Wall clock time and date at job start Tue Mar 31 2020 19:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99934 * 2 1 4 4 O 1.20824 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00069 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47312 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47345 * 180.02562 * 6 5 3 8 8 C 1.37091 * 119.99897 * 274.76605 * 7 6 5 9 9 H 1.08003 * 119.99670 * 130.16045 * 8 7 6 10 10 C 1.38941 * 120.00321 * 310.15512 * 8 7 6 11 11 N 1.31419 * 120.00005 * 359.38304 * 10 8 7 12 12 Si 1.86799 * 120.00400 * 179.38191 * 10 8 7 13 13 H 1.48500 * 109.47196 * 60.00242 * 12 10 8 14 14 H 1.48499 * 109.47254 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46790 * 300.00052 * 12 10 8 16 16 C 1.34780 * 119.99572 * 94.76042 * 7 6 5 17 17 O 1.21289 * 120.00114 * 5.37731 * 16 7 6 18 18 C 1.50698 * 119.99769 * 185.37409 * 16 7 6 19 19 C 1.53000 * 109.47143 * 200.17106 * 18 16 7 20 20 C 1.52995 * 109.47216 * 80.17205 * 18 16 7 21 21 O 1.42904 * 109.47195 * 320.17032 * 18 16 7 22 22 C 1.35903 * 117.00274 * 303.94597 * 21 18 16 23 23 C 1.38723 * 120.05850 * 179.83690 * 22 21 18 24 24 C 1.38148 * 119.94696 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.05280 * 359.97438 * 24 23 22 26 26 C 1.38273 * 120.11207 * 0.04418 * 25 24 23 27 27 C 1.38140 * 120.05374 * 359.95504 * 26 25 24 28 28 H 1.09001 * 109.46791 * 299.99620 * 1 2 3 29 29 H 1.08992 * 109.47569 * 59.99648 * 1 2 3 30 30 H 1.08996 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46562 * 60.00147 * 5 3 2 32 32 H 1.08998 * 109.47269 * 300.00364 * 5 3 2 33 33 H 1.09002 * 109.46652 * 60.00097 * 6 5 3 34 34 H 1.09005 * 109.47105 * 300.00723 * 6 5 3 35 35 H 0.96992 * 120.00018 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47096 * 185.84307 * 19 18 16 37 37 H 1.09000 * 109.47287 * 305.84395 * 19 18 16 38 38 H 1.09000 * 109.47128 * 65.84446 * 19 18 16 39 39 H 1.09006 * 109.47323 * 295.02632 * 20 18 16 40 40 H 1.09001 * 109.47277 * 55.02713 * 20 18 16 41 41 H 1.09002 * 109.47434 * 175.03398 * 20 18 16 42 42 H 1.08005 * 120.02606 * 359.70138 * 23 22 21 43 43 H 1.07995 * 119.97542 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.94693 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.97253 * 179.97438 * 26 25 24 46 46 H 1.08009 * 120.02649 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8189 -0.0002 8 6 6.1528 2.7569 1.1829 9 1 6.9821 2.0733 1.2893 10 6 5.7850 3.5735 2.2451 11 7 4.7836 4.4141 2.1117 12 14 6.7137 3.4767 3.8630 13 1 8.1430 3.8083 3.6339 14 1 6.1295 4.4428 4.8277 15 1 6.6065 2.1018 4.4137 16 6 6.1309 2.9503 -1.1636 17 8 5.5196 3.1030 -2.1999 18 6 7.6372 2.9075 -1.1766 19 6 8.1549 3.5607 -2.4597 20 6 8.1067 1.4525 -1.1199 21 8 8.1437 3.6160 -0.0436 22 6 7.7497 4.9084 0.1027 23 6 8.2006 5.6543 1.1819 24 6 7.7990 6.9681 1.3281 25 6 6.9488 7.5396 0.3995 26 6 6.4976 6.7981 -0.6769 27 6 6.8964 5.4841 -0.8274 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7806 -0.8893 32 1 3.9557 0.7810 0.8908 33 1 3.6100 3.2368 0.8894 34 1 3.6107 3.2357 -0.8906 35 1 4.5266 4.9839 2.8533 36 1 9.2363 3.4381 -2.5190 37 1 7.6875 3.0868 -3.3228 38 1 7.9096 4.6227 -2.4512 39 1 7.8136 1.0130 -0.1664 40 1 7.6493 0.8911 -1.9346 41 1 9.1917 1.4166 -1.2181 42 1 8.8615 5.2071 1.9097 43 1 8.1500 7.5493 2.1678 44 1 6.6356 8.5667 0.5157 45 1 5.8333 7.2467 -1.4006 46 1 6.5434 4.9051 -1.6682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119059234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:41 Heat of formation + Delta-G solvation = -122.756291 kcal Electronic energy + Delta-G solvation = -31527.447925 eV Core-core repulsion = 27383.378328 eV Total energy + Delta-G solvation = -4144.069597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13473 -41.47722 -39.67126 -38.12830 -37.63990 -36.89685 -33.97801 -33.71796 -32.24881 -31.70286 -30.45849 -28.77224 -28.12383 -26.84110 -25.83403 -23.85364 -23.16676 -22.73549 -21.59752 -20.81224 -19.65292 -18.83709 -17.99018 -17.75579 -17.63590 -17.45844 -16.86799 -16.50888 -16.43060 -16.08177 -15.48569 -15.25639 -15.17142 -14.84385 -14.80993 -14.33500 -14.15638 -13.93162 -13.75746 -13.72616 -13.45072 -13.12869 -13.03109 -13.02867 -12.96728 -12.75936 -12.71300 -12.62547 -12.46991 -12.24929 -12.05188 -11.91082 -11.77169 -11.61820 -11.55007 -11.44072 -10.86719 -10.25230 -9.67885 -9.30572 -8.77848 -8.08910 -6.01998 0.62249 0.81120 1.13664 1.46529 1.49886 1.55150 1.63344 1.93461 2.33821 2.52684 2.94460 3.12033 3.24064 3.82786 3.87423 4.01048 4.09749 4.14193 4.18335 4.22180 4.29810 4.30728 4.38392 4.39516 4.59835 4.60595 4.65443 4.69087 4.72549 4.77852 4.85400 4.91058 4.97910 5.07193 5.16064 5.25188 5.29003 5.29528 5.48790 5.62048 5.69377 5.71577 5.78163 6.09658 6.15222 6.49822 6.70197 6.73611 7.25719 7.54376 8.00381 8.89446 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.005179 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.202038 B = 5404.920355 C = 6076.269744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.111 4.111 6 C 0.125 3.875 7 N -0.427 5.427 8 C -0.334 4.334 9 H 0.097 0.903 10 C 0.035 3.965 11 N -0.881 5.881 12 Si 0.945 3.055 13 H -0.255 1.255 14 H -0.293 1.293 15 H -0.270 1.270 16 C 0.457 3.543 17 O -0.626 6.626 18 C 0.109 3.891 19 C -0.171 4.171 20 C -0.129 4.129 21 O -0.285 6.285 22 C 0.171 3.829 23 C -0.168 4.168 24 C -0.088 4.088 25 C -0.169 4.169 26 C -0.094 4.094 27 C -0.223 4.223 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.145 0.855 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -4.652 -1.520 6.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.149 4.149 6 C 0.001 3.999 7 N -0.144 5.144 8 C -0.461 4.461 9 H 0.114 0.886 10 C -0.170 4.170 11 N -0.518 5.518 12 Si 0.770 3.230 13 H -0.179 1.179 14 H -0.219 1.219 15 H -0.195 1.195 16 C 0.246 3.754 17 O -0.515 6.515 18 C 0.068 3.932 19 C -0.229 4.229 20 C -0.186 4.186 21 O -0.198 6.198 22 C 0.126 3.874 23 C -0.187 4.187 24 C -0.106 4.106 25 C -0.187 4.187 26 C -0.113 4.113 27 C -0.242 4.242 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.135 0.865 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.151 -4.282 -1.749 5.597 hybrid contribution -0.644 0.348 0.688 1.005 sum 2.507 -3.934 -1.061 4.784 Atomic orbital electron populations 1.23566 0.74866 1.05836 1.02366 1.86508 1.25087 1.32431 1.83903 1.23904 0.92236 0.81220 0.71009 1.90644 1.67893 1.37538 1.46698 1.21643 0.86555 1.00782 1.05951 1.21057 0.83310 0.92869 1.02646 1.43367 1.03982 1.61576 1.05438 1.19440 1.14972 1.22318 0.89389 0.88575 1.25872 0.95987 0.93622 1.01517 1.69833 1.27070 1.22200 1.32656 0.85730 0.80224 0.77933 0.79086 1.17882 1.21935 1.19530 1.21420 0.91167 0.78702 0.84108 1.90539 1.70533 1.56360 1.34024 1.21891 0.89423 0.95654 0.86267 1.22498 1.02537 1.01684 0.96153 1.21775 1.03443 0.89731 1.03669 1.86130 1.66882 1.21465 1.45357 1.18686 0.92222 0.83115 0.93414 1.20439 1.05526 0.94922 0.97790 1.21080 0.96758 0.93940 0.98790 1.21076 1.01000 1.00833 0.95807 1.20997 0.98076 0.93875 0.98303 1.21713 1.02591 0.97653 1.02219 0.92247 0.92183 0.84382 0.87924 0.86429 0.88549 0.94989 0.92714 0.89034 0.90430 0.92111 0.91194 0.89910 0.88627 0.85874 0.83752 0.84569 0.86536 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.30 10.57 -51.47 -0.54 -11.85 16 3 C 0.47 18.08 7.96 71.24 0.57 18.65 16 4 O -0.54 -24.05 15.73 21.97 0.35 -23.70 16 5 C -0.11 -4.32 6.11 29.85 0.18 -4.14 16 6 C 0.13 6.05 4.43 86.38 0.38 6.43 16 7 N -0.43 -20.13 2.44 -635.55 -1.55 -21.68 16 8 C -0.33 -15.55 5.81 84.04 0.49 -15.07 16 9 H 0.10 4.34 5.78 -2.91 -0.02 4.32 16 10 C 0.03 1.65 4.66 84.92 0.40 2.05 16 11 N -0.88 -45.84 11.17 21.66 0.24 -45.60 16 12 Si 0.95 38.92 29.32 68.60 2.01 40.93 16 13 H -0.25 -9.98 6.86 99.48 0.68 -9.30 16 14 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 C 0.46 20.81 3.89 87.66 0.34 21.15 16 17 O -0.63 -31.59 14.52 -3.06 -0.04 -31.64 16 18 C 0.11 4.11 0.67 -11.54 -0.01 4.10 16 19 C -0.17 -5.74 7.83 71.98 0.56 -5.18 16 20 C -0.13 -3.86 8.72 71.98 0.63 -3.23 16 21 O -0.29 -11.58 7.62 -92.45 -0.70 -12.28 16 22 C 0.17 7.21 4.40 22.51 0.10 7.30 16 23 C -0.17 -6.55 9.57 22.36 0.21 -6.34 16 24 C -0.09 -3.07 10.04 22.26 0.22 -2.85 16 25 C -0.17 -6.01 10.04 22.29 0.22 -5.78 16 26 C -0.09 -3.79 10.04 22.25 0.22 -3.56 16 27 C -0.22 -9.75 6.72 22.37 0.15 -9.60 16 28 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 32 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 33 H 0.10 5.20 5.58 -2.39 -0.01 5.18 16 34 H 0.03 1.71 7.18 -2.38 -0.02 1.69 16 35 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.57 7.68 -2.39 -0.02 2.55 16 38 H 0.06 2.23 4.89 -2.39 -0.01 2.22 16 39 H 0.07 2.19 6.64 -2.38 -0.02 2.17 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.12 4.55 7.81 -2.91 -0.02 4.53 16 43 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 46 H 0.13 5.88 3.13 -2.91 -0.01 5.88 16 Total: -1.00 -64.47 370.16 6.60 -57.87 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: 0.97 Total: 42.21 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.87 Total: 5.74 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.31 Total: -67.27 kcal Atomic # 8 Polarization: -78.53 SS G_CDS: -0.95 Total: -79.47 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.01 Total: 40.93 kcal Total: -64.47 6.60 -57.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119059234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.887 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds