Wall clock time and date at job start Tue Mar 31 2020 19:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47377 * 2 1 4 4 C 1.50690 * 109.47373 * 180.02562 * 3 2 1 5 5 O 1.21344 * 120.00249 * 0.02562 * 4 3 2 6 6 C 1.46473 * 120.00235 * 180.02562 * 4 3 2 7 7 C 1.40282 * 120.14836 * 0.02562 * 6 4 3 8 8 C 1.37750 * 119.87782 * 179.97438 * 7 6 4 9 9 O 1.36069 * 119.90829 * 179.97438 * 8 7 6 10 10 C 1.39679 * 120.18533 * 359.97438 * 8 7 6 11 11 O 1.35745 * 119.85236 * 180.02562 * 10 8 7 12 12 C 1.38609 * 120.30302 * 359.76606 * 10 8 7 13 13 C 1.38425 * 120.11689 * 0.50900 * 12 10 8 14 14 O 1.35671 * 120.09641 * 179.74724 * 13 12 10 15 15 C 1.42904 * 116.99578 * 354.57161 * 14 13 12 16 16 H 1.09005 * 110.63806 * 321.78406 * 15 14 13 17 17 C 1.55155 * 110.72034 * 198.44999 * 15 14 13 18 18 C 1.55133 * 101.48789 * 205.96839 * 17 15 14 19 19 N 1.47423 * 104.71897 * 37.29049 * 18 17 15 20 20 C 1.36936 * 125.64595 * 155.81882 * 19 18 17 21 21 H 1.08002 * 120.00254 * 209.84892 * 20 19 18 22 22 C 1.38815 * 120.00137 * 29.84281 * 20 19 18 23 23 N 1.31616 * 120.00365 * 201.04103 * 22 20 19 24 24 Si 1.86804 * 119.99742 * 21.04358 * 22 20 19 25 25 H 1.48502 * 109.46980 * 274.45387 * 24 22 20 26 26 H 1.48502 * 109.47097 * 34.45014 * 24 22 20 27 27 H 1.48493 * 109.47061 * 154.45363 * 24 22 20 28 28 C 1.47019 * 108.70520 * 335.55879 * 19 18 17 29 29 H 1.08994 * 109.46697 * 299.99888 * 1 2 3 30 30 H 1.08996 * 109.46825 * 59.99918 * 1 2 3 31 31 H 1.09004 * 109.46860 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46875 * 240.00012 * 2 1 3 33 33 H 1.08996 * 109.47175 * 120.00498 * 2 1 3 34 34 H 1.08999 * 109.47115 * 59.99640 * 3 2 1 35 35 H 1.09005 * 109.47145 * 300.00457 * 3 2 1 36 36 H 1.08004 * 120.06068 * 0.02562 * 7 6 4 37 37 H 0.96703 * 113.99306 * 90.00337 * 9 8 7 38 38 H 0.96707 * 114.00152 * 89.99939 * 11 10 8 39 39 H 1.07999 * 119.94363 * 180.25949 * 12 10 8 40 40 H 1.09004 * 111.00202 * 324.20784 * 17 15 14 41 41 H 1.09003 * 111.00840 * 88.01979 * 17 15 14 42 42 H 1.08996 * 110.49500 * 278.45409 * 18 17 15 43 43 H 1.08995 * 110.34043 * 156.05841 * 18 17 15 44 44 H 0.97003 * 119.99893 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88036 * 120.70576 * 28 19 18 46 46 H 1.09004 * 109.87466 * 241.71070 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1538 0.3916 -0.0015 6 6 4.2794 2.7109 -0.0002 7 6 3.5812 3.9276 0.0014 8 6 4.2756 5.1173 0.0023 9 8 3.5990 6.2978 0.0033 10 6 5.6724 5.1151 0.0023 11 8 6.3499 6.2914 0.0037 12 6 6.3700 3.9174 0.0062 13 6 5.6849 2.7146 -0.0005 14 8 6.3681 1.5424 -0.0019 15 6 7.7903 1.6208 -0.1167 16 1 8.0769 2.4134 -0.8080 17 6 8.3809 0.2573 -0.5634 18 6 9.8176 0.3381 0.0164 19 7 9.6610 1.0263 1.3107 20 6 10.5158 0.9271 2.3758 21 1 10.1393 1.0348 3.3824 22 6 11.8664 0.6878 2.1620 23 7 12.6074 0.1882 3.1282 24 14 12.6322 1.0751 0.5028 25 1 12.4405 -0.0787 -0.4123 26 1 11.9806 2.2782 -0.0745 27 1 14.0842 1.3336 0.6760 28 6 8.4384 1.8416 1.2663 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.5012 3.9316 0.0027 37 1 3.4036 6.6383 0.8871 38 1 6.5463 6.6312 0.8876 39 1 7.4500 3.9225 0.0103 40 1 7.8251 -0.5716 -0.1252 41 1 8.4034 0.1785 -1.6504 42 1 10.4640 0.9155 -0.6445 43 1 10.2228 -0.6627 0.1654 44 1 13.5510 0.0207 2.9786 45 1 7.7527 1.5246 2.0520 46 1 8.6901 2.8942 1.3965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233497564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:18 Heat of formation + Delta-G solvation = -108.733951 kcal Electronic energy + Delta-G solvation = -29324.502997 eV Core-core repulsion = 25181.041454 eV Total energy + Delta-G solvation = -4143.461543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01726 -39.35846 -39.14681 -37.22013 -36.98571 -35.50380 -34.56826 -32.44328 -31.15309 -30.02575 -28.96441 -28.40251 -27.71345 -24.51372 -24.14959 -22.92727 -21.79089 -21.04987 -20.44494 -19.93407 -19.17095 -18.20194 -17.40385 -17.16538 -16.64957 -16.17922 -15.87998 -15.65375 -15.37540 -15.04855 -14.81506 -14.56206 -14.42257 -13.99850 -13.75239 -13.56883 -13.48379 -13.11981 -12.79541 -12.43500 -12.35104 -12.20927 -12.04545 -11.95028 -11.90065 -11.59983 -11.50995 -11.37354 -11.03141 -10.96623 -10.71013 -10.65576 -10.35841 -10.27386 -10.16212 -9.62814 -9.60320 -9.17977 -8.67185 -8.24408 -7.02062 -6.04771 -3.43583 0.35821 1.00498 2.22276 3.07656 3.30024 3.32175 3.42268 3.45618 3.71408 3.80580 3.93574 4.46992 4.47734 4.65975 4.73587 4.77369 4.89736 4.91710 4.97076 5.09345 5.18857 5.23212 5.25367 5.29765 5.38237 5.38897 5.39425 5.51448 5.54523 5.77046 5.79656 5.88698 5.91781 5.94168 5.95129 6.08101 6.16771 6.20835 6.34783 6.45997 6.53416 6.66485 7.09682 7.33967 7.50858 7.59022 7.72720 8.24909 8.75520 9.58989 10.10374 11.11115 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003383 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.212436 B = 8274.152596 C =10029.468504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.164 4.164 4 C 0.391 3.609 5 O -0.427 6.427 6 C -0.209 4.209 7 C -0.047 4.047 8 C 0.019 3.981 9 O -0.484 6.484 10 C 0.160 3.840 11 O -0.487 6.487 12 C -0.238 4.238 13 C 0.208 3.792 14 O -0.265 6.265 15 C 0.059 3.941 16 H 0.081 0.919 17 C -0.119 4.119 18 C 0.118 3.882 19 N -0.602 5.602 20 C -0.249 4.249 21 H 0.087 0.913 22 C 0.033 3.967 23 N -0.902 5.902 24 Si 0.881 3.119 25 H -0.282 1.282 26 H -0.275 1.275 27 H -0.299 1.299 28 C 0.115 3.885 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.382 0.618 38 H 0.396 0.604 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.066 0.934 44 H 0.265 0.735 45 H 0.045 0.955 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 8.779 -6.703 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.201 4.201 4 C 0.267 3.733 5 O -0.300 6.300 6 C -0.210 4.210 7 C -0.065 4.065 8 C -0.026 4.026 9 O -0.293 6.293 10 C 0.114 3.886 11 O -0.298 6.298 12 C -0.257 4.257 13 C 0.159 3.841 14 O -0.175 6.175 15 C 0.003 3.997 16 H 0.099 0.901 17 C -0.157 4.157 18 C -0.007 4.007 19 N -0.330 5.330 20 C -0.376 4.376 21 H 0.105 0.895 22 C -0.168 4.168 23 N -0.544 5.544 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.201 1.201 27 H -0.226 1.226 28 C -0.011 4.011 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.236 0.764 38 H 0.254 0.746 39 H 0.168 0.832 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.700 7.826 -7.757 25.233 hybrid contribution 0.836 0.897 0.123 1.232 sum -21.864 8.722 -7.635 24.747 Atomic orbital electron populations 1.21785 0.95574 1.01890 1.01686 1.21346 0.95403 0.95179 1.03528 1.22058 0.93916 0.99829 1.04312 1.22004 0.90955 0.87406 0.72914 1.90636 1.71433 1.33473 1.34503 1.19825 0.90642 0.95582 1.14996 1.21352 1.00407 0.89709 0.95071 1.18404 0.88968 0.85986 1.09216 1.84998 1.75965 1.35347 1.32956 1.18781 0.89041 0.85420 0.95398 1.84785 1.76098 1.35322 1.33569 1.21652 1.02100 0.90962 1.10997 1.19111 0.90639 0.85501 0.88893 1.86389 1.20604 1.25963 1.84568 1.23814 0.76701 1.00333 0.98849 0.90094 1.22884 0.96989 0.95522 1.00345 1.22004 0.93153 0.97630 0.87957 1.44581 1.25838 1.49679 1.12930 1.18556 0.87170 1.46140 0.85734 0.89524 1.25291 0.95808 0.98696 0.96968 1.69827 1.07376 1.44001 1.33186 0.86881 0.77749 0.79277 0.85046 1.20866 1.20084 1.22642 1.21892 0.90396 0.95164 0.93637 0.92705 0.92745 0.92509 0.91318 0.91223 0.88607 0.88628 0.83576 0.76370 0.74624 0.83166 0.89384 0.90757 0.95674 0.91557 0.92470 0.93702 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -1.02 5.22 -26.73 -0.14 -1.16 16 3 C -0.16 -1.32 4.30 -27.89 -0.12 -1.44 16 4 C 0.39 4.84 7.09 -31.00 -0.22 4.62 16 5 O -0.43 -6.99 14.77 -16.50 -0.24 -7.23 16 6 C -0.21 -2.57 5.88 -104.94 -0.62 -3.19 16 7 C -0.05 -0.44 9.38 -38.99 -0.37 -0.81 16 8 C 0.02 0.20 6.70 -39.22 -0.26 -0.06 16 9 O -0.48 -4.24 13.28 -34.65 -0.46 -4.70 16 10 C 0.16 1.86 6.72 -38.91 -0.26 1.60 16 11 O -0.49 -5.16 13.26 -33.64 -0.45 -5.61 16 12 C -0.24 -3.17 8.69 -39.38 -0.34 -3.52 16 13 C 0.21 3.03 6.64 -38.64 -0.26 2.77 16 14 O -0.27 -4.51 7.93 -40.71 -0.32 -4.84 16 15 C 0.06 1.03 2.77 -24.90 -0.07 0.96 16 16 H 0.08 1.28 6.59 -51.93 -0.34 0.94 16 17 C -0.12 -2.11 6.82 -24.46 -0.17 -2.28 16 18 C 0.12 2.54 4.87 -2.41 -0.01 2.53 16 19 N -0.60 -14.68 3.03 -169.94 -0.52 -15.20 16 20 C -0.25 -7.07 10.51 -15.06 -0.16 -7.23 16 21 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 22 C 0.03 0.95 5.43 -17.43 -0.09 0.85 16 23 N -0.90 -27.57 13.97 55.49 0.78 -26.80 16 24 Si 0.88 22.28 24.55 -169.99 -4.17 18.10 16 25 H -0.28 -6.86 6.98 56.52 0.39 -6.46 16 26 H -0.28 -6.85 6.98 56.52 0.39 -6.45 16 27 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 28 C 0.11 2.32 6.50 -3.07 -0.02 2.30 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.15 0.93 7.04 -52.48 -0.37 0.56 16 37 H 0.38 1.42 9.07 45.56 0.41 1.84 16 38 H 0.40 2.22 9.06 45.56 0.41 2.63 16 39 H 0.15 2.07 5.29 -52.49 -0.28 1.79 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.56 5.50 -51.93 -0.29 0.27 16 43 H 0.07 1.50 7.85 -51.93 -0.41 1.09 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 46 H 0.03 0.68 7.42 -51.93 -0.39 0.29 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -35.99 374.62 -7.51 -43.50 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.03 Total: 1.79 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.74 Total: -4.66 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.26 Total: -41.99 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.47 Total: -22.38 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.17 Total: 18.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.99 -7.51 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233497564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.238 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds