Wall clock time and date at job start Tue Mar 31 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47254 * 2 1 4 4 N 1.29436 * 124.80387 * 90.02727 * 3 2 1 5 5 C 1.30938 * 117.36788 * 179.97438 * 4 3 2 6 6 C 1.35660 * 114.19164 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13568 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99554 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00567 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.56363 * 112.70957 * 298.48416 * 10 9 7 12 12 C 1.54832 * 104.40402 * 262.03270 * 11 10 9 13 13 C 1.54836 * 102.72930 * 321.30209 * 12 11 10 14 14 C 1.54145 * 104.35256 * 38.22660 * 13 12 11 15 15 H 1.08998 * 111.89718 * 99.84744 * 14 13 12 16 16 C 1.54462 * 108.79837 * 224.04713 * 14 13 12 17 17 N 1.48334 * 104.30806 * 139.51659 * 16 14 13 18 18 C 1.36940 * 128.19864 * 138.23314 * 17 16 14 19 19 H 1.07993 * 120.00016 * 196.24677 * 18 17 16 20 20 C 1.38812 * 119.99509 * 16.24708 * 18 17 16 21 21 N 1.31618 * 119.99924 * 200.54479 * 20 18 17 22 22 Si 1.86799 * 120.00285 * 20.54871 * 20 18 17 23 23 H 1.48496 * 109.47038 * 265.01043 * 22 20 18 24 24 H 1.48498 * 109.47074 * 25.01507 * 22 20 18 25 25 H 1.48502 * 109.47166 * 145.01268 * 22 20 18 26 26 C 1.48338 * 103.60861 * 318.48774 * 17 16 14 27 27 S 1.70951 * 124.81186 * 270.30464 * 3 2 1 28 28 H 1.09004 * 109.47050 * 299.99209 * 1 2 3 29 29 H 1.09001 * 109.47359 * 59.99662 * 1 2 3 30 30 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46733 * 240.00374 * 2 1 3 32 32 H 1.09004 * 109.47050 * 120.00770 * 2 1 3 33 33 H 1.07998 * 122.90299 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99574 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.83595 * 143.09705 * 11 10 9 36 36 H 1.09003 * 110.03658 * 20.57174 * 11 10 9 37 37 H 1.08998 * 110.76276 * 202.99059 * 12 11 10 38 38 H 1.08997 * 110.75759 * 79.60904 * 12 11 10 39 39 H 1.08999 * 110.45832 * 279.50356 * 13 12 11 40 40 H 1.09007 * 110.46065 * 156.94248 * 13 12 11 41 41 H 1.09003 * 110.46847 * 20.80491 * 16 14 13 42 42 H 1.09004 * 110.57040 * 258.27506 * 16 14 13 43 43 H 0.97007 * 119.99891 * 5.20664 * 21 20 18 44 44 H 1.08993 * 110.46746 * 160.21195 * 26 17 16 45 45 H 1.09001 * 110.46985 * 282.80679 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2791 2.1171 1.0628 5 6 2.7123 3.3410 0.8934 6 6 2.8431 3.7096 -0.4056 7 6 3.3043 5.0142 -0.8924 8 8 3.6123 5.8850 -0.1000 9 7 3.3871 5.2485 -2.2170 10 6 3.8484 6.5513 -2.7030 11 6 2.9196 7.7264 -2.2541 12 6 2.0010 7.9792 -3.4746 13 6 2.9651 7.7922 -4.6717 14 6 3.8718 6.6183 -4.2524 15 1 3.5567 5.6789 -4.7066 16 6 5.3342 6.9680 -4.6058 17 7 6.1193 6.4738 -3.4483 18 6 7.3178 5.8113 -3.4589 19 1 7.6502 5.2825 -2.5779 20 6 8.1053 5.8195 -4.6020 21 7 9.0236 4.8927 -4.7751 22 14 7.8618 7.1460 -5.8944 23 1 6.9510 6.6434 -6.9541 24 1 7.2676 8.3508 -5.2614 25 1 9.1733 7.4985 -6.4953 26 6 5.2959 6.8615 -2.2770 27 16 2.3506 2.3433 -1.4035 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 2.9462 3.9999 1.7165 34 1 3.1413 4.5545 -2.8485 35 1 3.5045 8.6176 -2.0264 36 1 2.3290 7.4259 -1.3886 37 1 1.6021 8.9933 -3.4545 38 1 1.1949 7.2464 -3.5097 39 1 3.5572 8.6939 -4.8284 40 1 2.4079 7.5398 -5.5739 41 1 5.4528 8.0461 -4.7144 42 1 5.6400 6.4580 -5.5194 43 1 9.0998 4.1613 -4.1425 44 1 5.5706 6.2682 -1.4049 45 1 5.4091 7.9250 -2.0667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099178459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:18 Heat of formation + Delta-G solvation = 8.351465 kcal Electronic energy + Delta-G solvation = -27226.687282 eV Core-core repulsion = 23563.348566 eV Total energy + Delta-G solvation = -3663.338716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79853 -40.91548 -39.48053 -36.38867 -35.06186 -34.85473 -33.91390 -31.52213 -30.67490 -29.54866 -27.19884 -26.63237 -25.82949 -24.08221 -23.35406 -22.45679 -21.58583 -20.62456 -20.27184 -19.54019 -19.32697 -18.14310 -17.34792 -16.78016 -16.59704 -16.40217 -16.03970 -15.83840 -15.57219 -15.35755 -15.17425 -14.92063 -14.82199 -14.49418 -14.17375 -14.11283 -13.34840 -13.19683 -12.96026 -12.92123 -12.69755 -12.61039 -12.55579 -12.17186 -12.11436 -12.04883 -11.79480 -11.60425 -11.52672 -11.37713 -11.32812 -11.16579 -10.86899 -10.82311 -10.66267 -10.20635 -10.01354 -9.15494 -8.69274 -5.50202 -0.90307 0.03198 0.43161 1.28925 1.38989 1.54391 1.70763 1.90506 2.05464 2.53427 2.95758 3.02557 3.20413 3.31806 3.65423 3.69202 3.81069 3.86354 4.10392 4.18198 4.22759 4.26223 4.34497 4.36891 4.45949 4.51359 4.63507 4.65233 4.72518 4.82409 4.91266 4.92154 4.97353 4.97475 5.01701 5.04652 5.17863 5.21818 5.26811 5.30953 5.44325 5.49600 5.58568 6.03313 6.29257 6.47572 6.75022 6.98346 7.35443 8.14002 8.81630 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003680 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.575723 B = 7607.232474 C = 8572.298227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.066 3.934 4 N -0.500 5.500 5 C 0.117 3.883 6 C -0.320 4.320 7 C 0.593 3.407 8 O -0.557 6.557 9 N -0.691 5.691 10 C 0.163 3.837 11 C -0.114 4.114 12 C -0.110 4.110 13 C -0.110 4.110 14 C -0.101 4.101 15 H 0.093 0.907 16 C 0.103 3.897 17 N -0.628 5.628 18 C -0.306 4.306 19 H 0.029 0.971 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 1.099 2.901 23 H -0.268 1.268 24 H -0.258 1.258 25 H -0.308 1.308 26 C 0.128 3.872 27 S 0.209 5.791 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.185 0.815 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.246 0.754 44 H 0.024 0.976 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.335 -4.785 2.707 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.209 4.209 4 N -0.214 5.214 5 C -0.041 4.041 6 C -0.444 4.444 7 C 0.380 3.620 8 O -0.437 6.437 9 N -0.341 5.341 10 C 0.075 3.925 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.121 4.121 15 H 0.112 0.888 16 C -0.021 4.021 17 N -0.354 5.354 18 C -0.434 4.434 19 H 0.047 0.953 20 C -0.265 4.265 21 N -0.600 5.600 22 Si 0.924 3.076 23 H -0.194 1.194 24 H -0.183 1.183 25 H -0.237 1.237 26 C 0.002 3.998 27 S 0.467 5.533 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.202 0.798 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.558 -4.112 1.259 23.948 hybrid contribution 0.735 -0.669 2.647 2.827 sum -22.823 -4.781 3.906 23.643 Atomic orbital electron populations 1.21786 0.91910 1.04160 1.02382 1.20592 0.97838 0.84936 1.06154 1.28267 0.98893 1.03044 0.90663 1.66281 1.17038 1.05954 1.32160 1.22242 0.94623 0.91706 0.95558 1.25703 1.18898 1.00965 0.98874 1.16957 0.77060 0.85351 0.82670 1.90799 1.50809 1.46181 1.55960 1.45669 1.66492 1.16102 1.05832 1.22130 0.93198 0.82914 0.94244 1.22971 0.97344 0.95963 0.99018 1.22473 0.96886 1.02907 0.92422 1.22463 0.96706 0.96447 0.99177 1.23019 0.95706 1.01070 0.92303 0.88849 1.22588 0.90790 0.97795 0.90940 1.45539 1.20599 1.67006 1.02274 1.19851 0.96987 1.26284 1.00325 0.95258 1.27277 0.94195 1.03675 1.01332 1.70985 1.38565 1.12560 1.37885 0.83411 0.75118 0.74994 0.74044 1.19398 1.18282 1.23693 1.22085 0.90526 0.97134 0.90063 1.83681 1.56664 1.02546 1.10421 0.93021 0.91949 0.88904 0.87007 0.87804 0.79807 0.75945 0.90838 0.92101 0.89215 0.90530 0.90647 0.88636 0.92870 0.92861 0.94485 0.95743 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 71.98 0.71 -0.62 16 2 C -0.05 -0.65 6.51 29.85 0.19 -0.45 16 3 C 0.07 1.31 6.64 88.46 0.59 1.90 16 4 N -0.50 -12.68 10.51 -190.31 -2.00 -14.68 16 5 C 0.12 3.27 11.09 84.23 0.93 4.20 16 6 C -0.32 -9.16 6.48 23.88 0.15 -9.00 16 7 C 0.59 20.17 6.91 86.45 0.60 20.76 16 8 O -0.56 -22.33 14.49 -4.33 -0.06 -22.39 16 9 N -0.69 -21.75 5.29 -416.74 -2.20 -23.95 16 10 C 0.16 5.40 0.92 5.85 0.01 5.41 16 11 C -0.11 -3.15 5.75 32.39 0.19 -2.96 16 12 C -0.11 -2.14 6.90 31.85 0.22 -1.92 16 13 C -0.11 -2.34 6.36 31.61 0.20 -2.14 16 14 C -0.10 -3.02 3.67 -9.19 -0.03 -3.05 16 15 H 0.09 2.57 7.74 -2.39 -0.02 2.55 16 16 C 0.10 4.12 4.23 86.52 0.37 4.49 16 17 N -0.63 -31.26 3.21 -687.69 -2.20 -33.46 16 18 C -0.31 -18.42 10.63 84.03 0.89 -17.53 16 19 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 20 C -0.07 -4.31 5.47 84.86 0.46 -3.85 16 21 N -0.96 -62.21 13.70 21.65 0.30 -61.91 16 22 Si 1.10 52.79 24.97 68.60 1.71 54.50 16 23 H -0.27 -11.57 6.76 99.48 0.67 -10.90 16 24 H -0.26 -11.27 5.93 99.48 0.59 -10.68 16 25 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 26 C 0.13 5.64 6.11 86.38 0.53 6.17 16 27 S 0.21 4.30 22.31 -56.49 -1.26 3.04 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 34 H 0.40 10.93 7.51 -92.71 -0.70 10.23 16 35 H 0.07 2.09 7.26 -2.38 -0.02 2.07 16 36 H 0.06 1.80 6.82 -2.39 -0.02 1.78 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.62 7.19 -2.39 -0.02 1.60 16 40 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.05 2.02 5.94 -2.39 -0.01 2.00 16 42 H 0.05 2.24 5.09 -2.39 -0.01 2.23 16 43 H 0.25 16.24 8.73 -92.70 -0.81 15.43 16 44 H 0.02 1.21 6.81 -2.39 -0.02 1.20 16 45 H 0.04 1.74 7.23 -2.39 -0.02 1.73 16 Total: -1.00 -78.32 363.43 0.42 -77.90 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.13 Total: 19.55 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.01 Total: 1.40 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -6.11 Total: -134.01 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 1.71 Total: 54.50 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.26 Total: 3.04 kcal Total: -78.32 0.42 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099178459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.254 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds