Wall clock time and date at job start Tue Mar 31 2020 19:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47377 * 2 1 4 4 C 1.50690 * 109.47373 * 180.02562 * 3 2 1 5 5 O 1.21344 * 120.00249 * 0.02562 * 4 3 2 6 6 C 1.46473 * 120.00235 * 180.02562 * 4 3 2 7 7 C 1.40282 * 120.14836 * 0.02562 * 6 4 3 8 8 C 1.37750 * 119.87782 * 179.97438 * 7 6 4 9 9 O 1.36069 * 119.90829 * 179.97438 * 8 7 6 10 10 C 1.39679 * 120.18533 * 359.97438 * 8 7 6 11 11 O 1.35745 * 119.85236 * 180.02562 * 10 8 7 12 12 C 1.38609 * 120.30302 * 359.76606 * 10 8 7 13 13 C 1.38425 * 120.11689 * 0.50900 * 12 10 8 14 14 O 1.35671 * 120.09641 * 179.74724 * 13 12 10 15 15 C 1.42904 * 116.99578 * 354.57161 * 14 13 12 16 16 H 1.09005 * 110.63806 * 321.78406 * 15 14 13 17 17 C 1.55155 * 110.72034 * 198.44999 * 15 14 13 18 18 C 1.55133 * 101.48789 * 205.96839 * 17 15 14 19 19 N 1.47423 * 104.71897 * 37.29049 * 18 17 15 20 20 C 1.36936 * 125.64595 * 155.81882 * 19 18 17 21 21 H 1.08002 * 120.00254 * 209.84892 * 20 19 18 22 22 C 1.38815 * 120.00137 * 29.84281 * 20 19 18 23 23 N 1.31616 * 120.00365 * 201.04103 * 22 20 19 24 24 Si 1.86804 * 119.99742 * 21.04358 * 22 20 19 25 25 H 1.48502 * 109.46980 * 274.45387 * 24 22 20 26 26 H 1.48502 * 109.47097 * 34.45014 * 24 22 20 27 27 H 1.48493 * 109.47061 * 154.45363 * 24 22 20 28 28 C 1.47019 * 108.70520 * 335.55879 * 19 18 17 29 29 H 1.08994 * 109.46697 * 299.99888 * 1 2 3 30 30 H 1.08996 * 109.46825 * 59.99918 * 1 2 3 31 31 H 1.09004 * 109.46860 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46875 * 240.00012 * 2 1 3 33 33 H 1.08996 * 109.47175 * 120.00498 * 2 1 3 34 34 H 1.08999 * 109.47115 * 59.99640 * 3 2 1 35 35 H 1.09005 * 109.47145 * 300.00457 * 3 2 1 36 36 H 1.08004 * 120.06068 * 0.02562 * 7 6 4 37 37 H 0.96703 * 113.99306 * 90.00337 * 9 8 7 38 38 H 0.96707 * 114.00152 * 89.99939 * 11 10 8 39 39 H 1.07999 * 119.94363 * 180.25949 * 12 10 8 40 40 H 1.09004 * 111.00202 * 324.20784 * 17 15 14 41 41 H 1.09003 * 111.00840 * 88.01979 * 17 15 14 42 42 H 1.08996 * 110.49500 * 278.45409 * 18 17 15 43 43 H 1.08995 * 110.34043 * 156.05841 * 18 17 15 44 44 H 0.97003 * 119.99893 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88036 * 120.70576 * 28 19 18 46 46 H 1.09004 * 109.87466 * 241.71070 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1538 0.3916 -0.0015 6 6 4.2794 2.7109 -0.0002 7 6 3.5812 3.9276 0.0014 8 6 4.2756 5.1173 0.0023 9 8 3.5990 6.2978 0.0033 10 6 5.6724 5.1151 0.0023 11 8 6.3499 6.2914 0.0037 12 6 6.3700 3.9174 0.0062 13 6 5.6849 2.7146 -0.0005 14 8 6.3681 1.5424 -0.0019 15 6 7.7903 1.6208 -0.1167 16 1 8.0769 2.4134 -0.8080 17 6 8.3809 0.2573 -0.5634 18 6 9.8176 0.3381 0.0164 19 7 9.6610 1.0263 1.3107 20 6 10.5158 0.9271 2.3758 21 1 10.1393 1.0348 3.3824 22 6 11.8664 0.6878 2.1620 23 7 12.6074 0.1882 3.1282 24 14 12.6322 1.0751 0.5028 25 1 12.4405 -0.0787 -0.4123 26 1 11.9806 2.2782 -0.0745 27 1 14.0842 1.3336 0.6760 28 6 8.4384 1.8416 1.2663 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.5012 3.9316 0.0027 37 1 3.4036 6.6383 0.8871 38 1 6.5463 6.6312 0.8876 39 1 7.4500 3.9225 0.0103 40 1 7.8251 -0.5716 -0.1252 41 1 8.4034 0.1785 -1.6504 42 1 10.4640 0.9155 -0.6445 43 1 10.2228 -0.6627 0.1654 44 1 13.5510 0.0207 2.9786 45 1 7.7527 1.5246 2.0520 46 1 8.6901 2.8942 1.3965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233497564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:17 Heat of formation + Delta-G solvation = -135.300049 kcal Electronic energy + Delta-G solvation = -29325.654990 eV Core-core repulsion = 25181.041454 eV Total energy + Delta-G solvation = -4144.613536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99748 -40.40177 -40.18567 -38.45692 -37.97242 -36.50941 -35.26253 -34.50339 -32.04402 -31.77363 -30.04910 -29.69405 -28.62202 -26.35724 -25.00446 -23.96131 -22.85180 -22.39878 -21.88976 -20.80142 -20.09632 -19.17196 -19.05327 -18.28914 -17.74761 -17.38553 -17.11490 -16.68670 -16.47825 -16.14907 -15.86386 -15.79749 -15.57231 -15.21018 -15.10799 -14.72658 -14.49400 -14.33458 -14.09398 -13.98562 -13.72314 -13.31656 -13.19120 -12.95352 -12.81836 -12.73798 -12.68459 -12.65380 -12.43030 -12.20487 -11.96586 -11.84004 -11.69439 -11.59772 -11.57293 -11.36445 -10.81912 -10.53304 -10.06602 -9.20962 -9.03967 -8.28215 -5.65271 -0.52568 0.13023 1.28548 1.33964 1.35502 1.46067 1.92126 2.35753 2.46164 2.87657 2.94027 3.05994 3.17754 3.24472 3.46080 3.63263 3.65130 3.82814 3.97031 4.01033 4.16979 4.17858 4.22604 4.26824 4.43342 4.58527 4.64976 4.68150 4.70744 4.76863 4.79802 4.81310 4.83392 4.83993 4.89768 5.05617 5.07751 5.13958 5.30033 5.31521 5.39836 5.49395 5.66462 6.02594 6.21212 6.55389 6.65426 6.70053 6.92034 7.40752 8.00479 8.91778 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003383 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.212436 B = 8274.152596 C =10029.468504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.389 3.611 5 O -0.480 6.480 6 C -0.218 4.218 7 C -0.027 4.027 8 C 0.032 3.968 9 O -0.489 6.489 10 C 0.158 3.842 11 O -0.497 6.497 12 C -0.250 4.250 13 C 0.175 3.825 14 O -0.283 6.283 15 C 0.075 3.925 16 H 0.101 0.899 17 C -0.109 4.109 18 C 0.111 3.889 19 N -0.621 5.621 20 C -0.250 4.250 21 H 0.048 0.952 22 C -0.021 4.021 23 N -0.949 5.949 24 Si 0.946 3.054 25 H -0.264 1.264 26 H -0.265 1.265 27 H -0.301 1.301 28 C 0.116 3.884 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.187 0.813 37 H 0.408 0.592 38 H 0.416 0.584 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.034 0.966 43 H 0.051 0.949 44 H 0.267 0.733 45 H 0.027 0.973 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.120 11.125 -8.967 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.193 4.193 4 C 0.268 3.732 5 O -0.357 6.357 6 C -0.220 4.220 7 C -0.045 4.045 8 C -0.014 4.014 9 O -0.301 6.301 10 C 0.112 3.888 11 O -0.311 6.311 12 C -0.269 4.269 13 C 0.127 3.873 14 O -0.194 6.194 15 C 0.018 3.982 16 H 0.118 0.882 17 C -0.147 4.147 18 C -0.013 4.013 19 N -0.349 5.349 20 C -0.378 4.378 21 H 0.066 0.934 22 C -0.218 4.218 23 N -0.593 5.593 24 Si 0.773 3.227 25 H -0.190 1.190 26 H -0.190 1.190 27 H -0.228 1.228 28 C -0.009 4.009 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.204 0.796 37 H 0.266 0.734 38 H 0.278 0.722 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.677 10.217 -10.014 29.393 hybrid contribution 1.571 0.309 0.941 1.857 sum -24.105 10.525 -9.073 27.824 Atomic orbital electron populations 1.21748 0.93497 1.02219 1.02920 1.21333 0.97113 0.95523 1.01699 1.22127 0.90371 0.99845 1.06945 1.22721 0.92950 0.86595 0.70902 1.90624 1.72794 1.35077 1.37167 1.20085 0.89874 0.96856 1.15140 1.21675 1.02121 0.88029 0.92721 1.18415 0.88394 0.86889 1.07667 1.84943 1.75397 1.34504 1.35258 1.18888 0.89859 0.85110 0.94959 1.84730 1.76156 1.34733 1.35530 1.21574 1.01648 0.91450 1.12233 1.19462 0.91671 0.85003 0.91142 1.86362 1.19765 1.27632 1.85664 1.23538 0.77466 1.00447 0.96729 0.88181 1.22798 0.94115 0.95567 1.02215 1.22104 0.95832 0.96529 0.86845 1.44646 1.26096 1.51215 1.12987 1.18418 0.88137 1.45513 0.85734 0.93427 1.25929 0.96157 0.98737 1.00961 1.69953 1.07738 1.45854 1.35784 0.85837 0.76368 0.79801 0.80686 1.18975 1.18995 1.22832 1.21920 0.88638 0.94747 0.95598 0.91467 0.91401 0.92782 0.93122 0.93341 0.85644 0.85698 0.79553 0.73412 0.72242 0.84295 0.90352 0.87170 0.94843 0.93055 0.92388 0.95442 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.93 5.22 30.59 0.16 -1.77 16 3 C -0.16 -2.04 4.30 29.84 0.13 -1.91 16 4 C 0.39 9.15 7.09 27.83 0.20 9.35 16 5 O -0.48 -16.03 14.77 17.81 0.26 -15.76 16 6 C -0.22 -4.95 5.88 -20.07 -0.12 -5.07 16 7 C -0.03 -0.41 9.38 22.65 0.21 -0.20 16 8 C 0.03 0.54 6.70 22.50 0.15 0.69 16 9 O -0.49 -6.34 13.28 -80.28 -1.07 -7.41 16 10 C 0.16 3.34 6.72 22.71 0.15 3.49 16 11 O -0.50 -9.40 13.26 -76.65 -1.02 -10.41 16 12 C -0.25 -6.44 8.69 22.40 0.19 -6.24 16 13 C 0.18 5.00 6.64 22.88 0.15 5.15 16 14 O -0.28 -9.72 7.93 -68.84 -0.55 -10.26 16 15 C 0.07 2.57 2.77 31.78 0.09 2.66 16 16 H 0.10 3.04 6.59 -2.38 -0.02 3.03 16 17 C -0.11 -3.77 6.82 32.06 0.22 -3.55 16 18 C 0.11 4.76 4.87 86.93 0.42 5.19 16 19 N -0.62 -30.98 3.03 -691.56 -2.10 -33.08 16 20 C -0.25 -14.80 10.51 84.03 0.88 -13.91 16 21 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 22 C -0.02 -1.27 5.43 84.86 0.46 -0.81 16 23 N -0.95 -60.13 13.97 21.65 0.30 -59.82 16 24 Si 0.95 46.40 24.55 68.60 1.68 48.08 16 25 H -0.26 -12.12 6.98 99.48 0.69 -11.42 16 26 H -0.27 -12.45 6.98 99.48 0.69 -11.76 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 28 C 0.12 4.83 6.50 86.73 0.56 5.39 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 34 H 0.13 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.13 0.97 8.08 -2.38 -0.02 0.95 16 36 H 0.19 1.23 7.04 -2.91 -0.02 1.21 16 37 H 0.41 1.08 9.07 -74.06 -0.67 0.40 16 38 H 0.42 3.73 9.06 -74.05 -0.67 3.06 16 39 H 0.14 3.79 5.29 -2.91 -0.02 3.78 16 40 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 41 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.03 1.41 5.50 -2.39 -0.01 1.39 16 43 H 0.05 2.32 7.85 -2.39 -0.02 2.30 16 44 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 45 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 46 H 0.04 1.66 7.42 -2.38 -0.02 1.64 16 Total: -1.00 -82.50 374.62 1.77 -80.73 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.34 Total: 10.32 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.58 Total: -2.38 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -1.80 Total: -92.91 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.36 Total: -43.85 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.68 Total: 48.08 kcal Total: -82.50 1.77 -80.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233497564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.571 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds