Wall clock time and date at job start Tue Mar 31 2020 19:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47136 * 2 1 4 4 C 1.34228 * 117.00591 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99293 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00824 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.46596 * 299.99963 * 6 4 3 8 8 C 1.53005 * 109.46696 * 59.99396 * 6 4 3 9 9 C 1.52998 * 109.47460 * 293.00189 * 8 6 4 10 10 C 1.50693 * 109.47373 * 179.97438 * 6 4 3 11 11 O 1.21285 * 120.00162 * 4.38988 * 10 6 4 12 12 N 1.34781 * 119.99902 * 184.38607 * 10 6 4 13 13 C 1.46495 * 119.99929 * 174.96778 * 12 10 6 14 14 C 1.50704 * 109.47146 * 180.02562 * 13 12 10 15 15 C 1.38322 * 119.95982 * 269.71931 * 14 13 12 16 16 C 1.38284 * 120.13841 * 179.76203 * 15 14 13 17 17 C 1.38124 * 120.06404 * 0.51733 * 16 15 14 18 18 C 1.38862 * 119.93126 * 359.73821 * 17 16 15 19 19 O 1.35754 * 120.06552 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00418 * 5.71037 * 19 18 17 21 21 H 1.08002 * 119.99697 * 5.25241 * 20 19 18 22 22 C 1.38653 * 120.00083 * 185.24623 * 20 19 18 23 23 N 1.31553 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99844 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46959 * 60.00477 * 24 22 20 26 26 H 1.48500 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47602 * 300.00405 * 24 22 20 28 28 C 1.38070 * 119.96761 * 89.99610 * 14 13 12 29 29 H 1.08996 * 109.47351 * 299.99938 * 1 2 3 30 30 H 1.08994 * 109.46891 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47010 * 239.99690 * 2 1 3 33 33 H 1.09008 * 109.47033 * 119.99623 * 2 1 3 34 34 H 1.08994 * 109.47171 * 53.00527 * 8 6 4 35 35 H 1.09004 * 109.46814 * 173.00145 * 8 6 4 36 36 H 1.09001 * 109.47295 * 297.23706 * 9 8 6 37 37 H 1.09001 * 109.46839 * 57.23663 * 9 8 6 38 38 H 1.08998 * 109.47537 * 177.23870 * 9 8 6 39 39 H 0.97003 * 120.00073 * 354.96764 * 12 10 6 40 40 H 1.08999 * 109.47626 * 59.99854 * 13 12 10 41 41 H 1.09005 * 109.47040 * 299.99832 * 13 12 10 42 42 H 1.07997 * 119.93664 * 0.02562 * 15 14 13 43 43 H 1.07998 * 119.96767 * 180.25464 * 16 15 14 44 44 H 1.08001 * 120.03382 * 179.71840 * 17 16 15 45 45 H 0.97001 * 119.99778 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.03577 * 359.95804 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4692 -0.8912 8 6 3.4495 3.6848 1.2480 9 6 1.9398 3.9181 1.1636 10 6 5.4256 2.8586 -0.0010 11 8 5.9764 1.7810 -0.0809 12 7 6.1595 3.9856 0.0877 13 6 7.6179 3.9031 0.1990 14 6 8.1946 5.2929 0.2836 15 6 8.5574 5.9617 -0.8716 16 6 9.0824 7.2389 -0.7986 17 6 9.2559 7.8466 0.4295 18 6 8.8976 7.1757 1.5913 19 8 9.0675 7.7701 2.7999 20 6 9.4771 9.0547 2.7981 21 1 9.5730 9.5896 1.8648 22 6 9.7752 9.6889 3.9945 23 7 9.6588 9.0372 5.1313 24 14 10.3420 11.4688 3.9921 25 1 9.2891 12.3228 3.3859 26 1 10.5951 11.9097 5.3874 27 1 11.5930 11.5890 3.2009 28 6 8.3656 5.8949 1.5143 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.6765 3.0914 2.1337 35 1 3.9624 4.6444 1.3124 36 1 1.7175 4.5525 0.3056 37 1 1.4301 2.9613 1.0499 38 1 1.5960 4.4067 2.0753 39 1 5.7220 4.8513 0.0780 40 1 8.0210 3.3947 -0.6769 41 1 7.8828 3.3450 1.0970 42 1 8.4265 5.4871 -1.8328 43 1 9.3609 7.7601 -1.7026 44 1 9.6702 8.8424 0.4862 45 1 9.8677 9.4809 5.9683 46 1 8.0857 5.3707 2.4161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345066001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:03 Heat of formation + Delta-G solvation = -132.367319 kcal Electronic energy + Delta-G solvation = -28113.787828 eV Core-core repulsion = 23969.301465 eV Total energy + Delta-G solvation = -4144.486363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09033 -39.57844 -38.98498 -36.95384 -36.53667 -35.23157 -34.40616 -32.36240 -31.91415 -30.85146 -29.27664 -28.72928 -25.99348 -25.15380 -24.04530 -22.57120 -21.86696 -21.67283 -20.83968 -20.15533 -18.06305 -17.98347 -17.30858 -17.08834 -16.55021 -16.45614 -15.54957 -15.40916 -15.06315 -14.75548 -14.47208 -14.35033 -14.14060 -13.85094 -13.70643 -13.51530 -13.46276 -13.10399 -12.99561 -12.64038 -12.45641 -12.35016 -12.22512 -12.09635 -11.98581 -11.69773 -11.40120 -11.38816 -11.21152 -10.93753 -10.86206 -10.73374 -10.69654 -10.51406 -10.47914 -9.66958 -9.46729 -9.00542 -8.90960 -8.27263 -7.35920 -6.51614 -4.11201 1.82594 2.06966 2.22024 2.29352 2.59055 3.08560 3.09477 3.12833 3.34274 3.90459 4.21624 4.43633 4.45973 4.55436 4.61246 4.66156 4.80127 4.92184 4.94927 5.03290 5.05731 5.15240 5.24806 5.34684 5.42711 5.45374 5.51458 5.60882 5.71882 5.73055 5.80161 5.82595 5.90049 6.05449 6.09700 6.22356 6.25023 6.43409 6.52549 6.78741 6.96958 7.15498 7.23998 7.32320 7.48755 7.63577 7.68486 7.92196 8.20642 8.93556 9.61996 10.65958 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.002129 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.217952 B =13151.114130 C =14001.958872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.355 6.355 4 C 0.464 3.536 5 O -0.461 6.461 6 C -0.103 4.103 7 H 0.133 0.867 8 C -0.113 4.113 9 C -0.162 4.162 10 C 0.513 3.487 11 O -0.503 6.503 12 N -0.718 5.718 13 C 0.170 3.830 14 C -0.073 4.073 15 C -0.195 4.195 16 C -0.076 4.076 17 C -0.225 4.225 18 C 0.150 3.850 19 O -0.175 6.175 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.171 4.171 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.271 0.729 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.515 -9.875 -10.641 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.304 3.696 5 O -0.344 6.344 6 C -0.125 4.125 7 H 0.150 0.850 8 C -0.151 4.151 9 C -0.219 4.219 10 C 0.296 3.704 11 O -0.377 6.377 12 N -0.371 5.371 13 C 0.047 3.953 14 C -0.074 4.074 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.191 4.191 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.872 -11.060 -10.172 21.856 hybrid contribution 0.249 1.332 -0.088 1.358 sum -15.623 -9.728 -10.260 21.071 Atomic orbital electron populations 1.21802 0.92595 1.02950 1.03500 1.23028 0.95261 0.80498 1.02696 1.86527 1.24267 1.31993 1.84497 1.22868 0.80838 0.91704 0.74210 1.90823 1.59658 1.42052 1.41903 1.21149 0.94116 0.92901 1.04312 0.84966 1.21516 0.98179 1.00651 0.94758 1.22005 0.94293 1.03358 1.02265 1.19797 0.87965 0.84731 0.77857 1.90857 1.72397 1.27502 1.46894 1.46032 1.07588 1.08529 1.74951 1.20163 0.78428 0.94188 1.02501 1.19247 1.00584 0.94446 0.93087 1.20484 1.08037 0.96233 0.96713 1.20752 0.97474 0.94591 0.96616 1.21249 1.08630 1.02372 0.92204 1.19339 0.92833 0.91853 0.86395 1.83996 1.73745 1.26897 1.23220 1.21263 1.46595 0.84242 0.94858 0.89117 1.25298 0.96664 1.00322 0.94190 1.70024 1.44470 1.37223 0.97750 0.85780 0.79333 0.80374 0.77952 1.19463 1.20242 1.19482 1.20078 1.07285 0.94656 0.97057 0.91438 0.91478 0.90322 0.91276 0.91233 0.90721 0.89415 0.92228 0.90407 0.91991 0.76189 0.90791 0.90796 0.87486 0.87281 0.85468 0.91870 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.35 -3.46 7.43 -39.25 -0.29 -3.75 16 4 C 0.46 5.70 7.23 36.00 0.26 5.96 16 5 O -0.46 -7.57 13.94 -26.86 -0.37 -7.95 16 6 C -0.10 -1.04 2.66 -92.93 -0.25 -1.29 16 7 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.11 -0.97 5.32 -26.73 -0.14 -1.12 16 9 C -0.16 -1.16 9.68 37.16 0.36 -0.80 16 10 C 0.51 6.97 7.18 -10.99 -0.08 6.90 16 11 O -0.50 -9.13 14.21 -18.94 -0.27 -9.40 16 12 N -0.72 -8.92 5.32 -61.47 -0.33 -9.25 16 13 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 15 C -0.20 -3.10 9.70 -39.53 -0.38 -3.48 16 16 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 17 C -0.22 -4.59 9.13 -39.39 -0.36 -4.95 16 18 C 0.15 3.41 6.65 -39.11 -0.26 3.15 16 19 O -0.18 -4.80 9.76 0.04 0.00 -4.80 16 20 C -0.39 -10.60 9.44 30.89 0.29 -10.30 16 21 H 0.09 2.24 5.29 -52.49 -0.28 1.97 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 24 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.17 -3.35 9.64 -39.40 -0.38 -3.73 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.09 0.69 7.23 -51.93 -0.38 0.32 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.60 5.39 -51.93 -0.28 0.32 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.40 4.23 7.70 -40.82 -0.31 3.92 16 40 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.13 2.61 5.71 -52.49 -0.30 2.31 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.83 388.12 -7.67 -41.50 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.59 Total: 6.19 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.40 Total: -9.42 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.43 Total: -33.10 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.93 Total: -25.90 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.83 -7.67 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345066001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.862 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds