Wall clock time and date at job start Tue Mar 31 2020 19:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99934 * 2 1 4 4 O 1.20824 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00069 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47312 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47345 * 180.02562 * 6 5 3 8 8 C 1.37091 * 119.99897 * 274.76605 * 7 6 5 9 9 H 1.08003 * 119.99670 * 130.16045 * 8 7 6 10 10 C 1.38941 * 120.00321 * 310.15512 * 8 7 6 11 11 N 1.31419 * 120.00005 * 359.38304 * 10 8 7 12 12 Si 1.86799 * 120.00400 * 179.38191 * 10 8 7 13 13 H 1.48500 * 109.47196 * 60.00242 * 12 10 8 14 14 H 1.48499 * 109.47254 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46790 * 300.00052 * 12 10 8 16 16 C 1.34780 * 119.99572 * 94.76042 * 7 6 5 17 17 O 1.21289 * 120.00114 * 5.37731 * 16 7 6 18 18 C 1.50698 * 119.99769 * 185.37409 * 16 7 6 19 19 C 1.53000 * 109.47143 * 200.17106 * 18 16 7 20 20 C 1.52995 * 109.47216 * 80.17205 * 18 16 7 21 21 O 1.42904 * 109.47195 * 320.17032 * 18 16 7 22 22 C 1.35903 * 117.00274 * 303.94597 * 21 18 16 23 23 C 1.38723 * 120.05850 * 179.83690 * 22 21 18 24 24 C 1.38148 * 119.94696 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.05280 * 359.97438 * 24 23 22 26 26 C 1.38273 * 120.11207 * 0.04418 * 25 24 23 27 27 C 1.38140 * 120.05374 * 359.95504 * 26 25 24 28 28 H 1.09001 * 109.46791 * 299.99620 * 1 2 3 29 29 H 1.08992 * 109.47569 * 59.99648 * 1 2 3 30 30 H 1.08996 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46562 * 60.00147 * 5 3 2 32 32 H 1.08998 * 109.47269 * 300.00364 * 5 3 2 33 33 H 1.09002 * 109.46652 * 60.00097 * 6 5 3 34 34 H 1.09005 * 109.47105 * 300.00723 * 6 5 3 35 35 H 0.96992 * 120.00018 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47096 * 185.84307 * 19 18 16 37 37 H 1.09000 * 109.47287 * 305.84395 * 19 18 16 38 38 H 1.09000 * 109.47128 * 65.84446 * 19 18 16 39 39 H 1.09006 * 109.47323 * 295.02632 * 20 18 16 40 40 H 1.09001 * 109.47277 * 55.02713 * 20 18 16 41 41 H 1.09002 * 109.47434 * 175.03398 * 20 18 16 42 42 H 1.08005 * 120.02606 * 359.70138 * 23 22 21 43 43 H 1.07995 * 119.97542 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.94693 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.97253 * 179.97438 * 26 25 24 46 46 H 1.08009 * 120.02649 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8189 -0.0002 8 6 6.1528 2.7569 1.1829 9 1 6.9821 2.0733 1.2893 10 6 5.7850 3.5735 2.2451 11 7 4.7836 4.4141 2.1117 12 14 6.7137 3.4767 3.8630 13 1 8.1430 3.8083 3.6339 14 1 6.1295 4.4428 4.8277 15 1 6.6065 2.1018 4.4137 16 6 6.1309 2.9503 -1.1636 17 8 5.5196 3.1030 -2.1999 18 6 7.6372 2.9075 -1.1766 19 6 8.1549 3.5607 -2.4597 20 6 8.1067 1.4525 -1.1199 21 8 8.1437 3.6160 -0.0436 22 6 7.7497 4.9084 0.1027 23 6 8.2006 5.6543 1.1819 24 6 7.7990 6.9681 1.3281 25 6 6.9488 7.5396 0.3995 26 6 6.4976 6.7981 -0.6769 27 6 6.8964 5.4841 -0.8274 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7806 -0.8893 32 1 3.9557 0.7810 0.8908 33 1 3.6100 3.2368 0.8894 34 1 3.6107 3.2357 -0.8906 35 1 4.5266 4.9839 2.8533 36 1 9.2363 3.4381 -2.5190 37 1 7.6875 3.0868 -3.3228 38 1 7.9096 4.6227 -2.4512 39 1 7.8136 1.0130 -0.1664 40 1 7.6493 0.8911 -1.9346 41 1 9.1917 1.4166 -1.2181 42 1 8.8615 5.2071 1.9097 43 1 8.1500 7.5493 2.1678 44 1 6.6356 8.5667 0.5157 45 1 5.8333 7.2467 -1.4006 46 1 6.5434 4.9051 -1.6682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119059234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:41 Heat of formation + Delta-G solvation = -107.487990 kcal Electronic energy + Delta-G solvation = -31526.785842 eV Core-core repulsion = 27383.378328 eV Total energy + Delta-G solvation = -4143.407514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52003 -39.99495 -38.02526 -36.58469 -36.14530 -35.11150 -32.47669 -31.92155 -30.55865 -30.18775 -28.93851 -27.55898 -26.79375 -25.02345 -24.25022 -22.30177 -21.64278 -21.17529 -20.03444 -19.10709 -17.99489 -17.30899 -16.33981 -16.24220 -16.19685 -15.94840 -15.21433 -14.94408 -14.73950 -14.44572 -13.90679 -13.75948 -13.55022 -13.34537 -13.29659 -12.85871 -12.65735 -12.40570 -12.22052 -12.16780 -12.03744 -11.85992 -11.60483 -11.58850 -11.47515 -11.18394 -11.10339 -10.98621 -10.82005 -10.65907 -10.55180 -10.34546 -10.08650 -10.04833 -9.97909 -9.89192 -9.05834 -8.47500 -8.13065 -7.47806 -7.21035 -6.25041 -4.14587 2.17016 2.33899 2.66450 3.02990 3.16385 3.24281 3.24696 3.61222 3.95706 4.19755 4.56825 4.67240 5.05662 5.22488 5.27138 5.29588 5.30869 5.44009 5.61675 5.62330 5.65576 5.75449 5.83005 5.85252 5.94795 6.01144 6.06240 6.12396 6.14085 6.21704 6.27065 6.37032 6.43557 6.51676 6.62439 6.72486 6.79973 6.88495 7.13363 7.22556 7.31370 7.37827 7.57668 7.61790 7.95028 8.18230 8.26502 8.40400 9.09411 9.34048 9.80851 10.74018 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.005179 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.202038 B = 5404.920355 C = 6076.269744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.121 4.121 6 C 0.118 3.882 7 N -0.420 5.420 8 C -0.340 4.340 9 H 0.091 0.909 10 C 0.064 3.936 11 N -0.852 5.852 12 Si 0.903 3.097 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.277 1.277 16 C 0.460 3.540 17 O -0.598 6.598 18 C 0.113 3.887 19 C -0.178 4.178 20 C -0.133 4.133 21 O -0.280 6.280 22 C 0.183 3.817 23 C -0.155 4.155 24 C -0.089 4.089 25 C -0.169 4.169 26 C -0.077 4.077 27 C -0.205 4.205 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.269 0.731 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -3.634 -2.240 4.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.308 3.692 4 O -0.391 6.391 5 C -0.160 4.160 6 C -0.005 4.005 7 N -0.136 5.136 8 C -0.468 4.468 9 H 0.108 0.892 10 C -0.143 4.143 11 N -0.487 5.487 12 Si 0.730 3.270 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.248 3.752 17 O -0.485 6.485 18 C 0.072 3.928 19 C -0.235 4.235 20 C -0.190 4.190 21 O -0.193 6.193 22 C 0.137 3.863 23 C -0.174 4.174 24 C -0.107 4.107 25 C -0.188 4.188 26 C -0.095 4.095 27 C -0.223 4.223 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.844 -3.226 -2.468 4.460 hybrid contribution -0.153 0.032 0.966 0.979 sum 1.691 -3.194 -1.502 3.913 Atomic orbital electron populations 1.23158 0.77401 1.02992 1.02327 1.86539 1.22728 1.34490 1.84711 1.24092 0.92424 0.80865 0.71773 1.90654 1.67259 1.36218 1.44937 1.21871 0.85760 1.03437 1.04925 1.21357 0.82802 0.90746 1.05631 1.43245 1.04178 1.61226 1.04983 1.19301 1.15281 1.22702 0.89513 0.89168 1.25360 0.95677 0.93954 0.99349 1.69678 1.25581 1.21119 1.32337 0.86394 0.80696 0.77957 0.81970 1.19017 1.21073 1.20219 1.20806 0.89541 0.79886 0.84920 1.90568 1.69428 1.55322 1.33172 1.21677 0.91878 0.93633 0.85653 1.22547 1.00803 1.02900 0.97292 1.21732 1.01464 0.92237 1.03614 1.86154 1.66939 1.21522 1.44650 1.18537 0.91883 0.82803 0.93033 1.20192 1.05140 0.94133 0.97905 1.20659 0.97619 0.94259 0.98142 1.20732 1.01693 0.99618 0.96719 1.20725 0.97643 0.93943 0.97230 1.21758 1.01497 0.96966 1.02118 0.92160 0.92219 0.88653 0.89067 0.87575 0.86001 0.91765 0.91997 0.91980 0.90424 0.90571 0.90485 0.90987 0.91601 0.86530 0.86972 0.87447 0.87299 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.96 10.57 -39.27 -0.41 -6.37 16 3 C 0.47 8.88 7.96 36.01 0.29 9.16 16 4 O -0.50 -10.97 15.73 -18.75 -0.29 -11.26 16 5 C -0.12 -2.35 6.11 -27.88 -0.17 -2.52 16 6 C 0.12 2.76 4.43 -4.04 -0.02 2.74 16 7 N -0.42 -9.75 2.44 -114.81 -0.28 -10.02 16 8 C -0.34 -7.97 5.81 -14.94 -0.09 -8.06 16 9 H 0.09 2.09 5.78 -52.48 -0.30 1.78 16 10 C 0.06 1.54 4.66 -17.47 -0.08 1.46 16 11 N -0.85 -21.77 11.17 55.50 0.62 -21.15 16 12 Si 0.90 19.45 29.32 -169.99 -4.98 14.47 16 13 H -0.27 -5.59 6.86 56.52 0.39 -5.20 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.46 10.36 3.89 -10.99 -0.04 10.32 16 17 O -0.60 -14.67 14.52 5.55 0.08 -14.59 16 18 C 0.11 2.18 0.67 -91.78 -0.06 2.12 16 19 C -0.18 -3.06 7.83 37.16 0.29 -2.77 16 20 C -0.13 -2.13 8.72 37.15 0.32 -1.81 16 21 O -0.28 -5.81 7.62 -19.43 -0.15 -5.96 16 22 C 0.18 3.89 4.40 -39.22 -0.17 3.72 16 23 C -0.15 -3.12 9.57 -39.44 -0.38 -3.50 16 24 C -0.09 -1.64 10.04 -39.60 -0.40 -2.04 16 25 C -0.17 -3.13 10.04 -39.56 -0.40 -3.52 16 26 C -0.08 -1.54 10.04 -39.60 -0.40 -1.94 16 27 C -0.21 -4.41 6.72 -39.43 -0.27 -4.68 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.12 3.15 5.58 -51.93 -0.29 2.86 16 34 H 0.06 1.63 7.18 -51.93 -0.37 1.25 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 38 H 0.08 1.39 4.89 -51.93 -0.25 1.13 16 39 H 0.08 1.28 6.64 -51.93 -0.34 0.94 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.12 2.26 7.81 -52.48 -0.41 1.85 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 46 H 0.14 3.24 3.13 -52.48 -0.16 3.08 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -29.13 370.16 -6.68 -35.81 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.34 Total: 13.31 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.50 Total: 0.20 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.34 Total: -31.18 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.78 Total: -38.18 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.98 Total: 14.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.13 -6.68 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119059234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.682 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds