Wall clock time and date at job start Tue Mar 31 2020 18:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47254 * 2 1 4 4 N 1.29436 * 124.80387 * 90.02727 * 3 2 1 5 5 C 1.30938 * 117.36788 * 179.97438 * 4 3 2 6 6 C 1.35660 * 114.19164 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13568 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99554 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00567 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.56363 * 112.70957 * 298.48416 * 10 9 7 12 12 C 1.54832 * 104.40402 * 262.03270 * 11 10 9 13 13 C 1.54836 * 102.72930 * 321.30209 * 12 11 10 14 14 C 1.54145 * 104.35256 * 38.22660 * 13 12 11 15 15 H 1.08998 * 111.89718 * 99.84744 * 14 13 12 16 16 C 1.54462 * 108.79837 * 224.04713 * 14 13 12 17 17 N 1.48334 * 104.30806 * 139.51659 * 16 14 13 18 18 C 1.36940 * 128.19864 * 138.23314 * 17 16 14 19 19 H 1.07993 * 120.00016 * 196.24677 * 18 17 16 20 20 C 1.38812 * 119.99509 * 16.24708 * 18 17 16 21 21 N 1.31618 * 119.99924 * 200.54479 * 20 18 17 22 22 Si 1.86799 * 120.00285 * 20.54871 * 20 18 17 23 23 H 1.48496 * 109.47038 * 265.01043 * 22 20 18 24 24 H 1.48498 * 109.47074 * 25.01507 * 22 20 18 25 25 H 1.48502 * 109.47166 * 145.01268 * 22 20 18 26 26 C 1.48338 * 103.60861 * 318.48774 * 17 16 14 27 27 S 1.70951 * 124.81186 * 270.30464 * 3 2 1 28 28 H 1.09004 * 109.47050 * 299.99209 * 1 2 3 29 29 H 1.09001 * 109.47359 * 59.99662 * 1 2 3 30 30 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46733 * 240.00374 * 2 1 3 32 32 H 1.09004 * 109.47050 * 120.00770 * 2 1 3 33 33 H 1.07998 * 122.90299 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99574 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.83595 * 143.09705 * 11 10 9 36 36 H 1.09003 * 110.03658 * 20.57174 * 11 10 9 37 37 H 1.08998 * 110.76276 * 202.99059 * 12 11 10 38 38 H 1.08997 * 110.75759 * 79.60904 * 12 11 10 39 39 H 1.08999 * 110.45832 * 279.50356 * 13 12 11 40 40 H 1.09007 * 110.46065 * 156.94248 * 13 12 11 41 41 H 1.09003 * 110.46847 * 20.80491 * 16 14 13 42 42 H 1.09004 * 110.57040 * 258.27506 * 16 14 13 43 43 H 0.97007 * 119.99891 * 5.20664 * 21 20 18 44 44 H 1.08993 * 110.46746 * 160.21195 * 26 17 16 45 45 H 1.09001 * 110.46985 * 282.80679 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2791 2.1171 1.0628 5 6 2.7123 3.3410 0.8934 6 6 2.8431 3.7096 -0.4056 7 6 3.3043 5.0142 -0.8924 8 8 3.6123 5.8850 -0.1000 9 7 3.3871 5.2485 -2.2170 10 6 3.8484 6.5513 -2.7030 11 6 2.9196 7.7264 -2.2541 12 6 2.0010 7.9792 -3.4746 13 6 2.9651 7.7922 -4.6717 14 6 3.8718 6.6183 -4.2524 15 1 3.5567 5.6789 -4.7066 16 6 5.3342 6.9680 -4.6058 17 7 6.1193 6.4738 -3.4483 18 6 7.3178 5.8113 -3.4589 19 1 7.6502 5.2825 -2.5779 20 6 8.1053 5.8195 -4.6020 21 7 9.0236 4.8927 -4.7751 22 14 7.8618 7.1460 -5.8944 23 1 6.9510 6.6434 -6.9541 24 1 7.2676 8.3508 -5.2614 25 1 9.1733 7.4985 -6.4953 26 6 5.2959 6.8615 -2.2770 27 16 2.3506 2.3433 -1.4035 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 2.9462 3.9999 1.7165 34 1 3.1413 4.5545 -2.8485 35 1 3.5045 8.6176 -2.0264 36 1 2.3290 7.4259 -1.3886 37 1 1.6021 8.9933 -3.4545 38 1 1.1949 7.2464 -3.5097 39 1 3.5572 8.6939 -4.8284 40 1 2.4079 7.5398 -5.5739 41 1 5.4528 8.0461 -4.7144 42 1 5.6400 6.4580 -5.5194 43 1 9.0998 4.1613 -4.1425 44 1 5.5706 6.2682 -1.4049 45 1 5.4091 7.9250 -2.0667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099178459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:19 Heat of formation + Delta-G solvation = 32.298167 kcal Electronic energy + Delta-G solvation = -27225.648876 eV Core-core repulsion = 23563.348566 eV Total energy + Delta-G solvation = -3662.300309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51115 -39.82807 -38.13996 -34.65728 -34.32481 -33.63146 -31.84736 -30.37595 -29.38330 -27.99802 -26.24938 -25.22005 -24.18033 -23.18235 -22.16531 -20.95740 -20.23523 -19.40850 -18.96404 -18.33868 -17.55782 -16.80410 -16.00055 -15.64059 -15.31522 -15.10424 -14.77783 -14.57465 -14.37656 -14.22211 -13.89353 -13.72995 -13.27983 -13.17056 -12.69965 -12.63217 -12.47298 -12.12977 -11.80222 -11.74361 -11.56817 -11.45044 -11.10191 -10.89025 -10.83660 -10.74621 -10.50810 -10.42594 -10.08206 -9.91650 -9.77667 -9.66035 -9.52537 -9.19276 -9.10570 -8.93455 -8.58908 -7.09125 -6.34083 -3.23367 0.09531 0.97699 1.39921 2.35081 3.14850 3.26681 3.39433 3.52803 3.66570 3.79085 4.53017 4.54789 4.61016 4.70388 4.76495 4.79564 4.88608 5.01004 5.12848 5.19675 5.24845 5.39431 5.41071 5.51963 5.53269 5.55049 5.63030 5.72578 5.74837 5.82837 5.86554 5.93304 5.99890 6.11040 6.17947 6.29798 6.38399 6.45602 6.51283 6.64723 6.71986 6.93702 7.39457 7.55559 7.64575 8.25230 8.31211 9.00430 9.53021 10.28674 11.15306 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003680 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.575723 B = 7607.232474 C = 8572.298227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.057 3.943 4 N -0.477 5.477 5 C 0.115 3.885 6 C -0.283 4.283 7 C 0.595 3.405 8 O -0.521 6.521 9 N -0.694 5.694 10 C 0.160 3.840 11 C -0.118 4.118 12 C -0.123 4.123 13 C -0.117 4.117 14 C -0.109 4.109 15 H 0.080 0.920 16 C 0.111 3.889 17 N -0.606 5.606 18 C -0.314 4.314 19 H 0.075 0.925 20 C -0.018 4.018 21 N -0.924 5.924 22 Si 1.053 2.947 23 H -0.296 1.296 24 H -0.281 1.281 25 H -0.299 1.299 26 C 0.129 3.871 27 S 0.166 5.834 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.188 0.812 34 H 0.395 0.605 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.262 0.738 44 H 0.060 0.940 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 -5.002 4.727 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.219 4.219 4 N -0.191 5.191 5 C -0.042 4.042 6 C -0.408 4.408 7 C 0.380 3.620 8 O -0.399 6.399 9 N -0.343 5.343 10 C 0.072 3.928 11 C -0.157 4.157 12 C -0.161 4.161 13 C -0.155 4.155 14 C -0.129 4.129 15 H 0.098 0.902 16 C -0.015 4.015 17 N -0.331 5.331 18 C -0.440 4.440 19 H 0.093 0.907 20 C -0.218 4.218 21 N -0.564 5.564 22 Si 0.885 3.115 23 H -0.224 1.224 24 H -0.207 1.207 25 H -0.227 1.227 26 C 0.002 3.998 27 S 0.422 5.578 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.205 0.795 34 H 0.230 0.770 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.948 -4.319 3.288 20.673 hybrid contribution -0.380 -0.461 1.854 1.948 sum -20.328 -4.780 5.142 21.506 Atomic orbital electron populations 1.21784 0.93199 1.02779 1.02807 1.20308 0.96899 0.87236 1.04738 1.27499 1.01257 1.01959 0.91141 1.66203 1.15629 1.06120 1.31195 1.22157 0.95239 0.91248 0.95557 1.25891 1.16542 1.00539 0.97796 1.16648 0.77807 0.84775 0.82803 1.90834 1.49224 1.44693 1.55177 1.45727 1.66809 1.16058 1.05731 1.22218 0.95659 0.81449 0.93435 1.23008 0.97471 0.97494 0.97710 1.22508 0.97520 1.00973 0.95059 1.22453 0.97126 0.98237 0.97684 1.23019 0.97981 0.98653 0.93274 0.90158 1.22362 0.88704 0.97605 0.92869 1.45524 1.21245 1.66744 0.99569 1.20093 0.94917 1.27112 1.01923 0.90715 1.25943 0.94621 1.02453 0.98738 1.70870 1.36477 1.11629 1.37432 0.83981 0.74868 0.76952 0.75705 1.22448 1.20750 1.22745 1.21981 0.87942 0.97842 0.92033 1.83934 1.57693 1.04602 1.11556 0.91834 0.92271 0.91150 0.89258 0.88402 0.79506 0.77029 0.90361 0.91255 0.91632 0.91972 0.90889 0.91619 0.94046 0.91821 0.92765 0.92182 0.94326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.05 -0.37 6.51 -27.89 -0.18 -0.55 16 3 C 0.06 0.61 6.64 -13.29 -0.09 0.52 16 4 N -0.48 -6.15 10.51 -11.50 -0.12 -6.27 16 5 C 0.12 1.57 11.09 -18.85 -0.21 1.36 16 6 C -0.28 -4.00 6.48 -37.10 -0.24 -4.24 16 7 C 0.60 9.86 6.91 -12.85 -0.09 9.77 16 8 O -0.52 -9.96 14.49 5.19 0.08 -9.89 16 9 N -0.69 -11.02 5.29 -45.71 -0.24 -11.26 16 10 C 0.16 2.72 0.92 -128.35 -0.12 2.60 16 11 C -0.12 -1.74 5.75 -23.96 -0.14 -1.88 16 12 C -0.12 -1.48 6.90 -24.80 -0.17 -1.65 16 13 C -0.12 -1.53 6.36 -25.17 -0.16 -1.69 16 14 C -0.11 -1.78 3.67 -88.14 -0.32 -2.11 16 15 H 0.08 1.24 7.74 -51.93 -0.40 0.84 16 16 C 0.11 2.31 4.23 -2.26 -0.01 2.30 16 17 N -0.61 -14.87 3.21 -168.71 -0.54 -15.41 16 18 C -0.31 -9.04 10.63 -15.06 -0.16 -9.20 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 20 C -0.02 -0.52 5.47 -17.43 -0.10 -0.62 16 21 N -0.92 -28.95 13.70 55.49 0.76 -28.19 16 22 Si 1.05 26.29 24.97 -169.99 -4.24 22.05 16 23 H -0.30 -6.97 6.76 56.52 0.38 -6.58 16 24 H -0.28 -6.59 5.93 56.52 0.34 -6.26 16 25 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 26 C 0.13 2.77 6.11 -2.48 -0.02 2.75 16 27 S 0.17 1.82 22.31 -107.50 -2.40 -0.58 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.40 5.56 7.51 -40.82 -0.31 5.25 16 35 H 0.08 1.17 7.26 -51.93 -0.38 0.79 16 36 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.96 7.19 -51.93 -0.37 0.59 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.85 5.94 -51.93 -0.31 0.54 16 42 H 0.06 1.42 5.09 -51.93 -0.26 1.15 16 43 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 44 H 0.06 1.41 6.81 -51.93 -0.35 1.06 16 45 H 0.04 0.82 7.23 -51.93 -0.38 0.44 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.78 363.43 -9.45 -43.23 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.58 Total: 3.98 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.63 Total: -3.13 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.14 Total: -61.13 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -4.24 Total: 22.05 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.40 Total: -0.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.78 -9.45 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099178459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.527 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds