Wall clock time and date at job start Tue Mar 31 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46759 * 2 1 4 4 N 1.30941 * 122.90715 * 90.02449 * 3 2 1 5 5 C 1.29423 * 117.36862 * 179.97438 * 4 3 2 6 6 S 1.70953 * 110.38813 * 359.97438 * 5 4 3 7 7 C 1.35665 * 122.90123 * 269.98227 * 3 2 1 8 8 C 1.46674 * 126.13289 * 0.06123 * 7 3 2 9 9 O 1.21690 * 120.00043 * 359.94921 * 8 7 3 10 10 N 1.34777 * 120.00047 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00174 * 179.97438 * 10 8 7 12 12 C 1.54321 * 111.69284 * 298.98639 * 11 10 8 13 13 C 1.55056 * 103.93847 * 262.79067 * 12 11 10 14 14 C 1.55057 * 102.10525 * 319.94069 * 13 12 11 15 15 C 1.54316 * 103.93719 * 40.06046 * 14 13 12 16 16 H 1.09008 * 111.02259 * 96.80610 * 15 14 13 17 17 C 1.53778 * 109.79139 * 221.68563 * 15 14 13 18 18 N 1.47216 * 106.37771 * 95.21878 * 17 15 14 19 19 C 1.36940 * 126.70210 * 211.28848 * 18 17 15 20 20 H 1.08003 * 119.99830 * 13.66943 * 19 18 17 21 21 C 1.38805 * 120.00077 * 193.67022 * 19 18 17 22 22 N 1.31621 * 119.99854 * 8.94325 * 21 19 18 23 23 Si 1.86805 * 120.00204 * 188.94678 * 21 19 18 24 24 H 1.48493 * 109.47120 * 94.97955 * 23 21 19 25 25 H 1.48501 * 109.46747 * 214.98135 * 23 21 19 26 26 H 1.48496 * 109.46781 * 334.97874 * 23 21 19 27 27 C 1.48672 * 107.09335 * 30.74235 * 18 17 15 28 28 H 1.08999 * 109.47442 * 60.00071 * 1 2 3 29 29 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47423 * 300.00185 * 1 2 3 31 31 H 1.08997 * 109.46963 * 239.99883 * 2 1 3 32 32 H 1.08996 * 109.46961 * 119.99823 * 2 1 3 33 33 H 1.07999 * 124.80945 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99911 * 359.97438 * 10 8 7 35 35 H 1.09007 * 110.53710 * 21.39961 * 12 11 10 36 36 H 1.08994 * 110.53858 * 144.17246 * 12 11 10 37 37 H 1.08994 * 110.91028 * 78.14685 * 13 12 11 38 38 H 1.09002 * 110.90253 * 201.70881 * 13 12 11 39 39 H 1.09000 * 110.53149 * 158.67124 * 14 13 12 40 40 H 1.09000 * 110.53667 * 281.30022 * 14 13 12 41 41 H 1.08996 * 110.07314 * 214.44087 * 17 15 14 42 42 H 1.08998 * 110.07440 * 335.98972 * 17 15 14 43 43 H 0.97011 * 120.00093 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.91173 * 210.52854 * 27 18 17 45 45 H 1.08998 * 109.94770 * 88.52332 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2698 2.0914 1.0993 5 6 2.6995 3.3058 0.9744 6 16 2.8461 3.7187 -0.6780 7 6 2.2782 2.1156 -1.1391 8 6 2.1025 1.6210 -2.5087 9 8 1.7018 0.4880 -2.6998 10 7 2.3853 2.4213 -3.5556 11 6 2.2104 1.9272 -4.9237 12 6 3.1085 0.7048 -5.2079 13 6 4.3465 1.3085 -5.9200 14 6 3.7025 2.3734 -6.8450 15 6 2.5919 2.9986 -5.9750 16 1 2.9350 3.9210 -5.5062 17 6 1.3241 3.2077 -6.8199 18 7 0.4744 2.0273 -6.5925 19 6 -0.3957 1.4609 -7.4856 20 1 -0.3531 1.7355 -8.5292 21 6 -1.3323 0.5339 -7.0494 22 7 -1.5046 0.3289 -5.7608 23 14 -2.3481 -0.4227 -8.2914 24 1 -1.6996 -1.7317 -8.5581 25 1 -3.7116 -0.6474 -7.7475 26 1 -2.4407 0.3506 -9.5557 27 6 0.7467 1.5525 -5.2102 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9333 3.9648 1.7975 34 1 2.7047 3.3245 -3.4033 35 1 3.4016 0.2208 -4.2762 36 1 2.5975 -0.0012 -5.8623 37 1 5.0202 1.7743 -5.2009 38 1 4.8678 0.5498 -6.5037 39 1 4.4364 3.1278 -7.1284 40 1 3.2774 1.9029 -7.7316 41 1 0.8046 4.1102 -6.4980 42 1 1.5861 3.2825 -7.8753 43 1 -2.1594 -0.3187 -5.4559 44 1 0.6157 0.4729 -5.1368 45 1 0.0862 2.0587 -4.5063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098865206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:43 Heat of formation + Delta-G solvation = 32.668684 kcal Electronic energy + Delta-G solvation = -27968.806067 eV Core-core repulsion = 24306.521825 eV Total energy + Delta-G solvation = -3662.284243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51609 -39.73103 -37.86402 -34.32859 -33.58216 -33.19090 -31.50841 -30.19355 -28.98897 -27.79373 -26.05567 -24.71004 -24.33122 -23.17898 -21.99903 -20.61844 -20.37847 -19.05957 -18.71131 -18.15361 -16.98568 -16.47594 -15.72627 -15.32189 -15.18463 -14.52848 -14.43789 -14.10798 -13.98469 -13.80230 -13.62607 -13.44389 -13.37835 -13.15708 -12.40468 -12.36118 -11.96732 -11.84695 -11.32739 -11.14181 -10.97645 -10.91578 -10.73652 -10.72865 -10.57384 -10.54396 -10.31588 -10.16849 -10.03820 -9.96000 -9.89300 -9.71162 -9.60241 -9.38216 -8.94421 -8.55604 -8.53562 -6.77608 -5.69807 -3.05494 0.20659 1.09961 1.46827 2.45951 3.33097 3.42755 3.43638 3.47666 3.50067 4.04132 4.52381 4.78148 4.88735 4.94790 5.05479 5.13156 5.25975 5.51208 5.53734 5.58378 5.59085 5.60131 5.76572 5.86977 5.91249 6.02403 6.04052 6.07002 6.11883 6.15680 6.25920 6.32404 6.40277 6.47993 6.54606 6.65044 6.67293 6.78703 6.84516 7.04676 7.42242 7.51263 7.66512 7.77978 7.92145 8.27916 8.51038 9.19100 9.82823 10.53621 11.42668 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.004277 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.937971 B = 6545.267184 C = 7847.532633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C 0.141 3.859 4 N -0.471 5.471 5 C 0.029 3.971 6 S 0.147 5.853 7 C -0.276 4.276 8 C 0.590 3.410 9 O -0.497 6.497 10 N -0.705 5.705 11 C 0.147 3.853 12 C -0.112 4.112 13 C -0.125 4.125 14 C -0.111 4.111 15 C -0.106 4.106 16 H 0.073 0.927 17 C 0.140 3.860 18 N -0.595 5.595 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.908 5.908 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.180 3.820 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.203 0.797 34 H 0.389 0.611 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.014 0.986 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 7.258 10.580 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C 0.004 3.996 4 N -0.185 5.185 5 C -0.267 4.267 6 S 0.401 5.599 7 C -0.400 4.400 8 C 0.374 3.626 9 O -0.373 6.373 10 N -0.356 5.356 11 C 0.061 3.939 12 C -0.150 4.150 13 C -0.163 4.163 14 C -0.148 4.148 15 C -0.126 4.126 16 H 0.091 0.909 17 C 0.013 3.987 18 N -0.320 5.320 19 C -0.363 4.363 20 H 0.093 0.907 21 C -0.199 4.199 22 N -0.553 5.553 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.054 3.946 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.220 0.780 34 H 0.222 0.778 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.519 7.034 10.439 17.753 hybrid contribution -0.689 -0.508 -0.209 0.881 sum 11.830 6.526 10.230 16.947 Atomic orbital electron populations 1.21600 0.93593 1.02337 1.01975 1.20432 0.96980 0.88084 1.04347 1.20761 0.95504 0.98454 0.84859 1.66092 1.14843 1.06109 1.31450 1.28632 1.01795 0.96099 1.00178 1.83854 1.59304 1.13042 1.03663 1.25732 1.16471 0.98125 0.99713 1.16593 0.78309 0.85712 0.81980 1.90859 1.44283 1.17876 1.84294 1.45930 1.67798 1.15927 1.05950 1.22142 1.00106 0.93420 0.78258 1.22676 0.94898 0.96947 1.00483 1.22601 0.97355 0.98112 0.98210 1.22443 0.96421 0.97509 0.98476 1.22813 0.97103 0.96818 0.95908 0.90876 1.21311 0.89550 0.91065 0.96770 1.44735 1.46571 1.28115 1.12605 1.18973 1.08740 1.19676 0.88868 0.90671 1.24871 0.98131 1.00992 0.95955 1.69958 1.36678 1.36848 1.11837 0.86175 0.79541 0.80225 0.80256 1.21555 1.21761 1.20596 1.21639 0.86273 1.01157 0.85489 0.91749 0.91799 0.93303 0.87474 0.90739 0.78018 0.77766 0.91625 0.89925 0.92438 0.92007 0.92403 0.90666 0.96825 0.93543 0.93596 0.89307 0.96113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.06 -0.85 5.75 -27.88 -0.16 -1.01 16 3 C 0.14 2.06 6.04 -83.89 -0.51 1.55 16 4 N -0.47 -6.19 10.50 -11.53 -0.12 -6.31 16 5 C 0.03 0.28 12.22 51.75 0.63 0.91 16 6 S 0.15 1.49 22.35 -107.50 -2.40 -0.91 16 7 C -0.28 -4.03 6.48 -37.10 -0.24 -4.27 16 8 C 0.59 10.26 7.07 -12.85 -0.09 10.17 16 9 O -0.50 -10.23 12.18 5.20 0.06 -10.17 16 10 N -0.71 -11.45 5.19 -46.97 -0.24 -11.69 16 11 C 0.15 2.75 0.93 -129.73 -0.12 2.63 16 12 C -0.11 -2.02 5.50 -24.95 -0.14 -2.16 16 13 C -0.13 -1.81 6.92 -24.56 -0.17 -1.98 16 14 C -0.11 -1.64 6.25 -24.95 -0.16 -1.80 16 15 C -0.11 -1.76 3.63 -88.53 -0.32 -2.08 16 16 H 0.07 1.02 7.71 -51.92 -0.40 0.62 16 17 C 0.14 2.84 6.63 -3.25 -0.02 2.82 16 18 N -0.59 -15.07 3.42 -169.94 -0.58 -15.65 16 19 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 20 H 0.08 2.02 7.84 -52.48 -0.41 1.60 16 21 C 0.00 -0.05 5.39 -17.43 -0.09 -0.14 16 22 N -0.91 -27.26 10.82 55.49 0.60 -26.66 16 23 Si 0.91 22.25 29.56 -169.99 -5.03 17.22 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.18 4.43 3.67 -2.44 -0.01 4.42 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.72 6.01 -51.93 -0.31 1.41 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.20 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.39 5.18 7.48 -40.82 -0.31 4.88 16 35 H 0.07 1.21 6.64 -51.92 -0.34 0.86 16 36 H 0.08 1.72 7.57 -51.93 -0.39 1.33 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.05 0.90 7.63 -51.93 -0.40 0.50 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.09 2.52 6.22 -51.93 -0.32 2.20 16 45 H 0.02 0.58 8.05 -51.93 -0.42 0.16 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -32.64 366.28 -10.01 -42.65 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.64 Total: 5.25 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.18 Total: 0.75 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.34 Total: -60.31 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.06 Total: -10.17 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.40 Total: -0.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.64 -10.01 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098865206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.321 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds