Wall clock time and date at job start Tue Mar 31 2020 19:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47690 * 2 1 4 4 H 1.09003 * 109.46792 * 54.70433 * 3 2 1 5 5 C 1.50694 * 109.47462 * 174.70897 * 3 2 1 6 6 H 1.08002 * 120.00439 * 95.27145 * 5 3 2 7 7 C 1.37882 * 119.99816 * 275.27493 * 5 3 2 8 8 N 1.31509 * 119.99844 * 355.09548 * 7 5 3 9 9 Si 1.86797 * 119.99668 * 175.09903 * 7 5 3 10 10 H 1.48495 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46939 * 239.99641 * 9 7 5 12 12 H 1.48501 * 109.47416 * 120.00160 * 9 7 5 13 13 N 1.46905 * 109.46997 * 294.71148 * 3 2 1 14 14 C 1.49568 * 110.99909 * 292.52419 * 13 3 2 15 15 C 1.56250 * 106.47221 * 230.28424 * 14 13 3 16 16 C 1.51456 * 100.75828 * 336.88272 * 15 14 13 17 17 H 1.08999 * 109.41811 * 288.67618 * 16 15 14 18 18 C 1.43989 * 111.00155 * 174.99793 * 13 3 2 19 19 H 1.09002 * 110.00413 * 41.34708 * 18 13 3 20 20 C 1.51544 * 125.10445 * 266.83605 * 18 13 3 21 21 C 1.56242 * 100.70329 * 205.70023 * 20 18 13 22 22 N 1.43469 * 125.45962 * 154.89075 * 16 15 14 23 23 C 1.34777 * 126.99693 * 33.12994 * 22 16 15 24 24 O 1.21636 * 120.00049 * 359.97438 * 23 22 16 25 25 C 1.47263 * 119.99924 * 179.97438 * 23 22 16 26 26 C 1.35214 * 123.14033 * 179.97438 * 25 23 22 27 27 S 1.70941 * 108.82745 * 179.97438 * 26 25 23 28 28 C 1.70778 * 91.12843 * 359.97438 * 27 26 25 29 29 N 1.28651 * 110.55911 * 359.76756 * 28 27 26 30 30 H 1.09004 * 109.47036 * 300.00716 * 1 2 3 31 31 H 1.09008 * 109.46938 * 59.99814 * 1 2 3 32 32 H 1.08997 * 109.47660 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47036 * 239.99284 * 2 1 3 34 34 H 1.09001 * 109.46628 * 120.00464 * 2 1 3 35 35 H 0.97001 * 120.00307 * 5.12021 * 8 7 5 36 36 H 1.09007 * 110.05696 * 349.53755 * 14 13 3 37 37 H 1.09002 * 110.05827 * 111.02913 * 14 13 3 38 38 H 1.08997 * 111.15947 * 219.00637 * 15 14 13 39 39 H 1.08999 * 111.19463 * 94.77088 * 15 14 13 40 40 H 1.08997 * 111.16657 * 323.56683 * 20 18 13 41 41 H 1.09004 * 111.16651 * 87.83608 * 20 18 13 42 42 H 1.09004 * 110.05272 * 142.31415 * 21 20 18 43 43 H 1.08997 * 110.05615 * 263.74547 * 21 20 18 44 44 H 1.07998 * 125.58294 * 359.93072 * 26 25 23 45 45 H 1.07996 * 124.71935 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5413 1.4443 0.1310 6 1 4.1605 1.5023 -0.7520 7 6 4.1246 1.3721 1.3783 8 7 3.3739 1.3987 2.4577 9 14 5.9810 1.2364 1.5347 10 1 6.5924 1.2258 0.1815 11 1 6.3274 -0.0217 2.2438 12 1 6.4992 2.3964 2.3035 13 7 1.6575 2.0971 -1.2582 14 6 2.3841 1.4947 -2.4184 15 6 3.0064 2.6844 -3.2176 16 6 2.1016 3.8194 -2.7853 17 1 1.1188 3.6925 -3.2394 18 6 2.0196 3.4906 -1.2457 19 1 3.0057 3.6157 -0.7984 20 6 1.1088 4.6239 -0.8183 21 6 1.7272 5.8122 -1.6225 22 7 2.4566 5.2094 -2.7757 23 6 3.2812 5.8418 -3.6339 24 8 3.8129 5.2217 -4.5351 25 6 3.5384 7.2837 -3.4806 26 6 4.3536 7.9808 -4.3038 27 16 4.3863 9.6126 -3.7958 28 6 3.3099 9.2706 -2.5148 29 7 2.9833 8.0262 -2.5191 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.4073 1.3943 2.3765 36 1 3.1720 0.8308 -2.0623 37 1 1.6877 0.9435 -3.0504 38 1 2.9388 2.5147 -4.2922 39 1 4.0376 2.8661 -2.9147 40 1 0.0788 4.4369 -1.1218 41 1 1.1751 4.7985 0.2556 42 1 0.9370 6.4708 -1.9832 43 1 2.4194 6.3702 -0.9919 44 1 4.8958 7.5732 -5.1442 45 1 2.9505 9.9984 -1.8024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:18 Heat of formation + Delta-G solvation = 21.827154 kcal Electronic energy + Delta-G solvation = -27853.955567 eV Core-core repulsion = 24191.201200 eV Total energy + Delta-G solvation = -3662.754367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19621 -40.94118 -39.33366 -37.77563 -35.38424 -33.62789 -32.71463 -31.74692 -30.76104 -28.24890 -27.75248 -26.66897 -25.03830 -24.60307 -23.20486 -22.52651 -21.55409 -21.06806 -20.26759 -19.21591 -18.35842 -18.19623 -17.12019 -17.06885 -16.68305 -15.98430 -15.90274 -15.75137 -15.67061 -15.28838 -14.80414 -14.72991 -14.35252 -14.29928 -14.15696 -13.86625 -13.74641 -13.31163 -13.14806 -12.95363 -12.86162 -12.55075 -12.47600 -12.24577 -12.14685 -12.07452 -11.81245 -11.74996 -11.49690 -11.39306 -11.07980 -10.87082 -10.76018 -10.72093 -10.48754 -10.05240 -9.66857 -9.02304 -8.54067 -6.31611 -0.49182 0.31900 0.62647 0.92107 1.44287 1.50764 1.66783 1.82487 2.22697 2.48985 2.84866 3.13949 3.20401 3.43151 3.63094 3.89760 3.94662 4.01338 4.12630 4.20467 4.29987 4.34907 4.39835 4.44215 4.49812 4.55397 4.71620 4.73173 4.82693 4.87406 4.90834 4.94433 5.00459 5.13374 5.14062 5.19270 5.25851 5.32457 5.40340 5.50693 5.58180 5.91608 6.06577 6.31777 6.34528 6.43023 6.55596 6.63255 6.97895 7.46832 8.77973 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.003638 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.586046 B = 7694.249368 C = 8435.418043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C 0.197 3.803 4 H 0.014 0.986 5 C -0.618 4.618 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.933 5.933 9 Si 1.101 2.899 10 H -0.284 1.284 11 H -0.277 1.277 12 H -0.283 1.283 13 N -0.494 5.494 14 C 0.050 3.950 15 C -0.109 4.109 16 C 0.115 3.885 17 H 0.088 0.912 18 C 0.060 3.940 19 H 0.024 0.976 20 C -0.107 4.107 21 C 0.137 3.863 22 N -0.590 5.590 23 C 0.594 3.406 24 O -0.573 6.573 25 C -0.018 4.018 26 C -0.239 4.239 27 S 0.302 5.698 28 C -0.005 4.005 29 N -0.466 5.466 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.188 0.812 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 18.076 -11.524 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C 0.089 3.911 4 H 0.032 0.968 5 C -0.657 4.657 6 H 0.059 0.941 7 C -0.217 4.217 8 N -0.570 5.570 9 Si 0.926 3.074 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.209 1.209 13 N -0.217 5.217 14 C -0.078 4.078 15 C -0.148 4.148 16 C 0.010 3.990 17 H 0.106 0.894 18 C -0.052 4.052 19 H 0.042 0.958 20 C -0.146 4.146 21 C 0.016 3.984 22 N -0.320 5.320 23 C 0.382 3.618 24 O -0.453 6.453 25 C -0.153 4.153 26 C -0.383 4.383 27 S 0.557 5.443 28 C -0.304 4.304 29 N -0.181 5.181 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.205 0.795 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.755 18.377 -10.900 21.439 hybrid contribution -0.184 -1.327 -0.674 1.500 sum -1.939 17.050 -11.575 20.699 Atomic orbital electron populations 1.21611 0.95119 1.00580 1.01382 1.21470 0.95682 0.97533 0.99052 1.19405 0.92470 0.91582 0.87658 0.96762 1.22750 0.93849 1.54571 0.94575 0.94077 1.26746 1.09589 0.93057 0.92352 1.70830 1.06833 1.48327 1.31022 0.83114 0.71299 0.77474 0.75559 1.20992 1.20238 1.20932 1.63512 1.53176 1.00966 1.04009 1.23533 0.96776 0.96052 0.91452 1.22103 0.97595 0.94627 1.00426 1.21721 0.98332 0.81487 0.97495 0.89420 1.22432 0.97683 0.90501 0.94554 0.95823 1.22198 0.99729 0.92550 1.00091 1.22865 0.95774 0.94606 0.85160 1.47648 1.45101 1.09284 1.30000 1.17283 0.77901 0.85740 0.80837 1.90765 1.52059 1.67691 1.34785 1.20153 1.03043 0.94984 0.97102 1.26886 1.04116 1.01274 1.05990 1.82562 1.39208 1.01698 1.20801 1.29205 1.01065 0.95959 1.04178 1.67083 1.24205 1.05587 1.21258 0.94486 0.91703 0.92818 0.93471 0.95598 0.92732 0.92974 0.89401 0.90015 0.94293 0.88600 0.90732 0.88695 0.90253 0.79466 0.74173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.80 71.98 0.71 -4.04 16 2 C -0.10 -4.40 5.34 30.59 0.16 -4.24 16 3 C 0.20 9.54 1.44 44.16 0.06 9.61 16 4 H 0.01 0.78 6.65 -2.39 -0.02 0.77 16 5 C -0.62 -33.77 6.18 25.60 0.16 -33.61 16 6 H 0.04 2.33 6.10 -2.91 -0.02 2.31 16 7 C -0.02 -0.96 5.45 84.66 0.46 -0.50 16 8 N -0.93 -55.66 13.63 21.45 0.29 -55.37 16 9 Si 1.10 51.82 29.91 68.60 2.05 53.87 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 N -0.49 -20.62 4.66 -836.43 -3.90 -24.53 16 14 C 0.05 1.96 5.36 86.91 0.47 2.42 16 15 C -0.11 -4.21 5.99 31.22 0.19 -4.02 16 16 C 0.12 4.21 3.11 46.69 0.15 4.35 16 17 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 18 C 0.06 2.40 2.42 46.62 0.11 2.51 16 19 H 0.02 1.18 6.77 -2.39 -0.02 1.17 16 20 C -0.11 -3.47 6.86 31.24 0.21 -3.25 16 21 C 0.14 4.03 5.67 86.99 0.49 4.52 16 22 N -0.59 -20.42 3.22 -789.07 -2.54 -22.96 16 23 C 0.59 21.12 7.84 86.62 0.68 21.80 16 24 O -0.57 -23.31 16.38 -4.15 -0.07 -23.38 16 25 C -0.02 -0.49 6.63 40.56 0.27 -0.22 16 26 C -0.24 -5.03 10.62 67.12 0.71 -4.32 16 27 S 0.30 3.30 22.97 -56.49 -1.30 2.00 16 28 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 29 N -0.47 -10.77 7.85 -193.02 -1.52 -12.29 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 2.26 7.76 -2.38 -0.02 2.24 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 2.04 7.03 -2.39 -0.02 2.02 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.26 15.71 6.66 -92.71 -0.62 15.09 16 36 H 0.05 2.33 5.40 -2.38 -0.01 2.31 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.90 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 43 H 0.08 2.39 7.16 -2.39 -0.02 2.37 16 44 H 0.19 3.80 8.03 -2.91 -0.02 3.78 16 45 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -71.55 365.83 0.59 -70.95 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.15 Total: 19.17 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.42 Total: -7.47 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.66 Total: -115.15 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.07 Total: -23.38 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.00 kcal Total: -71.55 0.59 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.778 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds