Wall clock time and date at job start Tue Mar 31 2020 19:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47136 * 2 1 4 4 C 1.34228 * 117.00591 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99293 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00824 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.46596 * 299.99963 * 6 4 3 8 8 C 1.53005 * 109.46696 * 59.99396 * 6 4 3 9 9 C 1.52998 * 109.47460 * 293.00189 * 8 6 4 10 10 C 1.50693 * 109.47373 * 179.97438 * 6 4 3 11 11 O 1.21285 * 120.00162 * 4.38988 * 10 6 4 12 12 N 1.34781 * 119.99902 * 184.38607 * 10 6 4 13 13 C 1.46495 * 119.99929 * 174.96778 * 12 10 6 14 14 C 1.50704 * 109.47146 * 180.02562 * 13 12 10 15 15 C 1.38322 * 119.95982 * 269.71931 * 14 13 12 16 16 C 1.38284 * 120.13841 * 179.76203 * 15 14 13 17 17 C 1.38124 * 120.06404 * 0.51733 * 16 15 14 18 18 C 1.38862 * 119.93126 * 359.73821 * 17 16 15 19 19 O 1.35754 * 120.06552 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00418 * 5.71037 * 19 18 17 21 21 H 1.08002 * 119.99697 * 5.25241 * 20 19 18 22 22 C 1.38653 * 120.00083 * 185.24623 * 20 19 18 23 23 N 1.31553 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99844 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46959 * 60.00477 * 24 22 20 26 26 H 1.48500 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47602 * 300.00405 * 24 22 20 28 28 C 1.38070 * 119.96761 * 89.99610 * 14 13 12 29 29 H 1.08996 * 109.47351 * 299.99938 * 1 2 3 30 30 H 1.08994 * 109.46891 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47010 * 239.99690 * 2 1 3 33 33 H 1.09008 * 109.47033 * 119.99623 * 2 1 3 34 34 H 1.08994 * 109.47171 * 53.00527 * 8 6 4 35 35 H 1.09004 * 109.46814 * 173.00145 * 8 6 4 36 36 H 1.09001 * 109.47295 * 297.23706 * 9 8 6 37 37 H 1.09001 * 109.46839 * 57.23663 * 9 8 6 38 38 H 1.08998 * 109.47537 * 177.23870 * 9 8 6 39 39 H 0.97003 * 120.00073 * 354.96764 * 12 10 6 40 40 H 1.08999 * 109.47626 * 59.99854 * 13 12 10 41 41 H 1.09005 * 109.47040 * 299.99832 * 13 12 10 42 42 H 1.07997 * 119.93664 * 0.02562 * 15 14 13 43 43 H 1.07998 * 119.96767 * 180.25464 * 16 15 14 44 44 H 1.08001 * 120.03382 * 179.71840 * 17 16 15 45 45 H 0.97001 * 119.99778 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.03577 * 359.95804 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4692 -0.8912 8 6 3.4495 3.6848 1.2480 9 6 1.9398 3.9181 1.1636 10 6 5.4256 2.8586 -0.0010 11 8 5.9764 1.7810 -0.0809 12 7 6.1595 3.9856 0.0877 13 6 7.6179 3.9031 0.1990 14 6 8.1946 5.2929 0.2836 15 6 8.5574 5.9617 -0.8716 16 6 9.0824 7.2389 -0.7986 17 6 9.2559 7.8466 0.4295 18 6 8.8976 7.1757 1.5913 19 8 9.0675 7.7701 2.7999 20 6 9.4771 9.0547 2.7981 21 1 9.5730 9.5896 1.8648 22 6 9.7752 9.6889 3.9945 23 7 9.6588 9.0372 5.1313 24 14 10.3420 11.4688 3.9921 25 1 9.2891 12.3228 3.3859 26 1 10.5951 11.9097 5.3874 27 1 11.5930 11.5890 3.2009 28 6 8.3656 5.8949 1.5143 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.6765 3.0914 2.1337 35 1 3.9624 4.6444 1.3124 36 1 1.7175 4.5525 0.3056 37 1 1.4301 2.9613 1.0499 38 1 1.5960 4.4067 2.0753 39 1 5.7220 4.8513 0.0780 40 1 8.0210 3.3947 -0.6769 41 1 7.8828 3.3450 1.0970 42 1 8.4265 5.4871 -1.8328 43 1 9.3609 7.7601 -1.7026 44 1 9.6702 8.8424 0.4862 45 1 9.8677 9.4809 5.9683 46 1 8.0857 5.3707 2.4161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345066001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:02 Heat of formation + Delta-G solvation = -153.002544 kcal Electronic energy + Delta-G solvation = -28114.682639 eV Core-core repulsion = 23969.301465 eV Total energy + Delta-G solvation = -4145.381173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06355 -40.92645 -40.33496 -38.48398 -37.57486 -36.12841 -35.61123 -34.27030 -32.51558 -32.18450 -30.79171 -29.64264 -27.55134 -26.76781 -24.77326 -23.29687 -23.22519 -22.79671 -22.31205 -21.18140 -19.62852 -18.97736 -18.89820 -18.03941 -17.72895 -17.39287 -16.81059 -16.68255 -16.41462 -16.10409 -16.02257 -15.49931 -15.32711 -15.05294 -14.83186 -14.76497 -14.35785 -14.31009 -13.91662 -13.82733 -13.59581 -13.52444 -13.30031 -13.02808 -12.98781 -12.90504 -12.60395 -12.49621 -12.38849 -12.26246 -12.13596 -12.07952 -11.90257 -11.49461 -11.35563 -11.23054 -10.84463 -10.75223 -10.15225 -9.74444 -9.02144 -8.45783 -6.14100 0.37846 0.71791 1.13028 1.36682 1.37631 1.47223 1.52674 1.53690 2.18274 2.28570 2.85464 3.16963 3.35323 3.39666 3.66908 3.74157 3.84019 4.00770 4.04841 4.10397 4.10772 4.32248 4.36377 4.39819 4.41878 4.48575 4.54278 4.68067 4.74701 4.80565 4.84547 4.95477 5.02313 5.11277 5.12517 5.16666 5.21545 5.26857 5.31594 5.44036 5.55786 5.63300 5.71908 5.73073 6.02400 6.17523 6.45839 6.72327 6.99026 7.16199 7.79380 8.76962 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.002129 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.217952 B =13151.114130 C =14001.958872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.344 6.344 4 C 0.465 3.535 5 O -0.510 6.510 6 C -0.094 4.094 7 H 0.171 0.829 8 C -0.110 4.110 9 C -0.158 4.158 10 C 0.513 3.487 11 O -0.551 6.551 12 N -0.706 5.706 13 C 0.175 3.825 14 C -0.058 4.058 15 C -0.168 4.168 16 C -0.069 4.069 17 C -0.233 4.233 18 C 0.112 3.888 19 O -0.231 6.231 20 C -0.411 4.411 21 H 0.103 0.897 22 C -0.024 4.024 23 N -0.920 5.920 24 Si 1.017 2.983 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.258 1.258 28 C -0.180 4.180 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.415 0.585 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.120 0.880 45 H 0.272 0.728 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 -9.010 -13.863 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.261 6.261 4 C 0.307 3.693 5 O -0.397 6.397 6 C -0.116 4.116 7 H 0.188 0.812 8 C -0.148 4.148 9 C -0.214 4.214 10 C 0.299 3.701 11 O -0.428 6.428 12 N -0.360 5.360 13 C 0.052 3.948 14 C -0.058 4.058 15 C -0.187 4.187 16 C -0.087 4.087 17 C -0.253 4.253 18 C 0.062 3.938 19 O -0.138 6.138 20 C -0.487 4.487 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.558 5.558 24 Si 0.836 3.164 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.182 1.182 28 C -0.199 4.199 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.422 -10.183 -13.452 24.252 hybrid contribution 0.604 0.799 0.645 1.191 sum -16.818 -9.384 -12.807 23.129 Atomic orbital electron populations 1.21807 0.89969 1.04284 1.03972 1.23283 0.97250 0.79619 1.02185 1.86545 1.22832 1.33015 1.83752 1.23287 0.81254 0.91966 0.72791 1.90813 1.60838 1.43661 1.44356 1.21206 0.91368 0.92327 1.06682 0.81171 1.21540 0.99558 1.00458 0.93227 1.21974 0.92697 1.03450 1.03312 1.20325 0.89367 0.83926 0.76509 1.90848 1.73577 1.29262 1.49106 1.45868 1.06757 1.09063 1.74309 1.20027 0.79619 0.92588 1.02584 1.19387 0.99436 0.94950 0.92051 1.20995 1.04381 0.95370 0.97940 1.21159 0.96119 0.94969 0.96468 1.21381 1.08734 1.02272 0.92890 1.19866 0.94497 0.93231 0.86237 1.83958 1.76619 1.27508 1.25721 1.21757 1.46458 0.84842 0.95656 0.87931 1.26573 0.96705 1.05316 0.93526 1.70179 1.47548 1.39579 0.98536 0.84665 0.79342 0.74193 0.78162 1.17968 1.19960 1.18243 1.20207 1.07509 0.93910 0.98323 0.91061 0.90831 0.88581 0.91673 0.92044 0.92386 0.88351 0.90487 0.90952 0.91557 0.74736 0.89618 0.92008 0.83450 0.83376 0.86193 0.91915 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.05 0.78 6.19 71.98 0.45 1.22 16 3 O -0.34 -6.28 7.43 -51.40 -0.38 -6.66 16 4 C 0.47 11.07 7.23 71.24 0.51 11.59 16 5 O -0.51 -17.03 13.94 29.69 0.41 -16.62 16 6 C -0.09 -1.73 2.66 -12.29 -0.03 -1.76 16 7 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 8 C -0.11 -1.69 5.32 30.60 0.16 -1.53 16 9 C -0.16 -1.85 9.68 71.98 0.70 -1.16 16 10 C 0.51 13.27 7.18 87.65 0.63 13.90 16 11 O -0.55 -19.96 14.21 20.37 0.29 -19.67 16 12 N -0.71 -16.02 5.32 -466.79 -2.48 -18.51 16 13 C 0.17 4.69 5.80 85.64 0.50 5.18 16 14 C -0.06 -1.75 5.25 -19.88 -0.10 -1.86 16 15 C -0.17 -4.57 9.70 22.30 0.22 -4.36 16 16 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 17 C -0.23 -9.34 9.13 22.39 0.20 -9.13 16 18 C 0.11 5.24 6.65 22.58 0.15 5.39 16 19 O -0.23 -13.41 9.76 -22.76 -0.22 -13.63 16 20 C -0.41 -23.07 9.44 67.92 0.64 -22.43 16 21 H 0.10 5.21 5.29 -2.91 -0.02 5.20 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -55.53 13.67 21.61 0.30 -55.24 16 24 Si 1.02 41.60 29.55 68.60 2.03 43.62 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 28 C -0.18 -7.11 9.64 22.39 0.22 -6.90 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 35 H 0.10 1.32 7.23 -2.39 -0.02 1.30 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.95 5.39 -2.39 -0.01 0.94 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.42 7.48 7.70 -92.71 -0.71 6.77 16 40 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 41 H 0.06 1.85 8.08 -2.38 -0.02 1.83 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.12 4.91 5.71 -2.91 -0.02 4.89 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -80.01 388.12 5.90 -74.12 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.29 Total: 27.60 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.67 Total: -15.02 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.19 Total: -73.74 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: 0.10 Total: -56.58 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -80.01 5.90 -74.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345066001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.885 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds