Wall clock time and date at job start Tue Mar 31 2020 18:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 C 1.50702 * 109.47475 * 119.99644 * 2 1 3 5 5 S 1.70949 * 125.58598 * 305.26677 * 4 2 1 6 6 C 1.70767 * 91.13030 * 180.02562 * 5 4 2 7 7 N 1.28652 * 110.56034 * 359.97438 * 6 5 4 8 8 C 1.33561 * 115.76639 * 0.02562 * 7 6 5 9 9 C 1.47262 * 123.14243 * 179.97438 * 8 7 6 10 10 O 1.21639 * 120.00223 * 174.57528 * 9 8 7 11 11 N 1.34773 * 119.99922 * 354.57035 * 9 8 7 12 12 C 1.46510 * 119.99856 * 180.02562 * 11 9 8 13 13 H 1.08993 * 110.55744 * 36.45085 * 12 11 9 14 14 C 1.54848 * 110.62372 * 273.54620 * 12 11 9 15 15 C 1.55846 * 103.44711 * 241.51030 * 14 12 11 16 16 H 1.08996 * 115.56272 * 158.81230 * 15 14 12 17 17 C 1.55849 * 105.06558 * 288.18309 * 15 14 12 18 18 C 1.54851 * 103.44882 * 71.81795 * 17 15 14 19 19 C 1.55846 * 103.44528 * 0.02562 * 18 17 15 20 20 H 1.08994 * 116.13020 * 159.14767 * 19 18 17 21 21 N 1.50237 * 101.05165 * 32.93371 * 19 18 17 22 22 C 1.36940 * 130.84070 * 126.01244 * 21 19 18 23 23 H 1.07998 * 119.99539 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00007 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00329 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47288 * 89.99670 * 26 24 22 28 28 H 1.48502 * 109.46710 * 210.00005 * 26 24 22 29 29 H 1.48500 * 109.46964 * 329.99884 * 26 24 22 30 30 H 1.08999 * 109.46809 * 299.99817 * 1 2 3 31 31 H 1.08998 * 109.47017 * 60.00390 * 1 2 3 32 32 H 1.09003 * 109.46487 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47637 * 239.99849 * 2 1 3 34 34 H 1.09000 * 109.47579 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46817 * 299.99732 * 3 2 1 36 36 H 1.09004 * 109.47411 * 59.99694 * 3 2 1 37 37 H 1.07993 * 124.72331 * 180.02562 * 6 5 4 38 38 H 0.96999 * 120.00260 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.63186 * 359.97438 * 14 12 11 40 40 H 1.09000 * 110.62420 * 122.86744 * 14 12 11 41 41 H 1.08995 * 110.62748 * 190.31937 * 17 15 14 42 42 H 1.09001 * 110.62088 * 313.33167 * 17 15 14 43 43 H 1.09001 * 110.62758 * 241.51540 * 18 17 15 44 44 H 1.08996 * 110.76024 * 118.55732 * 18 17 15 45 45 H 0.97000 * 119.99740 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 16 1.6073 -0.3300 2.8420 6 6 2.6033 -1.5834 3.4363 7 7 3.1798 -2.2008 2.4660 8 6 2.8934 -1.7528 1.2409 9 6 3.4624 -2.3392 0.0157 10 8 3.0876 -1.9520 -1.0748 11 7 4.3986 -3.3048 0.1027 12 6 4.9651 -3.8878 -1.1162 13 1 5.0733 -3.1275 -1.8896 14 6 4.0856 -5.0581 -1.6208 15 6 5.0434 -6.2858 -1.5552 16 1 4.5569 -7.2604 -1.5186 17 6 6.0597 -6.0691 -2.7167 18 6 6.9392 -4.8987 -2.2120 19 6 6.3349 -4.5680 -0.8141 20 1 6.9856 -4.0296 -0.1251 21 7 5.8877 -5.9299 -0.3642 22 6 6.1645 -6.6310 0.7791 23 1 6.8047 -6.2004 1.5349 24 6 5.6222 -7.8949 0.9666 25 7 4.8416 -8.4194 0.0458 26 14 5.9992 -8.8509 2.5266 27 1 4.9817 -8.5328 3.5603 28 1 5.9696 -10.3066 2.2343 29 1 7.3461 -8.4734 3.0252 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.7307 -1.8247 4.4812 38 1 4.6972 -3.6139 0.9723 39 1 3.2282 -5.2052 -0.9640 40 1 3.7576 -4.8783 -2.6446 41 1 6.6627 -6.9638 -2.8712 42 1 5.5407 -5.7915 -3.6342 43 1 6.8563 -4.0407 -2.8792 44 1 7.9793 -5.2103 -2.1165 45 1 4.4629 -9.3028 0.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098196207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:09 Heat of formation + Delta-G solvation = 26.896453 kcal Electronic energy + Delta-G solvation = -27439.743877 eV Core-core repulsion = 23777.209332 eV Total energy + Delta-G solvation = -3662.534545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77386 -40.77235 -39.24767 -36.79378 -35.23097 -34.40239 -31.10134 -30.98383 -30.36166 -29.37289 -28.08583 -26.71212 -26.06689 -24.07754 -22.51396 -22.28844 -21.55138 -20.79204 -20.18767 -18.99429 -18.86100 -17.76373 -17.16828 -16.80568 -16.54223 -16.35695 -15.81826 -15.56511 -15.16961 -15.06995 -14.87786 -14.69210 -14.45252 -13.99448 -13.74750 -13.68124 -13.11622 -13.04632 -12.94057 -12.90379 -12.77203 -12.69959 -12.45245 -12.24993 -12.21644 -12.08018 -11.96878 -11.91249 -11.70779 -11.13117 -10.95373 -10.89768 -10.78946 -10.54476 -10.40670 -10.12676 -9.79540 -8.88116 -7.76662 -5.16342 -0.47109 0.28211 0.63648 0.97058 1.46963 1.48184 1.56035 2.27732 2.35908 2.49684 3.17397 3.36520 3.43266 3.61790 3.85673 3.97574 4.05335 4.10017 4.17810 4.24890 4.34440 4.44358 4.46145 4.57070 4.61580 4.65996 4.71870 4.81402 4.85521 4.88982 4.89499 4.95604 5.06900 5.13974 5.15223 5.18087 5.30488 5.36344 5.39626 5.51342 5.61972 5.70774 5.89016 6.26174 6.36270 6.66952 7.05244 7.18058 7.71632 8.57242 9.30738 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.003734 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.222544 B = 7496.823151 C = 8831.799766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.135 4.135 4 C -0.182 4.182 5 S 0.281 5.719 6 C -0.013 4.013 7 N -0.473 5.473 8 C -0.035 4.035 9 C 0.585 3.415 10 O -0.563 6.563 11 N -0.690 5.690 12 C 0.138 3.862 13 H 0.092 0.908 14 C -0.131 4.131 15 C 0.139 3.861 16 H 0.116 0.884 17 C -0.129 4.129 18 C -0.116 4.116 19 C 0.126 3.874 20 H 0.098 0.902 21 N -0.611 5.611 22 C -0.214 4.214 23 H 0.082 0.918 24 C -0.067 4.067 25 N -0.948 5.948 26 Si 0.974 3.026 27 H -0.292 1.292 28 H -0.298 1.298 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.235 0.765 38 H 0.406 0.594 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 20.757 3.398 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.193 4.193 4 C -0.307 4.307 5 S 0.538 5.462 6 C -0.312 4.312 7 N -0.187 5.187 8 C -0.169 4.169 9 C 0.370 3.630 10 O -0.444 6.444 11 N -0.337 5.337 12 C 0.032 3.968 13 H 0.109 0.891 14 C -0.171 4.171 15 C 0.033 3.967 16 H 0.133 0.867 17 C -0.168 4.168 18 C -0.156 4.156 19 C 0.019 3.981 20 H 0.116 0.884 21 N -0.332 5.332 22 C -0.343 4.343 23 H 0.099 0.901 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.804 3.196 27 H -0.220 1.220 28 H -0.224 1.224 29 H -0.195 1.195 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.242 0.758 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.178 20.998 3.472 22.461 hybrid contribution 0.706 -1.904 0.469 2.084 sum -6.472 19.094 3.941 20.543 Atomic orbital electron populations 1.21888 0.92301 1.01830 1.03671 1.20296 0.97097 0.96624 0.93634 1.21839 1.00692 0.93175 1.03571 1.26004 1.00765 0.99948 1.03975 1.82267 1.41028 1.30460 0.92478 1.28950 0.99667 0.98160 1.04457 1.66956 1.24550 1.28746 0.98488 1.20260 1.04501 1.00008 0.92163 1.17464 0.79054 0.79190 0.87283 1.90594 1.61927 1.63409 1.28448 1.45900 1.39895 1.37064 1.10849 1.22581 0.94536 0.93756 0.85935 0.89059 1.23316 0.97601 0.97018 0.99215 1.23611 0.90686 0.97422 0.84989 0.86719 1.22930 0.98246 0.97556 0.98099 1.22809 0.98702 0.98172 0.95890 1.23371 0.92879 0.86592 0.95287 0.88424 1.46733 1.54582 1.14221 1.17695 1.19325 1.23364 0.97086 0.94545 0.90065 1.25420 1.00799 0.98551 1.01155 1.69718 1.38023 1.16892 1.35144 0.85125 0.77830 0.77404 0.79263 1.21983 1.22441 1.19521 0.90902 0.90134 0.93838 0.87799 0.93679 0.90226 0.90998 0.74897 0.75839 0.95580 0.91122 0.94120 0.90801 0.89712 0.92014 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.05 71.98 0.65 -1.85 16 2 C -0.06 -1.28 3.12 -11.54 -0.04 -1.32 16 3 C -0.14 -2.35 9.16 71.98 0.66 -1.69 16 4 C -0.18 -4.59 5.03 24.99 0.13 -4.46 16 5 S 0.28 4.56 22.44 -56.49 -1.27 3.30 16 6 C -0.01 -0.28 12.17 130.71 1.59 1.32 16 7 N -0.47 -14.44 10.13 -193.03 -1.96 -16.40 16 8 C -0.04 -1.15 6.70 40.56 0.27 -0.88 16 9 C 0.58 22.15 7.78 86.62 0.67 22.82 16 10 O -0.56 -22.51 13.58 -4.15 -0.06 -22.57 16 11 N -0.69 -26.93 5.09 -438.21 -2.23 -29.16 16 12 C 0.14 5.36 2.73 46.62 0.13 5.49 16 13 H 0.09 3.34 7.36 -2.39 -0.02 3.32 16 14 C -0.13 -5.67 6.22 32.21 0.20 -5.47 16 15 C 0.14 6.66 4.72 46.22 0.22 6.87 16 16 H 0.12 6.45 5.52 -2.39 -0.01 6.43 16 17 C -0.13 -5.08 6.44 32.21 0.21 -4.88 16 18 C -0.12 -4.05 6.44 32.21 0.21 -3.84 16 19 C 0.13 4.98 5.04 46.25 0.23 5.21 16 20 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 21 N -0.61 -30.19 2.99 -615.06 -1.84 -32.03 16 22 C -0.21 -11.70 10.59 84.03 0.89 -10.81 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 25 N -0.95 -56.34 10.47 21.65 0.23 -56.12 16 26 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.07 0.99 7.84 -2.39 -0.02 0.97 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 3.14 4.94 -2.39 -0.01 3.13 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.23 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.41 16.58 8.15 -92.71 -0.76 15.82 16 39 H 0.03 1.26 7.98 -2.39 -0.02 1.24 16 40 H 0.07 2.76 7.82 -2.39 -0.02 2.74 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.51 7.82 -2.39 -0.02 2.49 16 43 H 0.08 2.44 7.82 -2.39 -0.02 2.42 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -69.68 370.85 1.65 -68.03 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.26 Total: 33.66 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.49 Total: 3.21 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -5.80 Total: -133.70 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.06 Total: -22.57 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.27 Total: 3.30 kcal Total: -69.68 1.65 -68.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098196207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.928 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds