Wall clock time and date at job start Tue Mar 31 2020 18:11:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50693 * 109.47335 * 2 1
4 4 N 1.29028 * 124.91959 * 89.99821 * 3 2 1
5 5 C 1.31785 * 117.12894 * 180.02562 * 4 3 2
6 6 C 1.50694 * 122.75048 * 179.97438 * 5 4 3
7 7 C 1.50699 * 109.47421 * 305.02521 * 6 5 4
8 8 O 1.21285 * 119.99956 * 0.02562 * 7 6 5
9 9 N 1.34776 * 120.00215 * 179.97438 * 7 6 5
10 10 C 1.46503 * 119.99904 * 179.97438 * 9 7 6
11 11 C 1.53003 * 109.46725 * 180.02562 * 10 9 7
12 12 H 1.08996 * 115.51840 * 330.58441 * 11 10 9
13 13 C 1.53002 * 117.43880 * 185.16934 * 11 10 9
14 14 H 1.09002 * 119.54204 * 4.11714 * 13 11 10
15 15 C 1.54392 * 118.12144 * 160.81213 * 13 11 10
16 16 N 1.48008 * 104.65217 * 87.21568 * 15 13 11
17 17 C 1.36936 * 127.84267 * 140.40428 * 16 15 13
18 18 H 1.08004 * 119.99581 * 195.62720 * 17 16 15
19 19 C 1.38814 * 119.99921 * 15.62250 * 17 16 15
20 20 N 1.31610 * 119.99685 * 9.00431 * 19 17 16
21 21 Si 1.86798 * 119.99879 * 189.00370 * 19 17 16
22 22 H 1.48501 * 109.47043 * 94.44984 * 21 19 17
23 23 H 1.48494 * 109.47057 * 214.44917 * 21 19 17
24 24 H 1.48506 * 109.47010 * 334.45123 * 21 19 17
25 25 C 1.48153 * 104.31824 * 320.45945 * 16 15 13
26 26 C 1.53002 * 117.43896 * 116.00327 * 11 10 9
27 27 H 1.08990 * 119.54392 * 355.87811 * 26 11 10
28 28 C 1.33638 * 114.49389 * 0.23305 * 5 4 3
29 29 S 1.70976 * 124.91738 * 270.00048 * 3 2 1
30 30 H 1.09004 * 109.47373 * 60.00132 * 1 2 3
31 31 H 1.09007 * 109.47363 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47264 * 299.99754 * 1 2 3
33 33 H 1.09007 * 109.47182 * 239.99503 * 2 1 3
34 34 H 1.09004 * 109.47373 * 119.99868 * 2 1 3
35 35 H 1.09003 * 109.47228 * 65.02284 * 6 5 4
36 36 H 1.08995 * 109.47462 * 185.02158 * 6 5 4
37 37 H 0.97001 * 119.99806 * 0.02562 * 9 7 6
38 38 H 1.09000 * 109.47355 * 300.00305 * 10 9 7
39 39 H 1.08997 * 109.47088 * 60.00974 * 10 9 7
40 40 H 1.09000 * 110.40827 * 205.97393 * 15 13 11
41 41 H 1.09005 * 110.40478 * 328.40576 * 15 13 11
42 42 H 0.97012 * 119.99761 * 179.97438 * 20 19 17
43 43 H 1.08999 * 110.40509 * 280.75061 * 25 16 15
44 44 H 1.08997 * 110.40358 * 158.32378 * 25 16 15
45 45 H 1.08007 * 126.03245 * 179.77029 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4207 0.0000
4 7 2.2785 2.1171 1.0580
5 6 2.7133 3.3483 0.8793
6 6 3.0392 4.2719 2.0245
7 6 1.8443 4.3830 2.9361
8 8 0.8282 3.7718 2.6812
9 7 1.9051 5.1607 4.0352
10 6 0.7433 5.2691 4.9210
11 6 1.0743 6.2068 6.0838
12 1 2.1232 6.2372 6.3785
13 6 0.0267 6.3569 7.1887
14 1 -0.8799 5.7526 7.1554
15 6 0.4848 6.9097 8.5556
16 7 0.3823 8.3798 8.4182
17 6 -0.0554 9.2822 9.3505
18 1 -0.3185 10.2854 9.0491
19 6 -0.1609 8.9076 10.6830
20 7 0.3233 7.7505 11.0815
21 14 -0.9901 10.0457 11.9103
22 1 -2.4200 9.6690 12.0470
23 1 -0.3183 9.9254 13.2291
24 1 -0.8912 11.4476 11.4304
25 6 0.8595 8.6534 7.0426
26 6 0.2736 7.5061 6.1915
27 1 -0.4489 7.7581 5.4154
28 6 2.8363 3.7122 -0.4006
29 16 2.3586 2.3434 -1.4020
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 3.8863 3.8736 2.5829
36 1 3.2921 5.2581 1.6353
37 1 2.7179 5.6492 4.2392
38 1 -0.1035 5.6681 4.3626
39 1 0.4898 4.2829 5.3100
40 1 -0.1739 6.5560 9.3487
41 1 1.5153 6.6176 8.7576
42 1 0.2499 7.4888 12.0128
43 1 1.9487 8.6347 7.0074
44 1 0.4835 9.6153 6.6942
45 1 3.1715 4.6747 -0.7581
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001506829599.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:11:05
Heat of formation + Delta-G solvation = 59.459967 kcal
Electronic energy + Delta-G solvation = -25152.971526 eV
Core-core repulsion = 21491.849041 eV
Total energy + Delta-G solvation = -3661.122485 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.52377 -39.36071 -38.58352 -34.95861 -34.55469 -33.33262 -31.63166 -30.75596
-28.75714 -27.16172 -26.94226 -25.64445 -24.71554 -22.34574 -21.14209 -20.79613
-20.01319 -19.74218 -19.24824 -18.03640 -17.02746 -16.78364 -16.19262 -15.63091
-15.41069 -14.97162 -14.77879 -14.63923 -14.24431 -14.00623 -13.83933 -13.49289
-13.30843 -13.15657 -12.84997 -12.69161 -12.52050 -12.26930 -11.96063 -11.83711
-11.66693 -11.43491 -11.25886 -11.09426 -10.85092 -10.64316 -10.30275 -10.12691
-9.99345 -9.78700 -9.74645 -9.60658 -9.38464 -9.14380 -8.96719 -8.89886
-8.63914 -6.87589 -5.80579 -3.15030 0.45437 1.10405 1.45796 2.49603
2.65667 3.23745 3.37766 3.43022 3.45079 3.72266 4.15106 4.41983
4.45753 4.70759 4.74266 4.83312 4.89015 4.91529 4.95764 5.09091
5.23055 5.30762 5.39508 5.39993 5.44931 5.48416 5.52583 5.64071
5.79768 5.83591 5.91470 5.93411 5.94930 5.98942 6.23200 6.39945
6.56729 6.66169 6.71575 6.91767 7.35618 7.49704 7.52870 7.57501
7.71349 8.20575 8.24063 9.10477 9.73097 10.50202 11.33683
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.033477 B = 0.001711 C = 0.001665
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.196454 B =16364.612727 C =16811.566001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.046 4.046
3 C 0.057 3.943
4 N -0.445 5.445
5 C 0.091 3.909
6 C -0.068 4.068
7 C 0.515 3.485
8 O -0.525 6.525
9 N -0.726 5.726
10 C 0.157 3.843
11 C -0.149 4.149
12 H 0.103 0.897
13 C -0.162 4.162
14 H 0.103 0.897
15 C 0.184 3.816
16 N -0.595 5.595
17 C -0.227 4.227
18 H 0.077 0.923
19 C -0.006 4.006
20 N -0.915 5.915
21 Si 0.913 3.087
22 H -0.288 1.288
23 H -0.290 1.290
24 H -0.280 1.280
25 C 0.154 3.846
26 C -0.172 4.172
27 H 0.102 0.898
28 C -0.259 4.259
29 S 0.105 5.895
30 H 0.056 0.944
31 H 0.067 0.933
32 H 0.066 0.934
33 H 0.084 0.916
34 H 0.094 0.906
35 H 0.111 0.889
36 H 0.110 0.890
37 H 0.401 0.599
38 H 0.065 0.935
39 H 0.070 0.930
40 H 0.090 0.910
41 H 0.023 0.977
42 H 0.254 0.746
43 H 0.024 0.976
44 H 0.049 0.951
45 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.081 -12.660 -25.928 29.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.087 4.087
3 C -0.222 4.222
4 N -0.158 5.158
5 C -0.042 4.042
6 C -0.111 4.111
7 C 0.299 3.701
8 O -0.400 6.400
9 N -0.379 5.379
10 C 0.033 3.967
11 C -0.168 4.168
12 H 0.121 0.879
13 C -0.182 4.182
14 H 0.121 0.879
15 C 0.058 3.942
16 N -0.318 5.318
17 C -0.355 4.355
18 H 0.094 0.906
19 C -0.203 4.203
20 N -0.562 5.562
21 Si 0.743 3.257
22 H -0.215 1.215
23 H -0.217 1.217
24 H -0.205 1.205
25 C 0.028 3.972
26 C -0.192 4.192
27 H 0.120 0.880
28 C -0.398 4.398
29 S 0.361 5.639
30 H 0.075 0.925
31 H 0.086 0.914
32 H 0.085 0.915
33 H 0.102 0.898
34 H 0.113 0.887
35 H 0.129 0.871
36 H 0.128 0.872
37 H 0.235 0.765
38 H 0.084 0.916
39 H 0.088 0.912
40 H 0.108 0.892
41 H 0.041 0.959
42 H 0.064 0.936
43 H 0.042 0.958
44 H 0.068 0.932
45 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 6.132 -13.463 -26.391 30.255
hybrid contribution 0.177 1.488 1.424 2.068
sum 6.309 -11.975 -24.967 28.400
Atomic orbital electron populations
1.21770 0.93323 1.02495 1.03028 1.20221 0.96944 0.87476 1.04082
1.27077 1.02869 1.01744 0.90515 1.65984 1.12992 1.05607 1.31215
1.19554 1.00248 0.91336 0.93018 1.20242 0.98193 0.99111 0.93527
1.20238 0.89322 0.79104 0.81397 1.90736 1.32223 1.44240 1.72837
1.46006 1.17552 1.48878 1.25448 1.20836 0.87587 0.99133 0.89103
1.22527 0.98191 0.98252 0.97825 0.87925 1.24220 0.99050 1.00931
0.94047 0.87933 1.21044 0.98649 0.83531 0.90973 1.45180 1.74398
1.02224 1.09996 1.19014 1.36537 0.93441 0.86530 0.90563 1.24905
1.00901 0.97827 0.96710 1.69900 1.48772 1.21737 1.15755 0.86086
0.79037 0.79849 0.80692 1.21523 1.21663 1.20498 1.21140 0.95557
0.94358 0.86162 1.23972 1.03120 0.90661 1.01426 0.87994 1.26745
1.13000 1.04392 0.95682 1.83876 1.60969 1.05804 1.13286 0.92512
0.91424 0.91492 0.89800 0.88745 0.87077 0.87201 0.76468 0.91630
0.91218 0.89189 0.95880 0.93556 0.95842 0.93225 0.80550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.89 37.15 0.37 -0.74 16
2 C -0.05 -0.35 6.52 -27.89 -0.18 -0.53 16
3 C 0.06 0.58 6.64 -13.46 -0.09 0.49 16
4 N -0.44 -5.66 9.68 -8.06 -0.08 -5.74 16
5 C 0.09 1.00 5.64 -84.23 -0.47 0.53 16
6 C -0.07 -0.61 6.19 -29.04 -0.18 -0.79 16
7 C 0.51 6.53 7.80 -10.99 -0.09 6.45 16
8 O -0.53 -9.02 15.44 5.55 0.09 -8.93 16
9 N -0.73 -8.31 5.56 -60.29 -0.33 -8.64 16
10 C 0.16 2.16 5.95 -4.04 -0.02 2.14 16
11 C -0.15 -2.27 5.40 -90.62 -0.49 -2.76 16
12 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16
13 C -0.16 -3.07 6.85 -89.29 -0.61 -3.68 16
14 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16
15 C 0.18 4.40 5.69 -2.48 -0.01 4.39 16
16 N -0.59 -15.22 3.38 -168.96 -0.57 -15.79 16
17 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16
18 H 0.08 2.06 7.85 -52.48 -0.41 1.64 16
19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16
20 N -0.92 -26.81 10.86 55.49 0.60 -26.21 16
21 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16
22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
25 C 0.15 3.19 7.04 -2.40 -0.02 3.17 16
26 C -0.17 -3.02 6.74 -89.29 -0.60 -3.62 16
27 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16
28 C -0.26 -2.29 11.07 29.12 0.32 -1.96 16
29 S 0.11 0.86 23.18 -107.50 -2.49 -1.63 16
30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16
34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16
36 H 0.11 0.63 8.03 -51.93 -0.42 0.21 16
37 H 0.40 3.48 8.40 -40.82 -0.34 3.14 16
38 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16
39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.09 2.42 6.51 -51.93 -0.34 2.09 16
41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.25 7.20 8.31 -40.81 -0.34 6.86 16
43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16
LS Contribution 386.95 15.07 5.83 5.83
Total: -1.00 -34.69 386.95 -11.28 -45.97
By element:
Atomic # 1 Polarization: 8.86 SS G_CDS: -6.97 Total: 1.89 kcal
Atomic # 6 Polarization: -1.34 SS G_CDS: -2.33 Total: -3.67 kcal
Atomic # 7 Polarization: -56.00 SS G_CDS: -0.38 Total: -56.38 kcal
Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal
Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.69 -11.28 -45.97 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506829599.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.426 kcal
(2) G-P(sol) polarization free energy of solvation -34.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.460 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds