Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46894 * 109.46947 * 141.98538 * 3 2 1 5 5 C 1.46895 * 111.00565 * 66.04057 * 4 3 2 6 6 C 1.47196 * 109.47483 * 293.95599 * 5 4 3 7 7 C 2.90652 * 69.54217 * 173.21312 * 2 1 3 8 8 C 3.80951 * 49.42267 * 173.21238 * 2 1 3 9 9 C 1.37891 * 110.99633 * 190.00241 * 4 3 2 10 10 N 1.31878 * 126.32531 * 236.06696 * 9 4 3 11 11 N 1.28514 * 110.07801 * 179.72808 * 10 9 4 12 12 C 1.31825 * 109.83915 * 0.41863 * 11 10 9 13 13 C 1.46883 * 126.49387 * 179.86349 * 12 11 10 14 14 N 1.33075 * 120.33801 * 179.70532 * 13 12 11 15 15 C 1.31475 * 121.62583 * 179.97438 * 14 13 12 16 16 C 1.38861 * 122.19626 * 0.02676 * 15 14 13 17 17 C 1.36705 * 120.44855 * 359.66165 * 16 15 14 18 18 C 1.41277 * 118.37980 * 0.60079 * 17 16 15 19 19 C 1.40648 * 120.98905 * 179.70984 * 18 17 16 20 20 H 1.07999 * 119.99865 * 210.01112 * 19 18 17 21 21 C 1.39997 * 120.00254 * 30.00694 * 19 18 17 22 22 N 1.30826 * 119.99597 * 10.40078 * 21 19 18 23 23 Si 1.86797 * 120.00128 * 190.39797 * 21 19 18 24 24 H 1.48501 * 109.47066 * 265.13408 * 23 21 19 25 25 H 1.48501 * 109.47329 * 25.13325 * 23 21 19 26 26 H 1.48502 * 109.46870 * 145.13519 * 23 21 19 27 27 N 1.36286 * 126.33129 * 56.04164 * 9 4 3 28 28 C 1.46494 * 127.13703 * 0.02562 * 27 9 4 29 29 H 4.40883 * 5.52226 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46964 * 21.98079 * 3 2 1 31 31 H 1.09003 * 109.47025 * 261.98201 * 3 2 1 32 32 H 1.09001 * 109.46522 * 53.95595 * 5 4 3 33 33 H 1.09000 * 109.47025 * 173.94872 * 5 4 3 34 34 H 1.09002 * 109.46555 * 194.44899 * 8 7 6 35 35 H 1.09001 * 109.47428 * 314.44570 * 8 7 6 36 36 H 1.09002 * 109.47055 * 74.44984 * 8 7 6 37 37 H 1.08002 * 118.90212 * 179.97438 * 15 14 13 38 38 H 1.07998 * 119.76789 * 179.97438 * 16 15 14 39 39 H 1.08000 * 120.80403 * 180.33436 * 17 16 15 40 40 H 0.97005 * 119.99565 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46942 * 269.99535 * 28 27 9 42 42 H 1.09000 * 109.47803 * 29.99784 * 28 27 9 43 43 H 1.09007 * 109.47114 * 150.00585 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.0920 -0.8529 5 6 2.7850 2.4010 -0.2857 6 6 1.3228 2.5693 -0.3058 7 6 0.1581 2.7041 -0.3218 8 6 -1.3040 2.8731 -0.3420 9 6 4.4951 0.9890 -1.0557 10 7 5.3968 1.9142 -0.7906 11 7 6.5699 1.4870 -1.0954 12 6 6.4885 0.2649 -1.5828 13 6 7.6064 -0.5662 -2.0485 14 7 7.3837 -1.7924 -2.5149 15 6 8.3652 -2.5577 -2.9387 16 6 9.6888 -2.1381 -2.9262 17 6 10.0161 -0.8914 -2.4709 18 6 8.9789 -0.0531 -2.0047 19 6 9.2542 1.2377 -1.5186 20 1 8.6244 1.6737 -0.7573 21 6 10.3447 1.9572 -2.0215 22 7 10.9837 1.5234 -3.0774 23 14 10.8874 3.5368 -1.1849 24 1 10.2580 4.6979 -1.8637 25 1 10.4703 3.5107 0.2401 26 1 12.3653 3.6573 -1.2660 27 7 5.1560 -0.0878 -1.5667 28 6 4.5715 -1.3567 -2.0076 29 1 -1.0502 -0.0001 0.0003 30 1 3.0097 -0.9521 -0.3847 31 1 3.0093 0.1442 1.0176 32 1 3.1433 2.4591 0.7421 33 1 3.2498 3.1895 -0.8776 34 1 -1.7826 1.9266 -0.0905 35 1 -1.5923 3.6309 0.3866 36 1 -1.6198 3.1870 -1.3369 37 1 8.1343 -3.5460 -3.3081 38 1 10.4643 -2.7995 -3.2834 39 1 11.0430 -0.5572 -2.4636 40 1 11.7396 2.0218 -3.4257 41 1 4.5388 -2.0524 -1.1691 42 1 3.5602 -1.1828 -2.3751 43 1 5.1809 -1.7793 -2.8066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519176719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = 228.366925 kcal Electronic energy + Delta-G solvation = -27694.606014 eV Core-core repulsion = 23937.656683 eV Total energy + Delta-G solvation = -3756.949330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.69962 -39.96525 -39.40512 -36.21771 -35.75427 -35.09527 -33.90102 -32.83106 -32.46858 -30.60831 -29.82995 -28.75103 -27.76391 -27.47286 -25.88294 -24.40069 -23.44070 -21.76756 -21.69923 -19.37176 -19.28491 -18.58766 -17.91898 -17.46959 -17.32967 -17.07894 -16.61903 -16.23144 -16.08301 -15.76548 -15.53550 -14.85199 -14.52598 -14.45377 -14.34142 -14.26381 -14.22519 -13.99937 -13.75598 -13.67030 -13.54279 -13.28340 -13.10451 -12.77774 -12.60801 -12.12038 -11.95803 -11.82829 -11.61148 -11.29114 -11.20035 -11.08672 -11.03860 -10.67615 -10.25701 -10.22560 -10.03245 -9.74487 -8.91171 -8.72141 -6.44008 0.14094 0.86792 0.94766 1.25462 1.37534 1.49547 1.53860 1.68302 1.75305 1.92184 2.03117 2.13612 2.19005 2.71741 2.80046 3.32153 3.36745 3.43659 3.66982 3.77534 3.93015 3.99016 4.11533 4.29271 4.33089 4.38083 4.51633 4.52427 4.66719 4.72619 4.76596 4.84495 4.86807 4.88685 4.93306 5.01410 5.11532 5.13538 5.18435 5.25405 5.41201 5.57792 5.82959 5.87118 6.07486 6.21530 6.57380 6.65337 6.68318 6.73569 6.77722 7.54307 7.88745 8.12752 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.003276 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.287566 B = 8546.085361 C =10218.403360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.221 4.221 3 C 0.160 3.840 4 N -0.439 5.439 5 C 0.193 3.807 6 C -0.225 4.225 7 C -0.149 4.149 8 C -0.044 4.044 9 C 0.336 3.664 10 N -0.352 5.352 11 N -0.304 5.304 12 C 0.275 3.725 13 C -0.014 4.014 14 N -0.446 5.446 15 C -0.033 4.033 16 C -0.134 4.134 17 C -0.144 4.144 18 C 0.071 3.929 19 C -0.420 4.420 20 H 0.102 0.898 21 C 0.036 3.964 22 N -0.801 5.801 23 Si 0.982 3.018 24 H -0.269 1.269 25 H -0.261 1.261 26 H -0.254 1.254 27 N -0.475 5.475 28 C 0.081 3.919 29 H 0.254 0.746 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.297 0.703 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.456 -3.029 4.161 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.221 4.221 3 C 0.035 3.965 4 N -0.163 5.163 5 C 0.067 3.933 6 C -0.226 4.226 7 C -0.150 4.150 8 C -0.099 4.099 9 C -0.020 4.020 10 N -0.199 5.199 11 N -0.145 5.145 12 C 0.012 3.988 13 C -0.152 4.152 14 N -0.155 5.155 15 C -0.197 4.197 16 C -0.155 4.155 17 C -0.170 4.170 18 C 0.064 3.936 19 C -0.448 4.448 20 H 0.119 0.881 21 C -0.182 4.182 22 N -0.425 5.425 23 Si 0.803 3.197 24 H -0.194 1.194 25 H -0.184 1.184 26 H -0.178 1.178 27 N -0.170 5.170 28 C -0.061 4.061 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.180 0.820 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.798 -1.998 3.993 18.350 hybrid contribution 1.310 -0.108 0.194 1.329 sum -16.488 -2.106 4.187 17.141 Atomic orbital electron populations 1.25537 0.96302 0.97239 0.97921 1.22301 0.93734 1.03273 1.02831 1.19187 0.87298 0.94235 0.95788 1.58369 1.03858 1.05877 1.48153 1.18612 0.86770 0.88314 0.99572 1.21647 0.93303 1.04029 1.03592 1.23094 0.94643 0.97926 0.99372 1.19228 0.81879 1.04502 1.04311 1.22242 0.90527 0.87217 1.02048 1.74635 0.95441 1.25674 1.24101 1.74670 1.13711 1.07923 1.18204 1.22215 0.82103 0.92760 1.01712 1.19068 0.87898 0.93279 1.14910 1.66876 1.36991 1.03670 1.08003 1.22158 0.88699 1.00417 1.08442 1.21718 0.98198 0.96334 0.99202 1.21443 0.99056 0.93414 1.03118 1.19508 0.90036 0.94144 0.89912 1.20272 1.08350 0.98827 1.17390 0.88067 1.26878 0.94082 1.03071 0.94181 1.69787 1.16470 1.38975 1.17260 0.85167 0.78354 0.76524 0.79673 1.19366 1.18435 1.17752 1.46061 1.06316 1.15243 1.49355 1.22346 0.99849 0.81193 1.02691 0.72989 0.87284 0.91232 0.90924 0.88474 0.87775 0.88624 0.88997 0.81974 0.84568 0.86115 0.89189 0.89287 0.88316 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 15.87 74.32 1.18 -1.46 16 2 C -0.22 -5.12 10.94 31.13 0.34 -4.78 16 3 C 0.16 4.21 5.24 84.50 0.44 4.66 16 4 N -0.44 -14.05 4.60 -727.45 -3.34 -17.39 16 5 C 0.19 5.87 4.92 84.50 0.42 6.29 16 6 C -0.23 -6.04 10.93 31.14 0.34 -5.70 16 7 C -0.15 -3.16 11.47 31.14 0.36 -2.80 16 8 C -0.04 -0.45 10.23 70.18 0.72 0.27 16 9 C 0.34 13.27 7.18 260.25 1.87 15.14 16 10 N -0.35 -16.35 11.14 -58.19 -0.65 -16.99 16 11 N -0.30 -15.83 9.27 -51.07 -0.47 -16.30 16 12 C 0.28 13.55 7.75 135.67 1.05 14.60 16 13 C -0.01 -0.69 6.96 43.40 0.30 -0.39 16 14 N -0.45 -19.98 7.88 -179.68 -1.42 -21.40 16 15 C -0.03 -1.31 11.11 84.90 0.94 -0.37 16 16 C -0.13 -5.56 9.98 22.06 0.22 -5.34 16 17 C -0.14 -7.06 8.72 22.66 0.20 -6.86 16 18 C 0.07 3.81 5.70 -19.76 -0.11 3.70 16 19 C -0.42 -22.79 8.12 23.29 0.19 -22.60 16 20 H 0.10 5.72 5.76 -2.91 -0.02 5.71 16 21 C 0.04 1.80 5.28 85.27 0.45 2.25 16 22 N -0.80 -39.71 10.96 21.84 0.24 -39.47 16 23 Si 0.98 39.23 29.57 68.60 2.03 41.26 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 27 N -0.48 -19.13 3.23 -540.73 -1.75 -20.88 16 28 C 0.08 2.46 8.87 127.77 1.13 3.59 16 29 H 0.25 1.98 6.85 -4.41 -0.03 1.95 16 30 H 0.11 2.65 5.12 -2.39 -0.01 2.64 16 31 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 32 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 33 H 0.10 3.23 7.74 -2.39 -0.02 3.21 16 34 H 0.10 0.56 6.61 -2.39 -0.02 0.55 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.16 5.17 8.06 -2.91 -0.02 5.15 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.12 6.00 6.43 -2.91 -0.02 5.98 16 40 H 0.30 13.13 8.30 -92.70 -0.77 12.36 16 41 H 0.09 2.33 7.66 -2.39 -0.02 2.31 16 42 H 0.10 2.52 7.72 -2.39 -0.02 2.51 16 43 H 0.10 3.41 6.30 -2.38 -0.02 3.39 16 Total: -1.00 -69.36 364.24 5.74 -63.62 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.06 Total: 27.37 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 10.04 Total: 0.19 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -7.39 Total: -132.43 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -69.36 5.74 -63.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519176719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 291.983 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds