Wall clock time and date at job start Tue Mar 31 2020 18:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46894 * 109.46947 * 141.98538 * 3 2 1 5 5 C 1.46895 * 111.00565 * 66.04057 * 4 3 2 6 6 C 1.47196 * 109.47483 * 293.95599 * 5 4 3 7 7 C 2.90652 * 69.54217 * 173.21312 * 2 1 3 8 8 C 3.80951 * 49.42267 * 173.21238 * 2 1 3 9 9 C 1.37891 * 110.99633 * 190.00241 * 4 3 2 10 10 N 1.31878 * 126.32531 * 236.06696 * 9 4 3 11 11 N 1.28514 * 110.07801 * 179.72808 * 10 9 4 12 12 C 1.31825 * 109.83915 * 0.41863 * 11 10 9 13 13 C 1.46883 * 126.49387 * 179.86349 * 12 11 10 14 14 N 1.33075 * 120.33801 * 179.70532 * 13 12 11 15 15 C 1.31475 * 121.62583 * 179.97438 * 14 13 12 16 16 C 1.38861 * 122.19626 * 0.02676 * 15 14 13 17 17 C 1.36705 * 120.44855 * 359.66165 * 16 15 14 18 18 C 1.41277 * 118.37980 * 0.60079 * 17 16 15 19 19 C 1.40648 * 120.98905 * 179.70984 * 18 17 16 20 20 H 1.07999 * 119.99865 * 210.01112 * 19 18 17 21 21 C 1.39997 * 120.00254 * 30.00694 * 19 18 17 22 22 N 1.30826 * 119.99597 * 10.40078 * 21 19 18 23 23 Si 1.86797 * 120.00128 * 190.39797 * 21 19 18 24 24 H 1.48501 * 109.47066 * 265.13408 * 23 21 19 25 25 H 1.48501 * 109.47329 * 25.13325 * 23 21 19 26 26 H 1.48502 * 109.46870 * 145.13519 * 23 21 19 27 27 N 1.36286 * 126.33129 * 56.04164 * 9 4 3 28 28 C 1.46494 * 127.13703 * 0.02562 * 27 9 4 29 29 H 4.40883 * 5.52226 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46964 * 21.98079 * 3 2 1 31 31 H 1.09003 * 109.47025 * 261.98201 * 3 2 1 32 32 H 1.09001 * 109.46522 * 53.95595 * 5 4 3 33 33 H 1.09000 * 109.47025 * 173.94872 * 5 4 3 34 34 H 1.09002 * 109.46555 * 194.44899 * 8 7 6 35 35 H 1.09001 * 109.47428 * 314.44570 * 8 7 6 36 36 H 1.09002 * 109.47055 * 74.44984 * 8 7 6 37 37 H 1.08002 * 118.90212 * 179.97438 * 15 14 13 38 38 H 1.07998 * 119.76789 * 179.97438 * 16 15 14 39 39 H 1.08000 * 120.80403 * 180.33436 * 17 16 15 40 40 H 0.97005 * 119.99565 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46942 * 269.99535 * 28 27 9 42 42 H 1.09000 * 109.47803 * 29.99784 * 28 27 9 43 43 H 1.09007 * 109.47114 * 150.00585 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.0920 -0.8529 5 6 2.7850 2.4010 -0.2857 6 6 1.3228 2.5693 -0.3058 7 6 0.1581 2.7041 -0.3218 8 6 -1.3040 2.8731 -0.3420 9 6 4.4951 0.9890 -1.0557 10 7 5.3968 1.9142 -0.7906 11 7 6.5699 1.4870 -1.0954 12 6 6.4885 0.2649 -1.5828 13 6 7.6064 -0.5662 -2.0485 14 7 7.3837 -1.7924 -2.5149 15 6 8.3652 -2.5577 -2.9387 16 6 9.6888 -2.1381 -2.9262 17 6 10.0161 -0.8914 -2.4709 18 6 8.9789 -0.0531 -2.0047 19 6 9.2542 1.2377 -1.5186 20 1 8.6244 1.6737 -0.7573 21 6 10.3447 1.9572 -2.0215 22 7 10.9837 1.5234 -3.0774 23 14 10.8874 3.5368 -1.1849 24 1 10.2580 4.6979 -1.8637 25 1 10.4703 3.5107 0.2401 26 1 12.3653 3.6573 -1.2660 27 7 5.1560 -0.0878 -1.5667 28 6 4.5715 -1.3567 -2.0076 29 1 -1.0502 -0.0001 0.0003 30 1 3.0097 -0.9521 -0.3847 31 1 3.0093 0.1442 1.0176 32 1 3.1433 2.4591 0.7421 33 1 3.2498 3.1895 -0.8776 34 1 -1.7826 1.9266 -0.0905 35 1 -1.5923 3.6309 0.3866 36 1 -1.6198 3.1870 -1.3369 37 1 8.1343 -3.5460 -3.3081 38 1 10.4643 -2.7995 -3.2834 39 1 11.0430 -0.5572 -2.4636 40 1 11.7396 2.0218 -3.4257 41 1 4.5388 -2.0524 -1.1691 42 1 3.5602 -1.1828 -2.3751 43 1 5.1809 -1.7793 -2.8066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519176719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:00 Heat of formation + Delta-G solvation = 242.212122 kcal Electronic energy + Delta-G solvation = -27694.005641 eV Core-core repulsion = 23937.656683 eV Total energy + Delta-G solvation = -3756.348957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08960 -38.41430 -37.96133 -34.60942 -34.22469 -33.96257 -32.95153 -31.18316 -30.69521 -29.60557 -28.42015 -27.32727 -26.63288 -25.74522 -24.69353 -22.68624 -21.70264 -20.24800 -20.05043 -18.44949 -17.48587 -17.24446 -16.63474 -16.01177 -15.78757 -15.59706 -15.22254 -14.98150 -14.66267 -14.16491 -13.96157 -13.94932 -13.68098 -13.42152 -13.33008 -12.86869 -12.84193 -12.60504 -12.41247 -12.13256 -11.96818 -11.54219 -11.52124 -11.11763 -11.04859 -10.92440 -10.68870 -10.52258 -10.11588 -9.89028 -9.73258 -9.53689 -9.49584 -9.36707 -9.24826 -8.55692 -8.33619 -8.05140 -7.18229 -6.98188 -4.58536 1.81483 2.12009 2.62282 2.65023 2.80319 2.88079 3.02044 3.02409 3.07772 3.10254 3.16982 3.78408 3.83385 3.96614 4.24157 4.33463 4.52164 4.94082 5.10701 5.12949 5.23144 5.30012 5.34829 5.40960 5.46015 5.49548 5.54583 5.57533 5.65334 5.76790 5.85476 5.91869 6.06662 6.15261 6.32006 6.43976 6.65215 6.73481 6.78306 6.89208 7.00796 7.19119 7.53209 7.58137 7.61078 7.67661 7.78211 7.85789 8.41199 8.50848 8.58768 9.31751 9.56217 9.85908 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.003276 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.287566 B = 8546.085361 C =10218.403360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C 0.158 3.842 4 N -0.441 5.441 5 C 0.187 3.813 6 C -0.172 4.172 7 C -0.178 4.178 8 C -0.037 4.037 9 C 0.312 3.688 10 N -0.320 5.320 11 N -0.274 5.274 12 C 0.299 3.701 13 C 0.006 3.994 14 N -0.447 5.447 15 C -0.037 4.037 16 C -0.140 4.140 17 C -0.124 4.124 18 C 0.099 3.901 19 C -0.387 4.387 20 H 0.119 0.881 21 C 0.068 3.932 22 N -0.776 5.776 23 Si 0.923 3.077 24 H -0.264 1.264 25 H -0.253 1.253 26 H -0.276 1.276 27 N -0.477 5.477 28 C 0.082 3.918 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.288 0.712 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 -1.776 4.233 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.032 3.968 4 N -0.164 5.164 5 C 0.062 3.938 6 C -0.173 4.173 7 C -0.179 4.179 8 C -0.092 4.092 9 C -0.043 4.043 10 N -0.166 5.166 11 N -0.115 5.115 12 C 0.038 3.962 13 C -0.133 4.133 14 N -0.156 5.156 15 C -0.201 4.201 16 C -0.161 4.161 17 C -0.150 4.150 18 C 0.092 3.908 19 C -0.415 4.415 20 H 0.137 0.863 21 C -0.154 4.154 22 N -0.399 5.399 23 Si 0.747 3.253 24 H -0.189 1.189 25 H -0.177 1.177 26 H -0.201 1.201 27 N -0.172 5.172 28 C -0.061 4.061 29 H 0.233 0.767 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.831 -0.725 4.066 15.396 hybrid contribution 0.700 -0.359 0.209 0.814 sum -14.132 -1.084 4.275 14.804 Atomic orbital electron populations 1.24648 0.95571 0.99753 1.00514 1.22326 0.93610 1.00982 1.00456 1.19234 0.85948 0.95227 0.96424 1.58225 1.06534 1.04385 1.47228 1.18791 0.85369 0.89432 1.00216 1.21774 0.93213 1.01380 1.00884 1.22083 0.93591 1.00347 1.01895 1.18859 0.85121 1.02433 1.02822 1.21911 0.89519 0.88324 1.04563 1.74719 0.95460 1.24333 1.22135 1.74758 1.12244 1.06935 1.17527 1.22279 0.80740 0.92664 1.00478 1.18843 0.87754 0.92371 1.14346 1.66764 1.36588 1.04341 1.07937 1.21390 0.89012 0.99274 1.10444 1.21335 0.96893 0.97005 1.00842 1.21401 0.99660 0.92233 1.01712 1.19146 0.88955 0.93525 0.89218 1.20288 1.06977 0.97962 1.16280 0.86339 1.26256 0.94513 1.00693 0.93898 1.69789 1.15819 1.37648 1.16609 0.86009 0.77744 0.80255 0.81316 1.18908 1.17661 1.20059 1.45921 1.07407 1.14106 1.49800 1.22134 0.99311 0.82485 1.02180 0.76742 0.87847 0.91081 0.90678 0.86632 0.90430 0.90445 0.90404 0.86045 0.88179 0.85327 0.90105 0.91394 0.90624 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 15.87 29.55 0.47 -1.50 16 2 C -0.17 -2.18 10.94 -37.12 -0.41 -2.59 16 3 C 0.16 2.12 5.24 -6.61 -0.03 2.08 16 4 N -0.44 -6.98 4.60 -181.28 -0.83 -7.81 16 5 C 0.19 2.76 4.92 -6.62 -0.03 2.73 16 6 C -0.17 -2.37 10.93 -37.14 -0.41 -2.78 16 7 C -0.18 -2.12 11.47 -37.14 -0.43 -2.54 16 8 C -0.04 -0.27 10.23 34.37 0.35 0.08 16 9 C 0.31 5.97 7.18 -319.27 -2.29 3.68 16 10 N -0.32 -7.02 11.14 30.26 0.34 -6.68 16 11 N -0.27 -6.70 9.27 32.51 0.30 -6.40 16 12 C 0.30 7.06 7.75 -153.47 -1.19 5.87 16 13 C 0.01 0.14 6.96 -80.47 -0.56 -0.42 16 14 N -0.45 -10.09 7.88 -8.14 -0.06 -10.15 16 15 C -0.04 -0.78 11.11 -17.47 -0.19 -0.97 16 16 C -0.14 -2.99 9.98 -39.91 -0.40 -3.39 16 17 C -0.12 -2.98 8.72 -38.98 -0.34 -3.32 16 18 C 0.10 2.54 5.70 -104.47 -0.60 1.94 16 19 C -0.39 -9.91 8.12 -38.01 -0.31 -10.22 16 20 H 0.12 3.11 5.76 -52.49 -0.30 2.81 16 21 C 0.07 1.61 5.28 -17.32 -0.09 1.52 16 22 N -0.78 -18.63 10.96 55.55 0.61 -18.02 16 23 Si 0.92 18.41 29.57 -169.99 -5.03 13.39 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.25 -5.08 7.11 56.52 0.40 -4.67 16 26 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 27 N -0.48 -9.43 3.23 -122.27 -0.39 -9.82 16 28 C 0.08 1.28 8.87 59.84 0.53 1.82 16 29 H 0.22 1.46 6.85 -54.08 -0.37 1.09 16 30 H 0.10 1.31 5.12 -51.93 -0.27 1.05 16 31 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 32 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.12 1.79 7.74 -51.93 -0.40 1.39 16 34 H 0.08 0.43 6.61 -51.93 -0.34 0.09 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.13 3.10 6.43 -52.49 -0.34 2.76 16 40 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 41 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 42 H 0.08 1.03 7.72 -51.93 -0.40 0.63 16 43 H 0.11 1.93 6.30 -51.93 -0.33 1.60 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -29.87 364.24 -10.32 -40.19 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.81 Total: 7.82 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -5.92 Total: -8.00 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.04 Total: -58.89 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.87 -10.32 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519176719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.401 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 252.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 242.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds