Wall clock time and date at job start Tue Mar 31 2020 19:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 H 1.09005 * 109.47007 * 178.12785 * 3 2 1 5 5 C 1.50702 * 109.47507 * 58.13191 * 3 2 1 6 6 H 1.07999 * 119.99460 * 239.99634 * 5 3 2 7 7 C 1.37875 * 119.99860 * 59.99713 * 5 3 2 8 8 N 1.31515 * 120.00303 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99809 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47090 * 59.99912 * 9 7 5 11 11 H 1.48494 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47099 * 300.00362 * 9 7 5 13 13 N 1.46904 * 109.47153 * 298.12620 * 3 2 1 14 14 C 1.49568 * 111.00101 * 300.41043 * 13 3 2 15 15 C 1.56253 * 106.46270 * 230.28001 * 14 13 3 16 16 C 1.51450 * 100.76689 * 336.88178 * 15 14 13 17 17 H 1.09002 * 109.41387 * 288.68299 * 16 15 14 18 18 C 1.43984 * 111.00008 * 182.87655 * 13 3 2 19 19 H 1.08998 * 110.01089 * 41.35630 * 18 13 3 20 20 C 1.51544 * 125.10350 * 266.83869 * 18 13 3 21 21 C 1.56243 * 100.70442 * 205.70509 * 20 18 13 22 22 N 1.43460 * 125.46528 * 154.89425 * 16 15 14 23 23 C 1.34777 * 126.99662 * 33.12558 * 22 16 15 24 24 O 1.21634 * 119.99799 * 359.97438 * 23 22 16 25 25 C 1.47264 * 119.99959 * 179.97438 * 23 22 16 26 26 C 1.35211 * 123.14000 * 180.02562 * 25 23 22 27 27 S 1.70941 * 108.82679 * 179.97438 * 26 25 23 28 28 C 1.70773 * 91.12877 * 359.97438 * 27 26 25 29 29 N 1.28654 * 110.55955 * 359.76526 * 28 27 26 30 30 H 1.09006 * 109.46483 * 64.13992 * 1 2 3 31 31 H 1.09001 * 109.47148 * 184.14075 * 1 2 3 32 32 H 1.08997 * 109.47110 * 304.14726 * 1 2 3 33 33 H 1.08996 * 109.47524 * 239.99078 * 2 1 3 34 34 H 1.09003 * 109.46554 * 119.99399 * 2 1 3 35 35 H 0.96997 * 120.00273 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.05301 * 349.52993 * 14 13 3 37 37 H 1.08999 * 110.05757 * 111.02544 * 14 13 3 38 38 H 1.09001 * 111.15757 * 219.00139 * 15 14 13 39 39 H 1.09006 * 111.19944 * 94.77633 * 15 14 13 40 40 H 1.08996 * 111.17185 * 323.56951 * 20 18 13 41 41 H 1.09006 * 111.16601 * 87.84537 * 20 18 13 42 42 H 1.09001 * 110.05064 * 142.31797 * 21 20 18 43 43 H 1.08999 * 110.05612 * 263.74730 * 21 20 18 44 44 H 1.08002 * 125.58694 * 359.92609 * 26 25 23 45 45 H 1.08000 * 124.72226 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0336 5 6 1.5003 2.1662 1.2066 6 1 0.8829 3.0431 1.0788 7 6 1.7946 1.7088 2.4736 8 7 2.5468 0.6413 2.6291 9 14 1.1249 2.6055 3.9692 10 1 -0.3593 2.6048 3.9233 11 1 1.5829 1.9193 5.2039 12 1 1.6194 4.0058 3.9693 13 7 1.5877 2.1218 -1.2215 14 6 2.0970 1.4244 -2.4426 15 6 2.7516 2.5236 -3.3397 16 6 2.0406 3.7617 -2.8342 17 1 1.0027 3.7446 -3.1668 18 6 2.1057 3.4636 -1.2876 19 1 3.1458 3.4783 -0.9623 20 6 1.3879 4.7005 -0.7863 21 6 2.0378 5.7986 -1.6879 22 7 2.5507 5.1008 -2.9024 23 6 3.3341 5.6221 -3.8674 24 8 3.6802 4.9330 -4.8081 25 6 3.7709 7.0259 -3.7828 26 6 4.5557 7.6132 -4.7141 27 16 4.8353 9.2361 -4.2559 28 6 3.8885 9.0374 -2.8486 29 7 3.4237 7.8396 -2.7823 30 1 -0.3632 0.4483 -0.9248 31 1 -0.3633 -1.0250 0.0742 32 1 -0.3633 0.5768 0.8505 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.7536 0.3193 3.5204 36 1 2.8406 0.6777 -2.1638 37 1 1.2718 0.9505 -2.9741 38 1 2.5374 2.3498 -4.3942 39 1 3.8255 2.5875 -3.1644 40 1 0.3145 4.6312 -0.9622 41 1 1.6013 4.8794 0.2676 42 1 1.2908 6.5403 -1.9706 43 1 2.8595 6.2797 -1.1574 44 1 4.9431 7.1351 -5.6017 45 1 3.7020 9.8109 -2.1183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:14 Heat of formation + Delta-G solvation = 29.937575 kcal Electronic energy + Delta-G solvation = -27697.265462 eV Core-core repulsion = 24034.862789 eV Total energy + Delta-G solvation = -3662.402672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16381 -40.89626 -39.27678 -37.60477 -35.48000 -33.23915 -32.72770 -31.70474 -30.61193 -28.44920 -27.69963 -26.84666 -25.19379 -24.52125 -23.10251 -22.43788 -21.53701 -20.72427 -20.18131 -18.89273 -18.49069 -17.56145 -17.11678 -17.05392 -16.71984 -16.29497 -15.99199 -15.75838 -15.48642 -15.11700 -14.80079 -14.64800 -14.30922 -14.09473 -14.01590 -13.92473 -13.67468 -13.44428 -13.09198 -12.92322 -12.78473 -12.65999 -12.39270 -12.28240 -12.14037 -11.98223 -11.70664 -11.58976 -11.40606 -11.32148 -11.00385 -10.76420 -10.71507 -10.68167 -10.43084 -10.03622 -9.65241 -9.03148 -8.03556 -6.12363 -0.47283 0.33761 0.64431 0.93830 1.45715 1.47052 1.53554 1.84115 2.24523 2.46529 2.87759 3.19482 3.25416 3.46242 3.65568 3.90940 3.93192 4.03715 4.14979 4.22496 4.30417 4.36039 4.42613 4.53158 4.63123 4.73231 4.75844 4.77249 4.86716 4.90099 4.91762 5.02735 5.10694 5.20723 5.24249 5.32176 5.36670 5.42078 5.52979 5.74972 5.80014 5.88569 6.30520 6.34230 6.44261 6.48836 6.62186 6.98768 7.00753 7.54740 9.02646 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003379 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.468534 B = 8284.582582 C = 9557.018257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C 0.220 3.780 4 H -0.048 1.048 5 C -0.498 4.498 6 H 0.068 0.932 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.271 1.271 13 N -0.501 5.501 14 C 0.044 3.956 15 C -0.110 4.110 16 C 0.111 3.889 17 H 0.087 0.913 18 C 0.080 3.920 19 H 0.008 0.992 20 C -0.105 4.105 21 C 0.135 3.865 22 N -0.589 5.589 23 C 0.596 3.404 24 O -0.571 6.571 25 C -0.018 4.018 26 C -0.238 4.238 27 S 0.299 5.701 28 C -0.006 4.006 29 N -0.467 5.467 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.189 0.811 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 18.975 -12.769 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C 0.114 3.886 4 H -0.031 1.031 5 C -0.536 4.536 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.196 1.196 13 N -0.225 5.225 14 C -0.083 4.083 15 C -0.149 4.149 16 C 0.005 3.995 17 H 0.105 0.895 18 C -0.031 4.031 19 H 0.026 0.974 20 C -0.144 4.144 21 C 0.014 3.986 22 N -0.320 5.320 23 C 0.384 3.616 24 O -0.451 6.451 25 C -0.153 4.153 26 C -0.381 4.381 27 S 0.555 5.445 28 C -0.305 4.305 29 N -0.181 5.181 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.207 0.793 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.841 19.224 -13.087 23.329 hybrid contribution 0.721 -1.244 1.127 1.827 sum 2.563 17.980 -11.960 21.746 Atomic orbital electron populations 1.21313 0.95455 0.98510 1.01101 1.21431 0.96760 0.97228 0.99085 1.19248 0.90180 0.92147 0.87073 1.03109 1.21270 1.30401 1.11869 0.90082 0.91402 1.25610 0.95629 0.95779 1.01461 1.70025 1.38980 1.24685 1.22717 0.85740 0.79059 0.78833 0.78840 1.19436 1.21779 1.19570 1.63269 1.56156 1.00742 1.02318 1.23639 0.98408 0.95703 0.90578 1.22165 0.98589 0.93770 1.00388 1.21773 0.97843 0.82902 0.96932 0.89495 1.22216 0.95601 0.91299 0.93966 0.97436 1.22224 1.00623 0.92079 0.99443 1.22918 0.98937 0.93983 0.82755 1.47651 1.48642 1.12198 1.23495 1.17247 0.77512 0.85709 0.81138 1.90765 1.58330 1.61834 1.34221 1.20163 1.04744 0.95521 0.94865 1.26887 1.03523 1.02243 1.05494 1.82589 1.43543 1.02925 1.15424 1.29190 1.00020 0.97560 1.03681 1.67094 1.23275 1.03680 1.24099 0.92894 0.94752 0.94232 0.95456 0.92209 0.93333 0.93921 0.88833 0.89452 0.93382 0.89291 0.90339 0.89045 0.89975 0.79346 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.53 71.98 0.69 -3.90 16 2 C -0.11 -5.12 5.24 30.59 0.16 -4.96 16 3 C 0.22 11.06 1.39 44.17 0.06 11.12 16 4 H -0.05 -2.83 7.99 -2.38 -0.02 -2.85 16 5 C -0.50 -26.15 6.67 25.60 0.17 -25.98 16 6 H 0.07 3.46 6.01 -2.91 -0.02 3.45 16 7 C 0.01 0.72 5.30 84.65 0.45 1.17 16 8 N -0.92 -53.02 11.34 21.45 0.24 -52.77 16 9 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.50 -21.12 4.43 -836.43 -3.71 -24.83 16 14 C 0.04 1.64 5.99 86.91 0.52 2.16 16 15 C -0.11 -3.88 5.99 31.22 0.19 -3.69 16 16 C 0.11 3.88 3.11 46.69 0.15 4.03 16 17 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 18 C 0.08 3.17 1.91 46.62 0.09 3.26 16 19 H 0.01 0.35 7.83 -2.39 -0.02 0.34 16 20 C -0.11 -3.53 5.77 31.24 0.18 -3.35 16 21 C 0.14 3.93 5.67 86.99 0.49 4.42 16 22 N -0.59 -19.49 3.22 -789.09 -2.54 -22.03 16 23 C 0.60 19.98 7.84 86.62 0.68 20.66 16 24 O -0.57 -21.85 16.38 -4.14 -0.07 -21.92 16 25 C -0.02 -0.47 6.63 40.56 0.27 -0.20 16 26 C -0.24 -4.66 10.62 67.12 0.71 -3.94 16 27 S 0.30 2.98 22.97 -56.49 -1.30 1.69 16 28 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 29 N -0.47 -10.32 7.85 -193.02 -1.52 -11.83 16 30 H 0.05 2.12 7.78 -2.38 -0.02 2.10 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.85 7.01 -2.39 -0.02 1.84 16 33 H 0.03 1.20 6.58 -2.39 -0.02 1.18 16 34 H 0.06 3.25 6.12 -2.39 -0.01 3.24 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.04 1.67 6.73 -2.39 -0.02 1.66 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.08 2.79 7.56 -2.38 -0.02 2.77 16 42 H 0.09 2.29 8.09 -2.39 -0.02 2.28 16 43 H 0.08 2.39 7.16 -2.39 -0.02 2.37 16 44 H 0.19 3.50 8.03 -2.91 -0.02 3.48 16 45 H 0.24 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -68.68 363.01 0.53 -68.14 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.00 Total: 16.41 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.40 Total: 2.31 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -7.52 Total: -111.46 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.07 Total: -21.92 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.30 Total: 1.69 kcal Total: -68.68 0.53 -68.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.080 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds