Wall clock time and date at job start Tue Mar 31 2020 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 C 1.50702 * 109.47475 * 119.99644 * 2 1 3 5 5 S 1.70949 * 125.58598 * 305.26677 * 4 2 1 6 6 C 1.70767 * 91.13030 * 180.02562 * 5 4 2 7 7 N 1.28652 * 110.56034 * 359.97438 * 6 5 4 8 8 C 1.33561 * 115.76639 * 0.02562 * 7 6 5 9 9 C 1.47262 * 123.14243 * 179.97438 * 8 7 6 10 10 O 1.21639 * 120.00223 * 174.57528 * 9 8 7 11 11 N 1.34773 * 119.99922 * 354.57035 * 9 8 7 12 12 C 1.46510 * 119.99856 * 180.02562 * 11 9 8 13 13 H 1.08993 * 110.55744 * 36.45085 * 12 11 9 14 14 C 1.54848 * 110.62372 * 273.54620 * 12 11 9 15 15 C 1.55846 * 103.44711 * 241.51030 * 14 12 11 16 16 H 1.08996 * 115.56272 * 158.81230 * 15 14 12 17 17 C 1.55849 * 105.06558 * 288.18309 * 15 14 12 18 18 C 1.54851 * 103.44882 * 71.81795 * 17 15 14 19 19 C 1.55846 * 103.44528 * 0.02562 * 18 17 15 20 20 H 1.08994 * 116.13020 * 159.14767 * 19 18 17 21 21 N 1.50237 * 101.05165 * 32.93371 * 19 18 17 22 22 C 1.36940 * 130.84070 * 126.01244 * 21 19 18 23 23 H 1.07998 * 119.99539 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00007 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00329 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47288 * 89.99670 * 26 24 22 28 28 H 1.48502 * 109.46710 * 210.00005 * 26 24 22 29 29 H 1.48500 * 109.46964 * 329.99884 * 26 24 22 30 30 H 1.08999 * 109.46809 * 299.99817 * 1 2 3 31 31 H 1.08998 * 109.47017 * 60.00390 * 1 2 3 32 32 H 1.09003 * 109.46487 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47637 * 239.99849 * 2 1 3 34 34 H 1.09000 * 109.47579 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46817 * 299.99732 * 3 2 1 36 36 H 1.09004 * 109.47411 * 59.99694 * 3 2 1 37 37 H 1.07993 * 124.72331 * 180.02562 * 6 5 4 38 38 H 0.96999 * 120.00260 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.63186 * 359.97438 * 14 12 11 40 40 H 1.09000 * 110.62420 * 122.86744 * 14 12 11 41 41 H 1.08995 * 110.62748 * 190.31937 * 17 15 14 42 42 H 1.09001 * 110.62088 * 313.33167 * 17 15 14 43 43 H 1.09001 * 110.62758 * 241.51540 * 18 17 15 44 44 H 1.08996 * 110.76024 * 118.55732 * 18 17 15 45 45 H 0.97000 * 119.99740 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 16 1.6073 -0.3300 2.8420 6 6 2.6033 -1.5834 3.4363 7 7 3.1798 -2.2008 2.4660 8 6 2.8934 -1.7528 1.2409 9 6 3.4624 -2.3392 0.0157 10 8 3.0876 -1.9520 -1.0748 11 7 4.3986 -3.3048 0.1027 12 6 4.9651 -3.8878 -1.1162 13 1 5.0733 -3.1275 -1.8896 14 6 4.0856 -5.0581 -1.6208 15 6 5.0434 -6.2858 -1.5552 16 1 4.5569 -7.2604 -1.5186 17 6 6.0597 -6.0691 -2.7167 18 6 6.9392 -4.8987 -2.2120 19 6 6.3349 -4.5680 -0.8141 20 1 6.9856 -4.0296 -0.1251 21 7 5.8877 -5.9299 -0.3642 22 6 6.1645 -6.6310 0.7791 23 1 6.8047 -6.2004 1.5349 24 6 5.6222 -7.8949 0.9666 25 7 4.8416 -8.4194 0.0458 26 14 5.9992 -8.8509 2.5266 27 1 4.9817 -8.5328 3.5603 28 1 5.9696 -10.3066 2.2343 29 1 7.3461 -8.4734 3.0252 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.7307 -1.8247 4.4812 38 1 4.6972 -3.6139 0.9723 39 1 3.2282 -5.2052 -0.9640 40 1 3.7576 -4.8783 -2.6446 41 1 6.6627 -6.9638 -2.8712 42 1 5.5407 -5.7915 -3.6342 43 1 6.8563 -4.0407 -2.8792 44 1 7.9793 -5.2103 -2.1165 45 1 4.4629 -9.3028 0.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098196207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:10 Heat of formation + Delta-G solvation = 45.553105 kcal Electronic energy + Delta-G solvation = -27438.934864 eV Core-core repulsion = 23777.209332 eV Total energy + Delta-G solvation = -3661.725532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54226 -39.27156 -37.86794 -35.86365 -33.68667 -32.48253 -29.98557 -29.08682 -28.80045 -27.81877 -27.31783 -25.59027 -24.17668 -22.81536 -21.56001 -20.87483 -19.81464 -19.36118 -18.57156 -17.98688 -16.97997 -16.54855 -15.82279 -15.43297 -15.16385 -14.77280 -14.39168 -14.09017 -14.02325 -13.82949 -13.65415 -13.37175 -13.16598 -12.88705 -12.40224 -12.11378 -12.01487 -11.80885 -11.61022 -11.38463 -11.25150 -11.17165 -11.06903 -10.90949 -10.86782 -10.48189 -10.33715 -10.07344 -9.88529 -9.84179 -9.54942 -9.50452 -9.21132 -9.11528 -9.01178 -8.92972 -8.38996 -6.91937 -5.71228 -3.10020 0.50347 1.16517 1.57540 2.09933 3.39362 3.44159 3.45872 3.57991 3.68316 4.17897 4.44046 4.57922 4.77007 5.01083 5.03391 5.14983 5.30647 5.38801 5.42573 5.43963 5.63694 5.67533 5.72222 5.74767 5.85408 5.89994 5.93545 6.07333 6.08415 6.11825 6.16515 6.27012 6.37247 6.47072 6.51920 6.64792 6.77872 6.85512 6.97647 7.14008 7.33612 7.42371 7.51081 7.82072 8.06314 8.20068 8.60648 9.10489 9.73899 10.54300 11.37988 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.003734 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.222544 B = 7496.823151 C = 8831.799766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.170 4.170 5 S 0.181 5.819 6 C -0.005 4.005 7 N -0.431 5.431 8 C 0.001 3.999 9 C 0.590 3.410 10 O -0.544 6.544 11 N -0.683 5.683 12 C 0.127 3.873 13 H 0.079 0.921 14 C -0.142 4.142 15 C 0.154 3.846 16 H 0.153 0.847 17 C -0.138 4.138 18 C -0.127 4.127 19 C 0.126 3.874 20 H 0.088 0.912 21 N -0.590 5.590 22 C -0.212 4.212 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.915 3.085 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.138 0.862 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.203 0.797 38 H 0.411 0.589 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 17.848 2.339 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.294 4.294 5 S 0.437 5.563 6 C -0.305 4.305 7 N -0.144 5.144 8 C -0.133 4.133 9 C 0.373 3.627 10 O -0.424 6.424 11 N -0.331 5.331 12 C 0.021 3.979 13 H 0.097 0.903 14 C -0.182 4.182 15 C 0.047 3.953 16 H 0.170 0.830 17 C -0.177 4.177 18 C -0.167 4.167 19 C 0.017 3.983 20 H 0.106 0.894 21 N -0.311 5.311 22 C -0.340 4.340 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.219 0.781 38 H 0.248 0.752 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.871 18.043 2.416 19.458 hybrid contribution 0.712 -1.128 0.751 1.530 sum -6.160 16.916 3.167 18.279 Atomic orbital electron populations 1.21898 0.93953 1.02321 1.01903 1.20302 0.95788 0.95791 0.95303 1.21863 1.01517 0.94551 1.01873 1.25634 1.01878 1.00872 1.01037 1.82681 1.43801 1.33200 0.96622 1.28336 1.00350 0.98153 1.03643 1.66989 1.22462 1.26865 0.98098 1.20513 1.02180 0.98072 0.92569 1.17030 0.79660 0.79726 0.86286 1.90606 1.61496 1.62889 1.27413 1.45895 1.39205 1.36532 1.11444 1.22738 0.95495 0.94351 0.85324 0.90282 1.23462 0.98919 0.96879 0.98976 1.23771 0.89539 0.98339 0.83650 0.82994 1.23045 0.98981 0.97288 0.98395 1.22862 0.99180 0.97870 0.96744 1.23164 0.92408 0.88492 0.94223 0.89423 1.46542 1.54019 1.12566 1.17930 1.19001 1.24350 0.96968 0.93682 0.90410 1.24682 1.00077 0.97333 0.98435 1.69459 1.36634 1.17097 1.33617 0.86066 0.77749 0.79219 0.82416 1.21712 1.21740 1.20798 0.92948 0.91587 0.92243 0.84505 0.92394 0.91635 0.92972 0.78060 0.75235 0.92296 0.92734 0.92598 0.93297 0.92991 0.92405 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.05 37.16 0.34 -1.09 16 2 C -0.05 -0.62 3.12 -91.77 -0.29 -0.91 16 3 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 4 C -0.17 -2.25 5.03 -35.39 -0.18 -2.42 16 5 S 0.18 1.76 22.44 -107.50 -2.41 -0.65 16 6 C 0.00 -0.06 12.17 51.43 0.63 0.57 16 7 N -0.43 -6.64 10.13 -12.36 -0.13 -6.77 16 8 C 0.00 0.02 6.70 -84.53 -0.57 -0.55 16 9 C 0.59 10.88 7.78 -12.59 -0.10 10.78 16 10 O -0.54 -10.62 13.58 5.24 0.07 -10.55 16 11 N -0.68 -13.02 5.09 -52.49 -0.27 -13.29 16 12 C 0.13 2.47 2.73 -65.40 -0.18 2.29 16 13 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 14 C -0.14 -3.00 6.22 -24.24 -0.15 -3.15 16 15 C 0.15 3.57 4.72 -62.78 -0.30 3.27 16 16 H 0.15 4.05 5.52 -51.93 -0.29 3.76 16 17 C -0.14 -2.75 6.44 -24.23 -0.16 -2.91 16 18 C -0.13 -2.33 6.44 -24.24 -0.16 -2.48 16 19 C 0.13 2.52 5.04 -62.77 -0.32 2.21 16 20 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 21 N -0.59 -14.33 2.99 -145.76 -0.44 -14.77 16 22 C -0.21 -5.68 10.59 -15.06 -0.16 -5.84 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.92 -26.23 10.47 55.49 0.58 -25.65 16 26 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.45 7.84 -51.93 -0.41 0.04 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 2.04 4.94 -51.93 -0.26 1.78 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.41 8.11 8.15 -40.82 -0.33 7.78 16 39 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 40 H 0.05 1.06 7.82 -51.93 -0.41 0.66 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 43 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -30.46 370.85 -10.01 -40.47 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.65 Total: 10.38 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.34 Total: -1.63 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.25 Total: -60.46 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.41 Total: -0.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.46 -10.01 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098196207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.021 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds