Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46759 * 2 1 4 4 N 1.30941 * 122.90715 * 90.02449 * 3 2 1 5 5 C 1.29423 * 117.36862 * 179.97438 * 4 3 2 6 6 S 1.70953 * 110.38813 * 359.97438 * 5 4 3 7 7 C 1.35665 * 122.90123 * 269.98227 * 3 2 1 8 8 C 1.46674 * 126.13289 * 0.06123 * 7 3 2 9 9 O 1.21690 * 120.00043 * 359.94921 * 8 7 3 10 10 N 1.34777 * 120.00047 * 179.97438 * 8 7 3 11 11 C 1.46503 * 120.00174 * 179.97438 * 10 8 7 12 12 C 1.54321 * 111.69284 * 298.98639 * 11 10 8 13 13 C 1.55056 * 103.93847 * 262.79067 * 12 11 10 14 14 C 1.55057 * 102.10525 * 319.94069 * 13 12 11 15 15 C 1.54316 * 103.93719 * 40.06046 * 14 13 12 16 16 H 1.09008 * 111.02259 * 96.80610 * 15 14 13 17 17 C 1.53778 * 109.79139 * 221.68563 * 15 14 13 18 18 N 1.47216 * 106.37771 * 95.21878 * 17 15 14 19 19 C 1.36940 * 126.70210 * 211.28848 * 18 17 15 20 20 H 1.08003 * 119.99830 * 13.66943 * 19 18 17 21 21 C 1.38805 * 120.00077 * 193.67022 * 19 18 17 22 22 N 1.31621 * 119.99854 * 8.94325 * 21 19 18 23 23 Si 1.86805 * 120.00204 * 188.94678 * 21 19 18 24 24 H 1.48493 * 109.47120 * 94.97955 * 23 21 19 25 25 H 1.48501 * 109.46747 * 214.98135 * 23 21 19 26 26 H 1.48496 * 109.46781 * 334.97874 * 23 21 19 27 27 C 1.48672 * 107.09335 * 30.74235 * 18 17 15 28 28 H 1.08999 * 109.47442 * 60.00071 * 1 2 3 29 29 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47423 * 300.00185 * 1 2 3 31 31 H 1.08997 * 109.46963 * 239.99883 * 2 1 3 32 32 H 1.08996 * 109.46961 * 119.99823 * 2 1 3 33 33 H 1.07999 * 124.80945 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99911 * 359.97438 * 10 8 7 35 35 H 1.09007 * 110.53710 * 21.39961 * 12 11 10 36 36 H 1.08994 * 110.53858 * 144.17246 * 12 11 10 37 37 H 1.08994 * 110.91028 * 78.14685 * 13 12 11 38 38 H 1.09002 * 110.90253 * 201.70881 * 13 12 11 39 39 H 1.09000 * 110.53149 * 158.67124 * 14 13 12 40 40 H 1.09000 * 110.53667 * 281.30022 * 14 13 12 41 41 H 1.08996 * 110.07314 * 214.44087 * 17 15 14 42 42 H 1.08998 * 110.07440 * 335.98972 * 17 15 14 43 43 H 0.97011 * 120.00093 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.91173 * 210.52854 * 27 18 17 45 45 H 1.08998 * 109.94770 * 88.52332 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2698 2.0914 1.0993 5 6 2.6995 3.3058 0.9744 6 16 2.8461 3.7187 -0.6780 7 6 2.2782 2.1156 -1.1391 8 6 2.1025 1.6210 -2.5087 9 8 1.7018 0.4880 -2.6998 10 7 2.3853 2.4213 -3.5556 11 6 2.2104 1.9272 -4.9237 12 6 3.1085 0.7048 -5.2079 13 6 4.3465 1.3085 -5.9200 14 6 3.7025 2.3734 -6.8450 15 6 2.5919 2.9986 -5.9750 16 1 2.9350 3.9210 -5.5062 17 6 1.3241 3.2077 -6.8199 18 7 0.4744 2.0273 -6.5925 19 6 -0.3957 1.4609 -7.4856 20 1 -0.3531 1.7355 -8.5292 21 6 -1.3323 0.5339 -7.0494 22 7 -1.5046 0.3289 -5.7608 23 14 -2.3481 -0.4227 -8.2914 24 1 -1.6996 -1.7317 -8.5581 25 1 -3.7116 -0.6474 -7.7475 26 1 -2.4407 0.3506 -9.5557 27 6 0.7467 1.5525 -5.2102 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9333 3.9648 1.7975 34 1 2.7047 3.3245 -3.4033 35 1 3.4016 0.2208 -4.2762 36 1 2.5975 -0.0012 -5.8623 37 1 5.0202 1.7743 -5.2009 38 1 4.8678 0.5498 -6.5037 39 1 4.4364 3.1278 -7.1284 40 1 3.2774 1.9029 -7.7316 41 1 0.8046 4.1102 -6.4980 42 1 1.5861 3.2825 -7.8753 43 1 -2.1594 -0.3187 -5.4559 44 1 0.6157 0.4729 -5.1368 45 1 0.0862 2.0587 -4.5063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098865206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = 10.091513 kcal Electronic energy + Delta-G solvation = -27969.785087 eV Core-core repulsion = 24306.521825 eV Total energy + Delta-G solvation = -3663.263262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79561 -40.95149 -39.26929 -36.15515 -34.90273 -34.38928 -33.46299 -31.46782 -30.49278 -29.44392 -27.18503 -26.31691 -26.10291 -24.27863 -23.36093 -22.30208 -21.69391 -20.48361 -19.97322 -19.19807 -18.84379 -17.90343 -17.15947 -16.54431 -16.42687 -16.33737 -15.71655 -15.43397 -15.29598 -15.23489 -15.03224 -14.89381 -14.75314 -14.48232 -14.27083 -13.67932 -13.42697 -13.00694 -12.98360 -12.85953 -12.73845 -12.44340 -12.26670 -12.11783 -12.03377 -11.98293 -11.87716 -11.67403 -11.63862 -11.58186 -11.44120 -11.02474 -10.68509 -10.67393 -10.59384 -10.06227 -9.84277 -8.86789 -7.87681 -5.25337 -0.76112 0.19016 0.55947 1.42186 1.43072 1.45290 1.54145 2.01363 2.16420 2.48498 3.15885 3.30827 3.41600 3.65428 3.76770 3.83032 3.90378 4.00066 4.10698 4.35530 4.39382 4.41519 4.42598 4.50251 4.55395 4.60389 4.67791 4.77776 4.90233 4.94000 4.99641 5.00196 5.05814 5.12083 5.22007 5.23518 5.29306 5.31201 5.39631 5.47206 5.55461 5.66402 5.81535 6.19050 6.45951 6.60984 7.01380 7.21417 7.73365 8.44651 9.23843 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.004277 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.937971 B = 6545.267184 C = 7847.532633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C 0.138 3.862 4 N -0.498 5.498 5 C 0.047 3.953 6 S 0.221 5.779 7 C -0.322 4.322 8 C 0.586 3.414 9 O -0.543 6.543 10 N -0.696 5.696 11 C 0.156 3.844 12 C -0.110 4.110 13 C -0.111 4.111 14 C -0.104 4.104 15 C -0.094 4.094 16 H 0.116 0.884 17 C 0.132 3.868 18 N -0.618 5.618 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.064 4.064 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.261 1.261 27 C 0.199 3.801 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.244 0.756 44 H 0.036 0.964 45 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.731 10.343 10.965 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 C 0.000 4.000 4 N -0.212 5.212 5 C -0.248 4.248 6 S 0.476 5.524 7 C -0.446 4.446 8 C 0.372 3.628 9 O -0.422 6.422 10 N -0.348 5.348 11 C 0.069 3.931 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.114 4.114 16 H 0.134 0.866 17 C 0.007 3.993 18 N -0.343 5.343 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.594 5.594 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.224 1.224 26 H -0.185 1.185 27 C 0.073 3.927 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.267 0.733 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.055 0.945 45 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges 15.541 10.201 10.802 21.500 hybrid contribution -1.627 -1.362 -0.250 2.136 sum 13.914 8.840 10.552 19.572 Atomic orbital electron populations 1.21504 0.94148 1.02417 1.00592 1.20333 0.96473 0.89110 1.03952 1.20750 0.95224 0.98403 0.85619 1.66144 1.16849 1.07598 1.30653 1.29515 0.98330 0.95289 1.01645 1.83502 1.57353 1.08656 1.02849 1.25490 1.19454 1.01707 0.97964 1.17047 0.77215 0.85212 0.83351 1.90843 1.46061 1.20000 1.85313 1.45707 1.67673 1.16662 1.04737 1.21792 0.95941 0.95008 0.80340 1.22536 0.96527 0.96106 0.99704 1.22564 0.95641 0.98239 0.98369 1.22425 0.96351 0.98289 0.97112 1.22832 0.95967 0.97830 0.94782 0.86610 1.21579 0.90298 0.88986 0.98471 1.45028 1.46898 1.30044 1.12351 1.19425 1.08544 1.19213 0.89807 0.89725 1.25737 0.99951 1.02481 0.97590 1.70215 1.37504 1.37616 1.14017 0.85123 0.77307 0.78718 0.78612 1.21606 1.22430 1.18472 1.21191 0.89593 0.97354 0.84588 0.95491 0.91106 0.91969 0.89877 0.88949 0.73339 0.75679 0.92601 0.94105 0.89584 0.90731 0.88069 0.92766 0.96716 0.92211 0.94685 0.94518 1.00821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.89 71.98 0.71 -3.34 16 2 C -0.06 -1.80 5.75 29.85 0.17 -1.63 16 3 C 0.14 4.05 6.04 42.10 0.25 4.30 16 4 N -0.50 -12.10 10.50 -190.40 -2.00 -14.10 16 5 C 0.05 0.73 12.22 130.60 1.60 2.33 16 6 S 0.22 3.76 22.35 -56.49 -1.26 2.49 16 7 C -0.32 -9.36 6.48 23.88 0.15 -9.20 16 8 C 0.59 21.33 7.07 86.45 0.61 21.94 16 9 O -0.54 -24.59 12.18 -4.32 -0.05 -24.64 16 10 N -0.70 -22.59 5.19 -420.72 -2.18 -24.77 16 11 C 0.16 5.96 0.93 4.96 0.00 5.96 16 12 C -0.11 -4.11 5.50 31.75 0.17 -3.94 16 13 C -0.11 -2.92 6.92 32.00 0.22 -2.69 16 14 C -0.10 -2.72 6.25 31.75 0.20 -2.52 16 15 C -0.09 -2.91 3.63 -9.44 -0.03 -2.94 16 16 H 0.12 2.65 7.71 -2.38 -0.02 2.63 16 17 C 0.13 5.25 6.63 86.50 0.57 5.82 16 18 N -0.62 -32.52 3.42 -691.56 -2.36 -34.88 16 19 C -0.24 -13.84 10.28 84.03 0.86 -12.98 16 20 H 0.09 4.58 7.84 -2.91 -0.02 4.56 16 21 C -0.06 -3.80 5.39 84.86 0.46 -3.34 16 22 N -0.95 -61.09 10.82 21.65 0.23 -60.85 16 23 Si 0.97 47.59 29.56 68.60 2.03 49.62 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 27 C 0.20 10.51 3.67 86.22 0.32 10.83 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.94 6.01 -2.39 -0.01 2.93 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.25 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.41 9.95 7.48 -92.71 -0.69 9.26 16 35 H 0.06 2.16 6.64 -2.38 -0.02 2.15 16 36 H 0.04 1.84 7.57 -2.39 -0.02 1.82 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.67 7.62 -2.39 -0.02 1.65 16 41 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 2.21 7.63 -2.39 -0.02 2.20 16 43 H 0.24 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.04 2.29 6.22 -2.39 -0.01 2.28 16 45 H -0.03 -1.58 8.05 -2.39 -0.02 -1.60 16 Total: -1.00 -80.81 366.28 1.00 -79.81 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.32 Total: 18.73 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.28 Total: 8.59 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -6.31 Total: -134.60 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.26 Total: 2.49 kcal Total: -80.81 1.00 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098865206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.906 kcal (2) G-P(sol) polarization free energy of solvation -80.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds