Wall clock time and date at job start Tue Mar 31 2020 19:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 H 1.09005 * 109.47007 * 178.12785 * 3 2 1 5 5 C 1.50702 * 109.47507 * 58.13191 * 3 2 1 6 6 H 1.07999 * 119.99460 * 239.99634 * 5 3 2 7 7 C 1.37875 * 119.99860 * 59.99713 * 5 3 2 8 8 N 1.31515 * 120.00303 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99809 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47090 * 59.99912 * 9 7 5 11 11 H 1.48494 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47099 * 300.00362 * 9 7 5 13 13 N 1.46904 * 109.47153 * 298.12620 * 3 2 1 14 14 C 1.49568 * 111.00101 * 300.41043 * 13 3 2 15 15 C 1.56253 * 106.46270 * 230.28001 * 14 13 3 16 16 C 1.51450 * 100.76689 * 336.88178 * 15 14 13 17 17 H 1.09002 * 109.41387 * 288.68299 * 16 15 14 18 18 C 1.43984 * 111.00008 * 182.87655 * 13 3 2 19 19 H 1.08998 * 110.01089 * 41.35630 * 18 13 3 20 20 C 1.51544 * 125.10350 * 266.83869 * 18 13 3 21 21 C 1.56243 * 100.70442 * 205.70509 * 20 18 13 22 22 N 1.43460 * 125.46528 * 154.89425 * 16 15 14 23 23 C 1.34777 * 126.99662 * 33.12558 * 22 16 15 24 24 O 1.21634 * 119.99799 * 359.97438 * 23 22 16 25 25 C 1.47264 * 119.99959 * 179.97438 * 23 22 16 26 26 C 1.35211 * 123.14000 * 180.02562 * 25 23 22 27 27 S 1.70941 * 108.82679 * 179.97438 * 26 25 23 28 28 C 1.70773 * 91.12877 * 359.97438 * 27 26 25 29 29 N 1.28654 * 110.55955 * 359.76526 * 28 27 26 30 30 H 1.09006 * 109.46483 * 64.13992 * 1 2 3 31 31 H 1.09001 * 109.47148 * 184.14075 * 1 2 3 32 32 H 1.08997 * 109.47110 * 304.14726 * 1 2 3 33 33 H 1.08996 * 109.47524 * 239.99078 * 2 1 3 34 34 H 1.09003 * 109.46554 * 119.99399 * 2 1 3 35 35 H 0.96997 * 120.00273 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.05301 * 349.52993 * 14 13 3 37 37 H 1.08999 * 110.05757 * 111.02544 * 14 13 3 38 38 H 1.09001 * 111.15757 * 219.00139 * 15 14 13 39 39 H 1.09006 * 111.19944 * 94.77633 * 15 14 13 40 40 H 1.08996 * 111.17185 * 323.56951 * 20 18 13 41 41 H 1.09006 * 111.16601 * 87.84537 * 20 18 13 42 42 H 1.09001 * 110.05064 * 142.31797 * 21 20 18 43 43 H 1.08999 * 110.05612 * 263.74730 * 21 20 18 44 44 H 1.08002 * 125.58694 * 359.92609 * 26 25 23 45 45 H 1.08000 * 124.72226 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0336 5 6 1.5003 2.1662 1.2066 6 1 0.8829 3.0431 1.0788 7 6 1.7946 1.7088 2.4736 8 7 2.5468 0.6413 2.6291 9 14 1.1249 2.6055 3.9692 10 1 -0.3593 2.6048 3.9233 11 1 1.5829 1.9193 5.2039 12 1 1.6194 4.0058 3.9693 13 7 1.5877 2.1218 -1.2215 14 6 2.0970 1.4244 -2.4426 15 6 2.7516 2.5236 -3.3397 16 6 2.0406 3.7617 -2.8342 17 1 1.0027 3.7446 -3.1668 18 6 2.1057 3.4636 -1.2876 19 1 3.1458 3.4783 -0.9623 20 6 1.3879 4.7005 -0.7863 21 6 2.0378 5.7986 -1.6879 22 7 2.5507 5.1008 -2.9024 23 6 3.3341 5.6221 -3.8674 24 8 3.6802 4.9330 -4.8081 25 6 3.7709 7.0259 -3.7828 26 6 4.5557 7.6132 -4.7141 27 16 4.8353 9.2361 -4.2559 28 6 3.8885 9.0374 -2.8486 29 7 3.4237 7.8396 -2.7823 30 1 -0.3632 0.4483 -0.9248 31 1 -0.3633 -1.0250 0.0742 32 1 -0.3633 0.5768 0.8505 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.7536 0.3193 3.5204 36 1 2.8406 0.6777 -2.1638 37 1 1.2718 0.9505 -2.9741 38 1 2.5374 2.3498 -4.3942 39 1 3.8255 2.5875 -3.1644 40 1 0.3145 4.6312 -0.9622 41 1 1.6013 4.8794 0.2676 42 1 1.2908 6.5403 -1.9706 43 1 2.8595 6.2797 -1.1574 44 1 4.9431 7.1351 -5.6017 45 1 3.7020 9.8109 -2.1183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:15 Heat of formation + Delta-G solvation = 49.347533 kcal Electronic energy + Delta-G solvation = -27696.423783 eV Core-core repulsion = 24034.862789 eV Total energy + Delta-G solvation = -3661.560993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91199 -39.80403 -38.02182 -36.03460 -33.74953 -31.34480 -31.30370 -30.82624 -29.07191 -27.02552 -25.88482 -25.81372 -23.76253 -23.00239 -21.73266 -21.12356 -20.02264 -19.48693 -18.95907 -17.64292 -16.88698 -16.20217 -15.93491 -15.74043 -15.31129 -14.80157 -14.68476 -14.38195 -14.04620 -13.63512 -13.54836 -13.44823 -13.10053 -12.63396 -12.41677 -12.34108 -12.20089 -11.88163 -11.79565 -11.61886 -11.11139 -10.87948 -10.73519 -10.67594 -10.51406 -10.26901 -10.15204 -10.04520 -10.00017 -9.86629 -9.79327 -9.55328 -9.32784 -9.30225 -8.80227 -8.41331 -8.35232 -7.26818 -5.99421 -4.02443 0.28027 0.97866 1.32658 1.84454 3.05774 3.31276 3.32664 3.36701 3.38640 3.85180 4.36351 4.45930 4.72025 4.89195 5.02533 5.07216 5.18043 5.32967 5.36704 5.47258 5.56904 5.59865 5.72496 5.85369 5.95477 6.14080 6.24855 6.35854 6.43176 6.47174 6.49113 6.59498 6.65157 6.68800 6.76781 6.82624 7.14163 7.17655 7.24218 7.42503 7.62604 7.64356 7.73852 7.85150 8.17203 8.21835 8.34833 8.53815 9.02500 9.61053 11.07434 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003379 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.468534 B = 8284.582582 C = 9557.018257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.212 3.788 4 H -0.002 1.002 5 C -0.496 4.496 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.502 5.502 14 C 0.043 3.957 15 C -0.120 4.120 16 C 0.101 3.899 17 H 0.081 0.919 18 C 0.087 3.913 19 H 0.043 0.957 20 C -0.110 4.110 21 C 0.120 3.880 22 N -0.583 5.583 23 C 0.603 3.397 24 O -0.538 6.538 25 C 0.015 3.985 26 C -0.224 4.224 27 S 0.200 5.800 28 C -0.002 4.002 29 N -0.434 5.434 30 H 0.039 0.961 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.090 0.910 35 H 0.260 0.740 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.189 0.811 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 16.017 -11.942 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.016 0.984 5 C -0.534 4.534 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.227 5.227 14 C -0.085 4.085 15 C -0.159 4.159 16 C -0.004 4.004 17 H 0.099 0.901 18 C -0.024 4.024 19 H 0.061 0.939 20 C -0.148 4.148 21 C -0.002 4.002 22 N -0.313 5.313 23 C 0.388 3.612 24 O -0.416 6.416 25 C -0.120 4.120 26 C -0.366 4.366 27 S 0.454 5.546 28 C -0.302 4.302 29 N -0.148 5.148 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.206 0.794 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.694 16.224 -12.254 20.510 hybrid contribution 0.333 -0.437 0.962 1.108 sum 3.027 15.787 -11.292 19.645 Atomic orbital electron populations 1.21462 0.97189 0.97545 1.01499 1.21549 0.95377 0.97991 0.99934 1.19488 0.93046 0.91240 0.85635 0.98417 1.21027 1.30987 1.11965 0.89447 0.91700 1.24884 0.95277 0.95094 0.98781 1.69869 1.37628 1.23245 1.22477 0.86672 0.79444 0.79742 0.82236 1.20206 1.21496 1.20398 1.63276 1.56533 1.00046 1.02824 1.23578 0.97931 0.95730 0.91224 1.22272 0.99789 0.93921 0.99880 1.21899 0.97453 0.82118 0.98902 0.90118 1.22181 0.97203 0.91167 0.91858 0.93907 1.22250 1.00212 0.92751 0.99622 1.23007 0.98661 0.94794 0.83748 1.47539 1.48283 1.12648 1.22854 1.16690 0.78333 0.84256 0.81874 1.90808 1.57223 1.60505 1.33065 1.20515 1.02163 0.96611 0.92703 1.26610 1.04497 0.99507 1.05980 1.82898 1.46383 1.07267 1.18057 1.28559 1.01044 0.98110 1.02454 1.67150 1.21490 1.02346 1.23842 0.94170 0.96677 0.92095 0.96789 0.89184 0.93005 0.92710 0.90959 0.90913 0.91607 0.90250 0.89232 0.91107 0.90037 0.79392 0.77810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.53 37.16 0.35 -2.26 16 2 C -0.11 -2.59 5.24 -26.73 -0.14 -2.73 16 3 C 0.21 5.12 1.39 -68.86 -0.10 5.03 16 4 H 0.00 -0.05 7.99 -51.93 -0.41 -0.46 16 5 C -0.50 -12.74 6.67 -34.44 -0.23 -12.97 16 6 H 0.06 1.64 6.01 -52.49 -0.32 1.33 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.81 11.34 55.43 0.63 -24.18 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.50 -10.41 4.43 -215.73 -0.96 -11.36 16 14 C 0.04 0.79 5.99 -0.59 0.00 0.79 16 15 C -0.12 -2.07 5.99 -25.77 -0.15 -2.23 16 16 C 0.10 1.76 3.11 -67.79 -0.21 1.55 16 17 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 18 C 0.09 1.67 1.91 -67.47 -0.13 1.54 16 19 H 0.04 0.93 7.83 -51.93 -0.41 0.53 16 20 C -0.11 -1.85 5.77 -25.73 -0.15 -2.00 16 21 C 0.12 1.77 5.67 -0.82 0.00 1.77 16 22 N -0.58 -9.61 3.22 -163.39 -0.53 -10.13 16 23 C 0.60 10.03 7.84 -12.59 -0.10 9.93 16 24 O -0.54 -10.10 16.38 5.25 0.09 -10.01 16 25 C 0.02 0.20 6.63 -84.53 -0.56 -0.36 16 26 C -0.22 -2.36 10.62 29.65 0.31 -2.04 16 27 S 0.20 1.35 22.97 -107.50 -2.47 -1.12 16 28 C 0.00 -0.02 12.17 51.43 0.63 0.61 16 29 N -0.43 -5.19 7.85 -12.36 -0.10 -5.28 16 30 H 0.04 0.83 7.78 -51.93 -0.40 0.43 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 1.45 7.01 -51.93 -0.36 1.08 16 33 H 0.01 0.30 6.58 -51.93 -0.34 -0.04 16 34 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.05 1.04 6.73 -51.93 -0.35 0.69 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.58 7.56 -51.93 -0.39 1.19 16 42 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 43 H 0.08 1.20 7.16 -51.93 -0.37 0.83 16 44 H 0.19 1.82 8.03 -52.49 -0.42 1.40 16 45 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.27 363.01 -10.07 -40.35 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.61 Total: 2.43 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.58 Total: -1.85 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.95 Total: -50.96 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.27 -10.07 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.695 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds