Wall clock time and date at job start Tue Mar 31 2020 18:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47169 * 240.00274 * 2 1 3 5 5 N 1.46500 * 109.47112 * 119.99609 * 2 1 3 6 6 C 1.34781 * 119.99486 * 63.55789 * 5 2 1 7 7 S 1.71192 * 120.00131 * 354.98107 * 6 5 2 8 8 N 1.34779 * 119.99426 * 174.98022 * 6 5 2 9 9 N 1.40096 * 120.00141 * 0.02562 * 8 6 5 10 10 C 1.34781 * 119.99581 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00248 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99460 * 180.02562 * 10 9 8 13 13 H 1.08994 * 109.47183 * 60.00320 * 12 10 9 14 14 C 1.50701 * 109.47174 * 299.99454 * 12 10 9 15 15 H 1.07996 * 119.99484 * 125.94369 * 14 12 10 16 16 C 1.37876 * 119.99845 * 305.94966 * 14 12 10 17 17 N 1.31510 * 120.00428 * 5.28260 * 16 14 12 18 18 Si 1.86800 * 119.99540 * 185.28922 * 16 14 12 19 19 H 1.48498 * 109.47230 * 60.00007 * 18 16 14 20 20 H 1.48499 * 109.46935 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47276 * 299.99717 * 18 16 14 22 22 C 1.50702 * 109.46668 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99873 * 115.15865 * 22 12 10 24 24 C 1.38233 * 120.00048 * 180.02562 * 23 22 12 25 25 C 1.38232 * 120.00036 * 359.94899 * 24 23 22 26 26 C 1.38230 * 120.00162 * 0.02562 * 25 24 23 27 27 C 1.38235 * 120.00159 * 295.13863 * 22 12 10 28 28 H 1.09004 * 109.47588 * 304.94300 * 1 2 3 29 29 H 1.09006 * 109.47283 * 64.94007 * 1 2 3 30 30 H 1.08997 * 109.47383 * 184.93787 * 1 2 3 31 31 H 1.09002 * 109.46392 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47014 * 299.99839 * 3 2 1 33 33 H 1.08998 * 109.46764 * 60.00120 * 3 2 1 34 34 H 1.09002 * 109.46820 * 305.98760 * 4 2 1 35 35 H 1.08995 * 109.47399 * 65.99028 * 4 2 1 36 36 H 1.09004 * 109.46994 * 185.99473 * 4 2 1 37 37 H 0.96993 * 120.00174 * 243.55449 * 5 2 1 38 38 H 0.97001 * 119.99648 * 180.02562 * 8 6 5 39 39 H 0.96996 * 120.00214 * 359.97438 * 9 8 6 40 40 H 0.96994 * 120.00218 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99864 * 359.97331 * 23 22 12 42 42 H 1.08000 * 120.00014 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.00172 * 179.72202 * 25 24 23 44 44 H 1.07997 * 120.00518 * 179.97438 * 26 25 24 45 45 H 1.07991 * 120.00179 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.7528 -1.9999 1.3739 7 16 0.7384 -2.8253 0.2692 8 7 2.2861 -2.6594 2.4214 9 7 3.1158 -1.9838 3.3257 10 6 3.6494 -2.6435 4.3729 11 8 3.4110 -3.8219 4.5326 12 6 4.5415 -1.9166 5.3460 13 1 3.9873 -1.0980 5.8052 14 6 5.7384 -1.3653 4.6149 15 1 5.9801 -0.3153 4.6894 16 6 6.5247 -2.2013 3.8509 17 7 6.1731 -3.4563 3.6754 18 14 8.0899 -1.5513 3.0652 19 1 9.0092 -1.0625 4.1240 20 1 8.7497 -2.6407 2.3016 21 1 7.7552 -0.4343 2.1458 22 6 5.0023 -2.8728 6.4157 23 6 6.3426 -3.1928 6.5260 24 6 6.7653 -4.0704 7.5068 25 6 5.8479 -4.6271 8.3781 26 6 4.5077 -4.3068 8.2683 27 6 4.0848 -3.4297 7.2870 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4353 -0.9310 30 1 -0.3634 -1.0238 0.0885 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.5917 -1.7132 -1.3045 35 1 1.7669 -0.1492 -2.1359 36 1 3.1247 -0.8150 -1.1972 37 1 2.5326 -0.2054 1.8602 38 1 2.0953 -3.6019 2.5491 39 1 3.3068 -1.0415 3.1978 40 1 6.7261 -4.0443 3.1376 41 1 7.0594 -2.7579 5.8452 42 1 7.8124 -4.3207 7.5927 43 1 6.1775 -5.3163 9.1417 44 1 3.7908 -4.7420 8.9487 45 1 3.0379 -3.1791 7.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539353599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:17 Heat of formation + Delta-G solvation = 47.412364 kcal Electronic energy + Delta-G solvation = -27309.814084 eV Core-core repulsion = 23648.169176 eV Total energy + Delta-G solvation = -3661.644909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05234 -39.01408 -37.88552 -36.22743 -34.05754 -32.59708 -31.25389 -30.48052 -29.85874 -27.70921 -27.43383 -27.11808 -24.43664 -23.23377 -21.79274 -21.45422 -20.49153 -19.63111 -18.81853 -17.79307 -16.87077 -15.96838 -15.82941 -15.46702 -15.15954 -14.92464 -14.81739 -14.31801 -14.10273 -13.89378 -13.75425 -13.40325 -13.05398 -12.61950 -12.49347 -12.46626 -12.35364 -12.10688 -11.99775 -11.67006 -11.58726 -11.25047 -11.18656 -11.12603 -11.01615 -10.88486 -10.68489 -10.28186 -10.13109 -10.00713 -9.71034 -9.11098 -8.73639 -8.27941 -7.97021 -7.68937 -7.24887 -6.99464 -6.48172 -4.65359 1.55263 1.72376 2.27225 2.38496 2.59606 2.85329 3.01212 3.10627 3.12746 3.70436 4.04190 4.61762 4.72616 4.78113 4.87528 4.91721 5.03586 5.44381 5.58787 5.66215 5.66896 5.72305 5.79022 5.79663 5.85358 5.87476 5.97370 6.10303 6.12598 6.34668 6.40869 6.46690 6.50399 6.61110 6.67747 6.80388 6.84708 6.99174 7.08205 7.29462 7.37600 7.41743 7.50203 7.62263 7.85570 7.92637 8.01221 8.41158 9.02443 9.10984 10.52650 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003823 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.075133 B = 7322.506843 C = 8447.731668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.181 3.819 3 C -0.158 4.158 4 C -0.189 4.189 5 N -0.681 5.681 6 C 0.568 3.432 7 S -0.638 6.638 8 N -0.452 5.452 9 N -0.552 5.552 10 C 0.560 3.440 11 O -0.527 6.527 12 C 0.072 3.928 13 H 0.065 0.935 14 C -0.551 4.551 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.843 5.843 18 Si 0.891 3.109 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.025 4.025 23 C -0.057 4.057 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.113 4.113 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.395 0.605 38 H 0.454 0.546 39 H 0.416 0.584 40 H 0.272 0.728 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 8.716 -0.936 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.097 3.903 3 C -0.216 4.216 4 C -0.248 4.248 5 N -0.315 5.315 6 C 0.203 3.797 7 S -0.511 6.511 8 N -0.175 5.175 9 N -0.304 5.304 10 C 0.349 3.651 11 O -0.399 6.399 12 C 0.049 3.951 13 H 0.083 0.917 14 C -0.588 4.588 15 H 0.092 0.908 16 C -0.137 4.137 17 N -0.475 5.475 18 Si 0.717 3.283 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.026 4.026 23 C -0.074 4.074 24 C -0.165 4.165 25 C -0.156 4.156 26 C -0.160 4.160 27 C -0.131 4.131 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.232 0.768 38 H 0.303 0.697 39 H 0.256 0.744 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.876 7.225 -1.532 8.851 hybrid contribution 1.931 0.913 0.274 2.153 sum -2.946 8.138 -1.258 8.746 Atomic orbital electron populations 1.22744 0.93179 1.07464 1.01149 1.20515 0.95439 0.90979 0.83390 1.22147 1.01847 0.94361 1.03206 1.22778 1.01130 1.05967 0.94962 1.45101 1.54741 1.06803 1.24891 1.22140 0.86181 0.85580 0.85825 1.93059 1.45580 1.68907 1.43592 1.44743 1.40701 1.12779 1.19287 1.45951 1.48865 1.12066 1.23517 1.21839 0.76175 0.87713 0.79352 1.90610 1.59009 1.15840 1.74445 1.17824 0.94377 0.92911 0.90017 0.91718 1.20764 1.10578 0.95919 1.31558 0.90823 1.25101 0.98188 0.94871 0.95545 1.69988 1.37358 1.04425 1.35735 0.86644 0.83131 0.78797 0.79687 1.19501 1.20948 1.19919 1.19687 0.93221 0.96051 0.93657 1.21421 0.96794 0.94434 0.94793 1.21093 0.98532 0.99666 0.97230 1.20855 0.93705 1.01029 1.00012 1.20809 0.95469 1.00049 0.99628 1.20897 0.98445 0.97931 0.95839 0.93590 0.91914 0.86487 0.91813 0.90276 0.91960 0.86286 0.92074 0.93264 0.76782 0.69692 0.74359 0.91701 0.84504 0.87726 0.87832 0.87714 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 8.43 37.16 0.31 -1.85 16 2 C 0.18 2.07 1.06 -131.82 -0.14 1.93 16 3 C -0.16 -1.37 8.59 37.16 0.32 -1.06 16 4 C -0.19 -2.40 8.21 37.16 0.31 -2.09 16 5 N -0.68 -8.68 5.06 -49.30 -0.25 -8.93 16 6 C 0.57 8.95 7.49 -86.91 -0.65 8.30 16 7 S -0.64 -11.37 23.61 -107.50 -2.54 -13.91 16 8 N -0.45 -7.67 6.26 29.96 0.19 -7.49 16 9 N -0.55 -9.50 6.15 31.22 0.19 -9.31 16 10 C 0.56 11.63 5.47 -10.98 -0.06 11.57 16 11 O -0.53 -12.71 14.98 5.56 0.08 -12.62 16 12 C 0.07 1.47 2.67 -94.07 -0.25 1.22 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.55 -11.74 7.61 -34.44 -0.26 -12.00 16 15 H 0.07 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.61 3.19 -17.82 -0.06 1.55 16 17 N -0.84 -20.75 10.44 55.43 0.58 -20.17 16 18 Si 0.89 18.08 29.54 -169.99 -5.02 13.06 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 C -0.02 -0.54 4.51 -104.62 -0.47 -1.01 16 23 C -0.06 -1.23 8.02 -39.58 -0.32 -1.54 16 24 C -0.15 -2.86 10.05 -39.59 -0.40 -3.25 16 25 C -0.14 -2.49 10.05 -39.59 -0.40 -2.88 16 26 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 27 C -0.11 -2.25 8.73 -39.58 -0.35 -2.59 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.12 1.69 4.66 -30.73 -0.14 1.55 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.12 1.82 4.69 -30.00 -0.14 1.68 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 4.41 6.41 -40.82 -0.26 4.15 16 38 H 0.45 8.37 7.98 -182.60 -1.46 6.91 16 39 H 0.42 6.11 6.60 -182.60 -1.20 4.91 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.14 3.13 4.99 -52.48 -0.26 2.87 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -27.51 370.30 -12.09 -39.60 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -8.09 Total: 20.88 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.81 Total: -6.69 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.71 Total: -45.90 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Atomic # 16 Polarization: -11.37 SS G_CDS: -2.54 Total: -13.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.51 -12.09 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539353599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.011 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds