Wall clock time and date at job start Tue Mar 31 2020 19:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39898 * 109.47088 * 2 1 4 4 F 1.39899 * 109.47085 * 239.99980 * 2 1 3 5 5 C 1.52998 * 109.47200 * 119.99683 * 2 1 3 6 6 C 1.50695 * 109.47385 * 179.97438 * 5 2 1 7 7 O 1.21290 * 120.00085 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00217 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99790 * 180.02562 * 8 6 5 10 10 H 1.08993 * 110.27143 * 35.63792 * 9 8 6 11 11 C 1.53994 * 110.30715 * 273.54614 * 9 8 6 12 12 N 1.47903 * 107.05424 * 242.21042 * 11 9 8 13 13 C 1.46904 * 111.00038 * 214.15460 * 12 11 9 14 14 C 1.50700 * 109.47192 * 170.00163 * 13 12 11 15 15 O 1.21293 * 119.99810 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00219 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47028 * 59.99886 * 21 19 17 23 23 H 1.48497 * 109.47531 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47039 * 300.00633 * 21 19 17 25 25 C 1.48527 * 105.82321 * 334.67235 * 12 11 9 26 26 C 1.54594 * 110.39007 * 157.78064 * 9 8 6 27 27 H 1.09002 * 110.72384 * 22.55912 * 26 9 8 28 28 O 1.42898 * 110.72596 * 259.27598 * 26 9 8 29 29 H 1.08996 * 109.47007 * 300.00354 * 1 2 3 30 30 H 1.09005 * 109.46933 * 59.99989 * 1 2 3 31 31 H 1.08994 * 109.47326 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47288 * 60.00089 * 5 2 1 33 33 H 1.09001 * 109.47483 * 300.00498 * 5 2 1 34 34 H 0.96997 * 119.99656 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.91602 * 122.86106 * 11 9 8 36 36 H 1.08999 * 110.08310 * 1.65652 * 11 9 8 37 37 H 1.09009 * 109.46542 * 50.00194 * 13 12 11 38 38 H 1.08998 * 109.47050 * 290.00728 * 13 12 11 39 39 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 40 40 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.66931 * 157.64305 * 25 12 11 42 42 H 1.09001 * 110.66633 * 280.76824 * 25 12 11 43 43 H 0.96705 * 114.00234 * 180.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7217 1.2490 7 8 4.1535 -0.1966 0.3393 8 7 4.2209 -1.3058 2.2595 9 6 5.6859 -1.3059 2.2595 10 1 6.0635 -0.3743 1.8381 11 6 6.2203 -2.5092 1.4608 12 7 6.9892 -3.3492 2.4045 13 6 8.1326 -3.9827 1.7342 14 6 9.0259 -4.6250 2.7640 15 8 8.7380 -4.5619 3.9406 16 7 10.1473 -5.2653 2.3780 17 6 10.9628 -5.8449 3.3154 18 1 10.7068 -5.7880 4.3631 19 6 12.1187 -6.5054 2.9175 20 7 12.4303 -6.5741 1.6427 21 14 13.2302 -7.2945 4.1946 22 1 12.4684 -8.3250 4.9449 23 1 14.3889 -7.9302 3.5174 24 1 13.7172 -6.2552 5.1369 25 6 7.4440 -2.4346 3.4828 26 6 6.2246 -1.5027 3.6951 27 1 5.4766 -1.9839 4.3252 28 8 6.6340 -0.2543 4.2572 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1393 34 1 3.7358 -1.7262 2.9868 35 1 6.8707 -2.1625 0.6577 36 1 5.3905 -3.0811 1.0457 37 1 8.6956 -3.2278 1.1851 38 1 7.7721 -4.7427 1.0411 39 1 10.3773 -5.3162 1.4371 40 1 13.2375 -7.0350 1.3649 41 1 7.6649 -2.9925 4.3928 42 1 8.3140 -1.8625 3.1604 43 1 6.9804 -0.3230 5.1575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195949026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:45 Heat of formation + Delta-G solvation = -207.481361 kcal Electronic energy + Delta-G solvation = -29233.949577 eV Core-core repulsion = 24564.269246 eV Total energy + Delta-G solvation = -4669.680331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.10561 -47.09003 -40.34276 -39.06003 -37.81980 -35.80143 -34.56325 -33.88716 -33.60044 -31.36532 -30.45297 -28.98630 -27.82930 -26.35712 -24.27362 -22.65254 -21.63958 -20.99509 -20.48751 -19.31029 -18.04366 -17.87614 -17.77757 -17.59990 -16.94936 -16.27650 -16.03811 -15.78807 -15.48797 -14.99045 -14.76978 -14.70012 -14.16372 -13.99557 -13.84695 -13.79244 -13.44840 -13.26337 -13.22318 -13.07582 -13.03277 -12.80671 -12.52073 -12.46528 -12.35839 -12.09622 -11.72767 -11.58044 -11.37625 -11.34361 -11.01914 -10.66358 -10.45743 -10.29073 -10.26112 -9.95193 -9.52840 -9.34814 -8.47212 -8.09505 -7.97704 -6.46347 -3.87766 2.33871 2.69547 3.16322 3.23029 3.26675 3.40070 3.67409 3.77881 3.83405 4.02415 4.05002 4.11364 4.33563 4.47126 4.63336 4.69504 4.78884 4.84944 4.97151 5.07192 5.10436 5.20691 5.29977 5.33256 5.34185 5.39129 5.66788 5.77347 5.79777 5.86307 6.07249 6.19441 6.27485 6.45728 7.00418 7.12839 7.19893 7.50200 7.54329 7.93289 7.99878 8.55272 9.12026 9.47774 9.98550 10.71008 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.002093 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.910375 B =13377.345628 C =13959.907004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.306 3.694 3 F -0.193 7.193 4 F -0.192 7.192 5 C -0.190 4.190 6 C 0.513 3.487 7 O -0.519 6.519 8 N -0.715 5.715 9 C 0.144 3.856 10 H 0.105 0.895 11 C 0.026 3.974 12 N -0.490 5.490 13 C 0.035 3.965 14 C 0.441 3.559 15 O -0.585 6.585 16 N -0.559 5.559 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.899 5.899 21 Si 0.932 3.068 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.010 3.990 26 C 0.091 3.909 27 H 0.076 0.924 28 O -0.562 6.562 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.402 0.598 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.125 0.875 42 H 0.050 0.950 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.793 11.245 -0.181 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.270 3.730 3 F -0.174 7.174 4 F -0.173 7.173 5 C -0.230 4.230 6 C 0.298 3.702 7 O -0.394 6.394 8 N -0.367 5.367 9 C 0.038 3.962 10 H 0.123 0.877 11 C -0.103 4.103 12 N -0.216 5.216 13 C -0.096 4.096 14 C 0.227 3.773 15 O -0.470 6.470 16 N -0.195 5.195 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.540 5.540 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.118 4.118 26 C 0.031 3.969 27 H 0.093 0.907 28 O -0.368 6.368 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.237 0.763 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.068 0.932 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.840 11.396 -0.575 25.532 hybrid contribution 1.348 -0.323 0.337 1.427 sum -21.492 11.073 -0.239 24.178 Atomic orbital electron populations 1.22804 0.91216 1.05592 1.05672 1.20598 0.93036 0.76081 0.83331 1.93052 1.90576 1.36955 1.96773 1.93057 1.90560 1.80718 1.52922 1.22863 0.94980 1.05282 0.99923 1.20183 0.89160 0.78437 0.82449 1.90815 1.69816 1.43779 1.35005 1.45939 1.06883 1.58597 1.25315 1.21716 0.79225 1.00003 0.95220 0.87746 1.23353 0.99013 0.92922 0.95011 1.64592 1.20853 1.27126 1.09005 1.22138 0.91666 0.99212 0.96628 1.19652 0.83466 0.84814 0.89359 1.90409 1.74115 1.64087 1.18382 1.41850 1.19754 1.47694 1.10154 1.19645 1.01937 1.30425 0.91091 0.87897 1.25292 0.97981 0.97718 0.96921 1.69608 1.26575 1.43229 1.14603 0.85898 0.79003 0.79296 0.79898 1.19851 1.20943 1.19895 1.24138 0.95010 0.93346 0.99300 1.23009 0.96476 0.84318 0.93095 0.90665 1.86465 1.85295 1.30124 1.34889 0.89142 0.89620 0.89072 0.85709 0.85844 0.76306 0.92613 0.89695 0.92992 0.88929 0.77362 0.91711 0.85677 0.93207 0.76756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 9.38 37.16 0.35 -0.52 16 2 C 0.31 2.69 1.85 -26.73 -0.05 2.64 16 3 F -0.19 -2.31 16.15 2.25 0.04 -2.27 16 4 F -0.19 -2.31 16.14 2.25 0.04 -2.27 16 5 C -0.19 -1.25 5.30 -27.89 -0.15 -1.39 16 6 C 0.51 5.77 7.59 -10.99 -0.08 5.68 16 7 O -0.52 -8.33 14.53 5.55 0.08 -8.25 16 8 N -0.72 -7.13 5.03 -52.49 -0.26 -7.39 16 9 C 0.14 1.84 3.06 -66.57 -0.20 1.64 16 10 H 0.10 1.58 7.57 -51.93 -0.39 1.19 16 11 C 0.03 0.37 6.48 -2.75 -0.02 0.35 16 12 N -0.49 -8.01 5.26 -231.89 -1.22 -9.23 16 13 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 14 C 0.44 10.14 7.49 -10.98 -0.08 10.05 16 15 O -0.58 -14.83 13.10 5.55 0.07 -14.76 16 16 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 C 0.01 0.16 5.02 -1.90 -0.01 0.15 16 26 C 0.09 1.13 4.15 -24.87 -0.10 1.03 16 27 H 0.08 0.80 7.74 -51.93 -0.40 0.40 16 28 O -0.56 -6.78 13.40 -35.23 -0.47 -7.25 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.76 8.35 -40.82 -0.34 2.42 16 35 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 36 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.05 0.88 7.81 -51.92 -0.41 0.47 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.13 2.30 5.97 -51.93 -0.31 1.99 16 42 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 43 H 0.38 3.14 9.12 45.56 0.42 3.55 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -35.50 366.14 -6.21 -41.72 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -0.62 Total: 12.36 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.82 Total: -54.18 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.32 Total: -30.26 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.50 -6.21 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195949026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.764 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds