61 16 5 C 0.14 4.39 6.79 42.09 0.29 4.67 16 6 C -0.08 -2.22 9.69 71.24 0.69 -1.53 16 7 C -0.33 -10.78 6.48 23.88 0.15 -10.63 16 8 C 0.59 21.71 7.78 86.45 0.67 22.38 16 9 O -0.56 -21.81 13.92 -4.30 -0.06 -21.87 16 10 N -0.70 -25.93 5.09 -437.83 -2.23 -28.16 16 11 C 0.14 5.04 2.82 46.83 0.13 5.17 16 12 H 0.10 3.38 7.23 -2.39 -0.02 3.36 16 13 C -0.13 -5.24 6.12 32.43 0.20 -5.04 16 14 C 0.13 5.78 3.77 46.06 0.17 5.95 16 15 H 0.07 3.62 6.55 -2.39 -0.02 3.60 16 16 C -0.13 -4.40 6.42 32.05 0.21 -4.19 16 17 C -0.11 -3.62 6.44 32.21 0.21 -3.41 16 18 C 0.12 4.63 5.06 46.23 0.23 4.86 16 19 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 20 N -0.62 -28.82 2.83 -616.13 -1.75 -30.57 16 21 C -0.32 -16.78 10.42 84.03 0.88 -15.91 16 22 H 0.06 3.30 7.92 -2.91 -0.02 3.28 16 23 C -0.08 -4.32 5.34 84.86 0.45 -3.86 16 24 N -0.96 -57.06 12.67 21.65 0.27 -56.79 16 25 Si 1.11 49.77 29.97 68.60 2.06 51.83 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 S 0.18 4.81 22.31 -56.49 -1.26 3.55 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.58 6.01 -2.39 -0.01 2.56 16 38 H 0.40 15.20 7.84 -92.70 -0.73 14.47 16 39 H 0.08 2.84 7.80 -2.39 -0.02 2.82 16 40 H 0.03 1.44 7.59 -2.38 -0.02 1.43 16 41 H 0.08 2.42 7.80 -2.38 -0.02 2.40 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.09 2.27 7.82 -2.39 -0.02 2.25 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.26 15.58 5.66 -92.71 -0.52 15.06 16 Total: -1.00 -67.67 372.44 1.47 -66.20 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.53 Total: 32.53 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.78 Total: -1.11 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -5.57 Total: -131.12 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.06 Total: 51.83 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.26 Total: 3.55 kcal Total: -67.67 1.47 -66.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098026364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.942 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds