Wall clock time and date at job start Tue Mar 31 2020 19:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39898 * 109.47088 * 2 1 4 4 F 1.39899 * 109.47085 * 239.99980 * 2 1 3 5 5 C 1.52998 * 109.47200 * 119.99683 * 2 1 3 6 6 C 1.50695 * 109.47385 * 179.97438 * 5 2 1 7 7 O 1.21290 * 120.00085 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00217 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99790 * 180.02562 * 8 6 5 10 10 H 1.08993 * 110.27143 * 35.63792 * 9 8 6 11 11 C 1.53994 * 110.30715 * 273.54614 * 9 8 6 12 12 N 1.47903 * 107.05424 * 242.21042 * 11 9 8 13 13 C 1.46904 * 111.00038 * 214.15460 * 12 11 9 14 14 C 1.50700 * 109.47192 * 170.00163 * 13 12 11 15 15 O 1.21293 * 119.99810 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00219 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47028 * 59.99886 * 21 19 17 23 23 H 1.48497 * 109.47531 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47039 * 300.00633 * 21 19 17 25 25 C 1.48527 * 105.82321 * 334.67235 * 12 11 9 26 26 C 1.54594 * 110.39007 * 157.78064 * 9 8 6 27 27 H 1.09002 * 110.72384 * 22.55912 * 26 9 8 28 28 O 1.42898 * 110.72596 * 259.27598 * 26 9 8 29 29 H 1.08996 * 109.47007 * 300.00354 * 1 2 3 30 30 H 1.09005 * 109.46933 * 59.99989 * 1 2 3 31 31 H 1.08994 * 109.47326 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47288 * 60.00089 * 5 2 1 33 33 H 1.09001 * 109.47483 * 300.00498 * 5 2 1 34 34 H 0.96997 * 119.99656 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.91602 * 122.86106 * 11 9 8 36 36 H 1.08999 * 110.08310 * 1.65652 * 11 9 8 37 37 H 1.09009 * 109.46542 * 50.00194 * 13 12 11 38 38 H 1.08998 * 109.47050 * 290.00728 * 13 12 11 39 39 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 40 40 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.66931 * 157.64305 * 25 12 11 42 42 H 1.09001 * 110.66633 * 280.76824 * 25 12 11 43 43 H 0.96705 * 114.00234 * 180.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7217 1.2490 7 8 4.1535 -0.1966 0.3393 8 7 4.2209 -1.3058 2.2595 9 6 5.6859 -1.3059 2.2595 10 1 6.0635 -0.3743 1.8381 11 6 6.2203 -2.5092 1.4608 12 7 6.9892 -3.3492 2.4045 13 6 8.1326 -3.9827 1.7342 14 6 9.0259 -4.6250 2.7640 15 8 8.7380 -4.5619 3.9406 16 7 10.1473 -5.2653 2.3780 17 6 10.9628 -5.8449 3.3154 18 1 10.7068 -5.7880 4.3631 19 6 12.1187 -6.5054 2.9175 20 7 12.4303 -6.5741 1.6427 21 14 13.2302 -7.2945 4.1946 22 1 12.4684 -8.3250 4.9449 23 1 14.3889 -7.9302 3.5174 24 1 13.7172 -6.2552 5.1369 25 6 7.4440 -2.4346 3.4828 26 6 6.2246 -1.5027 3.6951 27 1 5.4766 -1.9839 4.3252 28 8 6.6340 -0.2543 4.2572 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1393 34 1 3.7358 -1.7262 2.9868 35 1 6.8707 -2.1625 0.6577 36 1 5.3905 -3.0811 1.0457 37 1 8.6956 -3.2278 1.1851 38 1 7.7721 -4.7427 1.0411 39 1 10.3773 -5.3162 1.4371 40 1 13.2375 -7.0350 1.3649 41 1 7.6649 -2.9925 4.3928 42 1 8.3140 -1.8625 3.1604 43 1 6.9804 -0.3230 5.1575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195949026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:44 Heat of formation + Delta-G solvation = -239.254368 kcal Electronic energy + Delta-G solvation = -29235.327358 eV Core-core repulsion = 24564.269246 eV Total energy + Delta-G solvation = -4671.058112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83570 -47.86146 -41.41724 -40.41380 -39.29491 -36.95057 -36.01978 -35.40272 -34.18334 -33.33575 -31.59889 -29.79116 -28.90189 -27.83805 -25.99420 -23.40544 -22.81449 -21.91728 -21.48839 -21.08927 -19.89742 -18.80770 -18.56282 -18.50105 -17.82585 -17.74666 -16.98841 -16.76808 -16.67464 -16.37888 -16.23541 -16.03040 -15.62912 -15.37743 -14.95599 -14.75717 -14.53083 -14.37124 -14.22229 -13.92420 -13.85108 -13.72531 -13.55146 -13.48438 -13.34314 -13.07535 -13.03555 -13.01621 -12.86769 -12.61970 -12.44225 -12.13989 -11.97488 -11.79528 -11.47685 -11.26128 -10.92960 -10.37230 -10.15046 -10.03168 -9.49042 -8.47849 -5.97017 1.39124 1.41591 1.51601 1.52744 1.90860 2.00167 2.26531 2.61485 2.84043 3.06693 3.18405 3.19127 3.26838 3.45673 3.51638 3.56786 3.80047 3.96601 4.04055 4.17078 4.24784 4.30704 4.38249 4.40779 4.45231 4.47284 4.59802 4.69107 4.74794 4.80523 4.88021 5.08158 5.08987 5.35537 5.39706 5.68580 5.77314 6.01168 6.42535 6.56967 6.74823 7.09923 7.15272 7.52114 8.06224 8.69268 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.002093 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.910375 B =13377.345628 C =13959.907004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.284 3.716 3 F -0.218 7.218 4 F -0.218 7.218 5 C -0.179 4.179 6 C 0.505 3.495 7 O -0.575 6.575 8 N -0.701 5.701 9 C 0.149 3.851 10 H 0.079 0.921 11 C 0.031 3.969 12 N -0.495 5.495 13 C 0.044 3.956 14 C 0.442 3.558 15 O -0.609 6.609 16 N -0.572 5.572 17 C -0.332 4.332 18 H 0.084 0.916 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.271 1.271 25 C 0.011 3.989 26 C 0.109 3.891 27 H 0.103 0.897 28 O -0.572 6.572 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.421 0.579 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.100 0.900 42 H 0.030 0.970 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.912 10.932 0.850 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.247 3.753 3 F -0.200 7.200 4 F -0.199 7.199 5 C -0.219 4.219 6 C 0.292 3.708 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.043 3.957 10 H 0.098 0.902 11 C -0.098 4.098 12 N -0.220 5.220 13 C -0.088 4.088 14 C 0.229 3.771 15 O -0.496 6.496 16 N -0.208 5.208 17 C -0.461 4.461 18 H 0.102 0.898 19 C -0.215 4.215 20 N -0.562 5.562 21 Si 0.819 3.181 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.196 1.196 25 C -0.118 4.118 26 C 0.049 3.951 27 H 0.120 0.880 28 O -0.380 6.380 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.048 0.952 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -24.995 11.078 0.486 27.344 hybrid contribution 1.971 -0.169 0.026 1.979 sum -23.024 10.909 0.512 25.483 Atomic orbital electron populations 1.22821 0.87545 1.07376 1.06582 1.21447 0.95628 0.74928 0.83264 1.92996 1.91165 1.38932 1.96864 1.93001 1.91156 1.81125 1.54625 1.22987 0.90928 1.07713 1.00253 1.21075 0.91192 0.77069 0.81426 1.90799 1.71343 1.46137 1.37136 1.45780 1.05568 1.58276 1.25792 1.21422 0.81128 0.98162 0.95036 0.90248 1.23348 0.98776 0.93135 0.94497 1.64591 1.20050 1.27837 1.09540 1.22049 0.91577 0.99831 0.95309 1.20504 0.83085 0.83472 0.90033 1.90404 1.74616 1.64594 1.19986 1.41931 1.20451 1.48540 1.09910 1.19654 1.03404 1.32240 0.90830 0.89810 1.26099 0.98779 0.97695 0.98944 1.69681 1.27082 1.43554 1.15898 0.84952 0.77271 0.78354 0.77549 1.19488 1.19763 1.19606 1.24002 0.96227 0.93522 0.98003 1.22836 0.95103 0.83813 0.93366 0.87968 1.86442 1.85405 1.29779 1.36396 0.86762 0.90256 0.86811 0.82071 0.82103 0.74057 0.93342 0.88647 0.91844 0.87029 0.77127 0.91309 0.88185 0.95164 0.74781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 9.38 71.98 0.68 -0.42 16 2 C 0.28 4.49 1.85 30.59 0.06 4.55 16 3 F -0.22 -5.16 16.15 44.97 0.73 -4.44 16 4 F -0.22 -5.18 16.14 44.97 0.73 -4.46 16 5 C -0.18 -1.75 5.30 29.85 0.16 -1.59 16 6 C 0.50 10.49 7.59 87.65 0.67 11.16 16 7 O -0.58 -18.57 14.53 -3.06 -0.04 -18.61 16 8 N -0.70 -12.32 5.03 -438.36 -2.21 -14.53 16 9 C 0.15 3.67 3.06 45.87 0.14 3.81 16 10 H 0.08 2.42 7.57 -2.39 -0.02 2.40 16 11 C 0.03 0.85 6.48 86.45 0.56 1.41 16 12 N -0.49 -15.82 5.26 -887.56 -4.67 -20.49 16 13 C 0.04 1.56 5.52 85.56 0.47 2.03 16 14 C 0.44 20.61 7.49 87.66 0.66 21.27 16 15 O -0.61 -31.59 13.10 -3.07 -0.04 -31.63 16 16 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 20 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 21 Si 1.00 42.43 29.55 68.60 2.03 44.46 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.01 0.35 5.02 86.65 0.44 0.78 16 26 C 0.11 2.54 4.15 31.80 0.13 2.67 16 27 H 0.10 1.87 7.74 -2.39 -0.02 1.85 16 28 O -0.57 -13.04 13.40 -148.98 -2.00 -15.03 16 29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.16 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.42 4.19 8.35 -92.71 -0.77 3.42 16 35 H 0.05 1.39 7.57 -2.39 -0.02 1.37 16 36 H 0.10 2.39 7.93 -2.39 -0.02 2.38 16 37 H 0.06 2.13 7.81 -2.38 -0.02 2.11 16 38 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 40 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.10 3.74 5.97 -2.39 -0.01 3.72 16 42 H 0.03 1.06 8.02 -2.39 -0.02 1.04 16 43 H 0.40 5.97 9.12 -74.05 -0.68 5.29 16 Total: -1.00 -80.72 366.14 -2.68 -83.39 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -1.09 Total: 34.06 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 5.23 Total: 27.60 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -8.21 Total: -115.34 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -2.08 Total: -65.28 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 1.45 Total: -8.89 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -80.72 -2.68 -83.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195949026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.860 kcal (2) G-P(sol) polarization free energy of solvation -80.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds