Wall clock time and date at job start Tue Mar 31 2020 18:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47169 * 240.00274 * 2 1 3 5 5 N 1.46500 * 109.47112 * 119.99609 * 2 1 3 6 6 C 1.34781 * 119.99486 * 63.55789 * 5 2 1 7 7 S 1.71192 * 120.00131 * 354.98107 * 6 5 2 8 8 N 1.34779 * 119.99426 * 174.98022 * 6 5 2 9 9 N 1.40096 * 120.00141 * 0.02562 * 8 6 5 10 10 C 1.34781 * 119.99581 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00248 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99460 * 180.02562 * 10 9 8 13 13 H 1.08994 * 109.47183 * 60.00320 * 12 10 9 14 14 C 1.50701 * 109.47174 * 299.99454 * 12 10 9 15 15 H 1.07996 * 119.99484 * 125.94369 * 14 12 10 16 16 C 1.37876 * 119.99845 * 305.94966 * 14 12 10 17 17 N 1.31510 * 120.00428 * 5.28260 * 16 14 12 18 18 Si 1.86800 * 119.99540 * 185.28922 * 16 14 12 19 19 H 1.48498 * 109.47230 * 60.00007 * 18 16 14 20 20 H 1.48499 * 109.46935 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47276 * 299.99717 * 18 16 14 22 22 C 1.50702 * 109.46668 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99873 * 115.15865 * 22 12 10 24 24 C 1.38233 * 120.00048 * 180.02562 * 23 22 12 25 25 C 1.38232 * 120.00036 * 359.94899 * 24 23 22 26 26 C 1.38230 * 120.00162 * 0.02562 * 25 24 23 27 27 C 1.38235 * 120.00159 * 295.13863 * 22 12 10 28 28 H 1.09004 * 109.47588 * 304.94300 * 1 2 3 29 29 H 1.09006 * 109.47283 * 64.94007 * 1 2 3 30 30 H 1.08997 * 109.47383 * 184.93787 * 1 2 3 31 31 H 1.09002 * 109.46392 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47014 * 299.99839 * 3 2 1 33 33 H 1.08998 * 109.46764 * 60.00120 * 3 2 1 34 34 H 1.09002 * 109.46820 * 305.98760 * 4 2 1 35 35 H 1.08995 * 109.47399 * 65.99028 * 4 2 1 36 36 H 1.09004 * 109.46994 * 185.99473 * 4 2 1 37 37 H 0.96993 * 120.00174 * 243.55449 * 5 2 1 38 38 H 0.97001 * 119.99648 * 180.02562 * 8 6 5 39 39 H 0.96996 * 120.00214 * 359.97438 * 9 8 6 40 40 H 0.96994 * 120.00218 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99864 * 359.97331 * 23 22 12 42 42 H 1.08000 * 120.00014 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.00172 * 179.72202 * 25 24 23 44 44 H 1.07997 * 120.00518 * 179.97438 * 26 25 24 45 45 H 1.07991 * 120.00179 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.7528 -1.9999 1.3739 7 16 0.7384 -2.8253 0.2692 8 7 2.2861 -2.6594 2.4214 9 7 3.1158 -1.9838 3.3257 10 6 3.6494 -2.6435 4.3729 11 8 3.4110 -3.8219 4.5326 12 6 4.5415 -1.9166 5.3460 13 1 3.9873 -1.0980 5.8052 14 6 5.7384 -1.3653 4.6149 15 1 5.9801 -0.3153 4.6894 16 6 6.5247 -2.2013 3.8509 17 7 6.1731 -3.4563 3.6754 18 14 8.0899 -1.5513 3.0652 19 1 9.0092 -1.0625 4.1240 20 1 8.7497 -2.6407 2.3016 21 1 7.7552 -0.4343 2.1458 22 6 5.0023 -2.8728 6.4157 23 6 6.3426 -3.1928 6.5260 24 6 6.7653 -4.0704 7.5068 25 6 5.8479 -4.6271 8.3781 26 6 4.5077 -4.3068 8.2683 27 6 4.0848 -3.4297 7.2870 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4353 -0.9310 30 1 -0.3634 -1.0238 0.0885 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.5917 -1.7132 -1.3045 35 1 1.7669 -0.1492 -2.1359 36 1 3.1247 -0.8150 -1.1972 37 1 2.5326 -0.2054 1.8602 38 1 2.0953 -3.6019 2.5491 39 1 3.3068 -1.0415 3.1978 40 1 6.7261 -4.0443 3.1376 41 1 7.0594 -2.7579 5.8452 42 1 7.8124 -4.3207 7.5927 43 1 6.1775 -5.3163 9.1417 44 1 3.7908 -4.7420 8.9487 45 1 3.0379 -3.1791 7.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539353599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:16 Heat of formation + Delta-G solvation = 32.692823 kcal Electronic energy + Delta-G solvation = -27310.452372 eV Core-core repulsion = 23648.169176 eV Total energy + Delta-G solvation = -3662.283196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43839 -40.37362 -39.28341 -37.57179 -35.71621 -33.88357 -32.83691 -31.78689 -31.36279 -29.07265 -28.44886 -28.08967 -26.06160 -24.53031 -23.18000 -22.95527 -21.87988 -20.92519 -20.14193 -19.24057 -18.35239 -17.38739 -17.25852 -17.00583 -16.51945 -16.24059 -16.14881 -15.71315 -15.48949 -15.22001 -14.83535 -14.74560 -14.57245 -14.12874 -14.02606 -13.81469 -13.22802 -13.13390 -13.08386 -13.02887 -12.72624 -12.65643 -12.58788 -12.49742 -12.32318 -12.23330 -11.87772 -11.84872 -11.55451 -11.31744 -11.30656 -10.78586 -10.43807 -9.59717 -9.47343 -9.20279 -8.64496 -8.36283 -8.21338 -6.39726 0.24289 0.34025 0.79868 0.89012 1.23768 1.39340 1.45568 1.49618 1.70803 2.10215 2.37077 3.06693 3.20662 3.50622 3.84553 4.00994 4.14871 4.24975 4.31741 4.35379 4.44869 4.60029 4.62869 4.71716 4.81161 4.86310 4.93678 4.95655 4.99961 5.10213 5.10577 5.13417 5.24370 5.36238 5.38407 5.50948 5.61847 5.65908 5.73014 5.81354 5.83609 5.89667 5.93429 6.27902 6.32401 6.45654 6.47320 6.74467 7.30419 7.55245 8.77475 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003823 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.075133 B = 7322.506843 C = 8447.731668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.176 3.824 3 C -0.152 4.152 4 C -0.187 4.187 5 N -0.664 5.664 6 C 0.578 3.422 7 S -0.676 6.676 8 N -0.460 5.460 9 N -0.538 5.538 10 C 0.562 3.438 11 O -0.566 6.566 12 C 0.064 3.936 13 H 0.088 0.912 14 C -0.540 4.540 15 H 0.085 0.915 16 C 0.042 3.958 17 N -0.873 5.873 18 Si 0.936 3.064 19 H -0.267 1.267 20 H -0.302 1.302 21 H -0.265 1.265 22 C -0.045 4.045 23 C -0.083 4.083 24 C -0.156 4.156 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.127 4.127 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.405 0.595 38 H 0.446 0.554 39 H 0.428 0.572 40 H 0.259 0.741 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 10.717 -0.296 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 C -0.209 4.209 4 C -0.246 4.246 5 N -0.297 5.297 6 C 0.211 3.789 7 S -0.550 6.550 8 N -0.183 5.183 9 N -0.290 5.290 10 C 0.352 3.648 11 O -0.440 6.440 12 C 0.041 3.959 13 H 0.106 0.894 14 C -0.577 4.577 15 H 0.103 0.897 16 C -0.163 4.163 17 N -0.507 5.507 18 Si 0.763 3.237 19 H -0.192 1.192 20 H -0.229 1.229 21 H -0.189 1.189 22 C -0.047 4.047 23 C -0.101 4.101 24 C -0.175 4.175 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.145 4.145 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.244 0.756 38 H 0.294 0.706 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.922 9.335 -0.915 10.593 hybrid contribution 1.906 0.334 0.083 1.937 sum -3.016 9.670 -0.832 10.163 Atomic orbital electron populations 1.22631 0.93079 1.05902 1.02483 1.20775 0.95550 0.92386 0.82093 1.22134 1.01913 0.92049 1.04846 1.22694 1.00207 1.05074 0.96651 1.45273 1.53474 1.05621 1.25349 1.21923 0.85638 0.86456 0.84837 1.93169 1.47020 1.70331 1.44462 1.44700 1.41278 1.12568 1.19747 1.45604 1.48242 1.12349 1.22852 1.21815 0.75942 0.87192 0.79880 1.90583 1.60516 1.17432 1.75508 1.17958 0.94353 0.93552 0.90044 0.89410 1.21012 1.10328 0.96163 1.30221 0.89736 1.25546 0.99876 0.94747 0.96094 1.70140 1.38027 1.05479 1.37079 0.85929 0.80980 0.77848 0.78969 1.19157 1.22897 1.18938 1.19844 0.93501 0.96945 0.94365 1.21407 0.96810 0.96073 0.95808 1.21370 0.99948 0.99177 0.96960 1.21237 0.93360 1.00815 1.00102 1.21214 0.96399 0.99120 0.99348 1.21089 0.98638 0.98537 0.96249 0.92641 0.90248 0.89288 0.91693 0.88441 0.90583 0.88962 0.89894 0.94215 0.75575 0.70630 0.72890 0.93107 0.86343 0.86011 0.84468 0.84734 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.43 71.98 0.61 -3.28 16 2 C 0.18 3.66 1.06 3.60 0.00 3.66 16 3 C -0.15 -2.12 8.59 71.99 0.62 -1.50 16 4 C -0.19 -4.50 8.21 71.98 0.59 -3.91 16 5 N -0.66 -15.93 5.06 -309.89 -1.57 -17.50 16 6 C 0.58 18.05 7.49 179.05 1.34 19.39 16 7 S -0.68 -24.49 23.61 -56.49 -1.33 -25.82 16 8 N -0.46 -15.69 6.26 -59.12 -0.37 -16.06 16 9 N -0.54 -18.26 6.15 -173.53 -1.07 -19.33 16 10 C 0.56 23.32 5.47 87.66 0.48 23.80 16 11 O -0.57 -27.70 14.98 -3.02 -0.05 -27.75 16 12 C 0.06 2.58 2.67 -13.03 -0.03 2.54 16 13 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 14 C -0.54 -22.53 7.61 25.60 0.19 -22.34 16 15 H 0.08 3.29 7.82 -2.91 -0.02 3.27 16 16 C 0.04 1.90 3.19 84.65 0.27 2.17 16 17 N -0.87 -43.82 10.44 21.45 0.22 -43.60 16 18 Si 0.94 36.94 29.54 68.60 2.03 38.97 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 C -0.05 -1.93 4.51 -19.86 -0.09 -2.02 16 23 C -0.08 -3.60 8.02 22.27 0.18 -3.42 16 24 C -0.16 -5.93 10.05 22.27 0.22 -5.71 16 25 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 26 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 27 C -0.13 -4.95 8.73 22.27 0.19 -4.76 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 2.51 4.66 -15.87 -0.07 2.44 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 2.81 4.69 -16.33 -0.08 2.74 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.40 8.18 6.41 -92.71 -0.59 7.58 16 38 H 0.45 16.93 7.98 -213.32 -1.70 15.22 16 39 H 0.43 11.98 6.60 -213.33 -1.41 10.57 16 40 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 41 H 0.12 5.49 4.99 -2.91 -0.01 5.48 16 42 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 45 H 0.11 4.00 8.06 -2.92 -0.02 3.98 16 Total: -1.00 -60.54 370.30 0.10 -60.44 By element: Atomic # 1 Polarization: 57.98 SS G_CDS: -2.79 Total: 55.19 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.03 Total: -4.55 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -2.78 Total: -96.49 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 16 Polarization: -24.49 SS G_CDS: -1.33 Total: -25.82 kcal Total: -60.54 0.10 -60.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539353599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.134 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds