Wall clock time and date at job start Tue Mar 31 2020 19:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47690 * 2 1 4 4 H 1.09003 * 109.46792 * 54.70433 * 3 2 1 5 5 C 1.50694 * 109.47462 * 174.70897 * 3 2 1 6 6 H 1.08002 * 120.00439 * 95.27145 * 5 3 2 7 7 C 1.37882 * 119.99816 * 275.27493 * 5 3 2 8 8 N 1.31509 * 119.99844 * 355.09548 * 7 5 3 9 9 Si 1.86797 * 119.99668 * 175.09903 * 7 5 3 10 10 H 1.48495 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46939 * 239.99641 * 9 7 5 12 12 H 1.48501 * 109.47416 * 120.00160 * 9 7 5 13 13 N 1.46905 * 109.46997 * 294.71148 * 3 2 1 14 14 C 1.49568 * 110.99909 * 292.52419 * 13 3 2 15 15 C 1.56250 * 106.47221 * 230.28424 * 14 13 3 16 16 C 1.51456 * 100.75828 * 336.88272 * 15 14 13 17 17 H 1.08999 * 109.41811 * 288.67618 * 16 15 14 18 18 C 1.43989 * 111.00155 * 174.99793 * 13 3 2 19 19 H 1.09002 * 110.00413 * 41.34708 * 18 13 3 20 20 C 1.51544 * 125.10445 * 266.83605 * 18 13 3 21 21 C 1.56242 * 100.70329 * 205.70023 * 20 18 13 22 22 N 1.43469 * 125.45962 * 154.89075 * 16 15 14 23 23 C 1.34777 * 126.99693 * 33.12994 * 22 16 15 24 24 O 1.21636 * 120.00049 * 359.97438 * 23 22 16 25 25 C 1.47263 * 119.99924 * 179.97438 * 23 22 16 26 26 C 1.35214 * 123.14033 * 179.97438 * 25 23 22 27 27 S 1.70941 * 108.82745 * 179.97438 * 26 25 23 28 28 C 1.70778 * 91.12843 * 359.97438 * 27 26 25 29 29 N 1.28651 * 110.55911 * 359.76756 * 28 27 26 30 30 H 1.09004 * 109.47036 * 300.00716 * 1 2 3 31 31 H 1.09008 * 109.46938 * 59.99814 * 1 2 3 32 32 H 1.08997 * 109.47660 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47036 * 239.99284 * 2 1 3 34 34 H 1.09001 * 109.46628 * 120.00464 * 2 1 3 35 35 H 0.97001 * 120.00307 * 5.12021 * 8 7 5 36 36 H 1.09007 * 110.05696 * 349.53755 * 14 13 3 37 37 H 1.09002 * 110.05827 * 111.02913 * 14 13 3 38 38 H 1.08997 * 111.15947 * 219.00637 * 15 14 13 39 39 H 1.08999 * 111.19463 * 94.77088 * 15 14 13 40 40 H 1.08997 * 111.16657 * 323.56683 * 20 18 13 41 41 H 1.09004 * 111.16651 * 87.83608 * 20 18 13 42 42 H 1.09004 * 110.05272 * 142.31415 * 21 20 18 43 43 H 1.08997 * 110.05615 * 263.74547 * 21 20 18 44 44 H 1.07998 * 125.58294 * 359.93072 * 26 25 23 45 45 H 1.07996 * 124.71935 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5413 1.4443 0.1310 6 1 4.1605 1.5023 -0.7520 7 6 4.1246 1.3721 1.3783 8 7 3.3739 1.3987 2.4577 9 14 5.9810 1.2364 1.5347 10 1 6.5924 1.2258 0.1815 11 1 6.3274 -0.0217 2.2438 12 1 6.4992 2.3964 2.3035 13 7 1.6575 2.0971 -1.2582 14 6 2.3841 1.4947 -2.4184 15 6 3.0064 2.6844 -3.2176 16 6 2.1016 3.8194 -2.7853 17 1 1.1188 3.6925 -3.2394 18 6 2.0196 3.4906 -1.2457 19 1 3.0057 3.6157 -0.7984 20 6 1.1088 4.6239 -0.8183 21 6 1.7272 5.8122 -1.6225 22 7 2.4566 5.2094 -2.7757 23 6 3.2812 5.8418 -3.6339 24 8 3.8129 5.2217 -4.5351 25 6 3.5384 7.2837 -3.4806 26 6 4.3536 7.9808 -4.3038 27 16 4.3863 9.6126 -3.7958 28 6 3.3099 9.2706 -2.5148 29 7 2.9833 8.0262 -2.5191 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.4073 1.3943 2.3765 36 1 3.1720 0.8308 -2.0623 37 1 1.6877 0.9435 -3.0504 38 1 2.9388 2.5147 -4.2922 39 1 4.0376 2.8661 -2.9147 40 1 0.0788 4.4369 -1.1218 41 1 1.1751 4.7985 0.2556 42 1 0.9370 6.4708 -1.9832 43 1 2.4194 6.3702 -0.9919 44 1 4.8958 7.5732 -5.1442 45 1 2.9505 9.9984 -1.8024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:18 Heat of formation + Delta-G solvation = 42.272060 kcal Electronic energy + Delta-G solvation = -27853.069009 eV Core-core repulsion = 24191.201200 eV Total energy + Delta-G solvation = -3661.867809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88606 -39.79540 -38.02031 -36.18195 -33.63550 -31.70813 -31.28299 -30.83576 -29.24471 -26.86413 -26.11638 -25.35821 -23.61592 -22.98613 -21.75083 -21.21043 -20.04603 -19.49505 -19.21870 -17.84285 -16.74810 -16.62241 -16.03723 -15.81886 -15.41594 -14.70830 -14.47940 -14.24324 -13.84508 -13.79547 -13.59625 -13.46900 -13.15398 -12.66771 -12.64853 -12.38081 -12.26054 -11.99197 -11.72345 -11.65231 -11.00471 -10.82646 -10.77355 -10.68855 -10.45646 -10.21133 -10.19478 -10.13811 -10.08445 -9.97512 -9.84978 -9.64789 -9.53934 -9.27343 -8.93304 -8.38682 -8.32825 -7.17385 -6.37827 -4.13998 0.30914 1.00457 1.35168 1.87457 3.08660 3.36692 3.40278 3.41852 3.55956 3.87378 4.43306 4.47683 4.73214 4.90727 5.05026 5.06904 5.17759 5.32062 5.46879 5.50453 5.57157 5.61972 5.75870 5.94986 6.00559 6.09932 6.13487 6.19648 6.28397 6.36748 6.39600 6.50676 6.55756 6.64760 6.79143 6.80476 6.88353 6.92483 7.08344 7.19991 7.29294 7.37473 7.66697 7.88263 8.04206 8.20973 8.26779 8.52039 8.80071 9.59253 10.96991 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.003638 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.586046 B = 7694.249368 C = 8435.418043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.190 3.810 4 H 0.042 0.958 5 C -0.623 4.623 6 H 0.055 0.945 7 C 0.029 3.971 8 N -0.908 5.908 9 Si 1.063 2.937 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.503 5.503 14 C 0.046 3.954 15 C -0.116 4.116 16 C 0.107 3.893 17 H 0.076 0.924 18 C 0.064 3.936 19 H 0.071 0.929 20 C -0.114 4.114 21 C 0.125 3.875 22 N -0.582 5.582 23 C 0.603 3.397 24 O -0.536 6.536 25 C 0.015 3.985 26 C -0.223 4.223 27 S 0.200 5.800 28 C -0.003 4.003 29 N -0.435 5.435 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.272 0.728 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.189 0.811 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 15.728 -10.447 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C 0.083 3.917 4 H 0.060 0.940 5 C -0.662 4.662 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.544 5.544 9 Si 0.892 3.108 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.227 5.227 14 C -0.082 4.082 15 C -0.155 4.155 16 C 0.002 3.998 17 H 0.094 0.906 18 C -0.047 4.047 19 H 0.089 0.911 20 C -0.153 4.153 21 C 0.003 3.997 22 N -0.313 5.313 23 C 0.389 3.611 24 O -0.414 6.414 25 C -0.120 4.120 26 C -0.365 4.365 27 S 0.454 5.546 28 C -0.302 4.302 29 N -0.149 5.149 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.206 0.794 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.078 15.999 -9.824 18.805 hybrid contribution -0.458 -0.748 -0.923 1.273 sum -1.536 15.251 -10.747 18.721 Atomic orbital electron populations 1.21741 0.98042 0.98945 1.01184 1.21621 0.93138 0.99254 1.00310 1.19603 0.94275 0.90672 0.87186 0.93998 1.22529 0.92195 1.56129 0.95302 0.92712 1.25656 1.06500 0.93248 0.92247 1.70735 1.07282 1.45889 1.30480 0.83623 0.74894 0.77026 0.75214 1.21623 1.21275 1.21441 1.63475 1.53711 1.00483 1.05012 1.23527 0.96966 0.96120 0.91544 1.22223 0.99185 0.94222 0.99879 1.21830 0.98146 0.80715 0.99139 0.90642 1.22434 0.98967 0.90232 0.93113 0.91095 1.22189 0.99359 0.93685 1.00055 1.22886 0.95535 0.95304 0.86024 1.47503 1.44665 1.09787 1.29347 1.16679 0.78797 0.84080 0.81561 1.90813 1.50824 1.66366 1.33367 1.20518 1.00324 0.96407 0.94703 1.26610 1.05091 0.98402 1.06435 1.82883 1.41951 1.06209 1.23542 1.28544 1.01681 0.96587 1.03407 1.67137 1.22757 1.04058 1.20952 0.94096 0.92582 0.95170 0.93755 0.92892 0.91664 0.90465 0.92005 0.91392 0.91293 0.90543 0.90207 0.91123 0.89956 0.79381 0.77826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.80 37.16 0.36 -2.31 16 2 C -0.10 -2.30 5.34 -26.73 -0.14 -2.44 16 3 C 0.19 4.46 1.44 -68.87 -0.10 4.36 16 4 H 0.04 1.10 6.65 -51.93 -0.35 0.75 16 5 C -0.62 -16.33 6.18 -34.44 -0.21 -16.54 16 6 H 0.05 1.48 6.10 -52.49 -0.32 1.16 16 7 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 8 N -0.91 -26.24 13.63 55.43 0.76 -25.48 16 9 Si 1.06 25.09 29.91 -169.99 -5.08 20.01 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.50 -10.38 4.66 -215.73 -1.01 -11.39 16 14 C 0.05 0.90 5.36 -0.59 0.00 0.90 16 15 C -0.12 -2.20 5.99 -25.77 -0.15 -2.35 16 16 C 0.11 1.94 3.11 -67.78 -0.21 1.73 16 17 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.06 1.25 2.42 -67.47 -0.16 1.09 16 19 H 0.07 1.68 6.77 -51.93 -0.35 1.32 16 20 C -0.11 -1.87 6.86 -25.73 -0.18 -2.04 16 21 C 0.12 1.87 5.67 -0.82 0.00 1.86 16 22 N -0.58 -10.01 3.22 -163.38 -0.53 -10.54 16 23 C 0.60 10.54 7.84 -12.59 -0.10 10.44 16 24 O -0.54 -10.59 16.38 5.25 0.09 -10.50 16 25 C 0.02 0.22 6.63 -84.53 -0.56 -0.34 16 26 C -0.22 -2.49 10.62 29.66 0.31 -2.18 16 27 S 0.20 1.45 22.97 -107.50 -2.47 -1.02 16 28 C 0.00 -0.02 12.17 51.43 0.63 0.60 16 29 N -0.43 -5.39 7.85 -12.36 -0.10 -5.49 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.03 7.76 -51.92 -0.40 0.63 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.95 7.03 -51.93 -0.37 0.59 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.27 7.81 6.66 -40.82 -0.27 7.54 16 36 H 0.08 1.67 5.40 -51.93 -0.28 1.39 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.08 1.25 7.16 -51.93 -0.37 0.88 16 44 H 0.19 1.95 8.03 -52.49 -0.42 1.53 16 45 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -31.09 365.83 -10.02 -41.11 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.57 Total: 4.30 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.62 Total: -6.51 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.87 Total: -52.89 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.47 Total: -1.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -10.02 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.384 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds