Wall clock time and date at job start Tue Mar 31 2020 18:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46709 * 2 1 4 4 C 1.52999 * 109.47457 * 240.00043 * 2 1 3 5 5 N 1.46499 * 109.47066 * 119.99946 * 2 1 3 6 6 C 1.34774 * 119.99963 * 63.10644 * 5 2 1 7 7 S 1.71195 * 120.00146 * 354.98095 * 6 5 2 8 8 N 1.34775 * 120.00017 * 174.98537 * 6 5 2 9 9 N 1.40098 * 120.00013 * 359.97438 * 8 6 5 10 10 C 1.34782 * 120.00499 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99506 * 359.97438 * 10 9 8 12 12 C 1.50692 * 120.00447 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.47329 * 300.00016 * 12 10 9 14 14 C 1.50706 * 109.47297 * 59.99963 * 12 10 9 15 15 H 1.08000 * 119.99911 * 234.22405 * 14 12 10 16 16 C 1.37877 * 119.99700 * 53.94538 * 14 12 10 17 17 N 1.31509 * 120.00374 * 4.13091 * 16 14 12 18 18 Si 1.86799 * 119.99676 * 184.12962 * 16 14 12 19 19 H 1.48498 * 109.47440 * 90.00427 * 18 16 14 20 20 H 1.48507 * 109.46817 * 210.00170 * 18 16 14 21 21 H 1.48496 * 109.47283 * 329.99859 * 18 16 14 22 22 C 1.50698 * 109.47347 * 179.97438 * 12 10 9 23 23 C 1.38234 * 120.00366 * 243.93620 * 22 12 10 24 24 C 1.38240 * 119.99757 * 179.81321 * 23 22 12 25 25 C 1.38228 * 119.99957 * 0.38972 * 24 23 22 26 26 C 1.38233 * 120.00267 * 359.86501 * 25 24 23 27 27 C 1.38231 * 120.00079 * 359.95082 * 26 25 24 28 28 H 1.08995 * 109.47604 * 304.91794 * 1 2 3 29 29 H 1.09001 * 109.47157 * 64.92644 * 1 2 3 30 30 H 1.09006 * 109.46931 * 184.91675 * 1 2 3 31 31 H 1.08999 * 109.46668 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47401 * 299.99554 * 3 2 1 33 33 H 1.08998 * 109.46977 * 60.00103 * 3 2 1 34 34 H 1.08997 * 109.47078 * 306.33515 * 4 2 1 35 35 H 1.09005 * 109.47145 * 66.33267 * 4 2 1 36 36 H 1.08996 * 109.47318 * 186.33195 * 4 2 1 37 37 H 0.97002 * 119.99922 * 243.10581 * 5 2 1 38 38 H 0.96994 * 120.00174 * 179.97438 * 8 6 5 39 39 H 0.97007 * 119.99978 * 0.02562 * 9 8 6 40 40 H 0.96997 * 120.00608 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.99711 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99236 * 180.22892 * 24 23 22 43 43 H 1.08008 * 120.00023 * 179.83253 * 25 24 23 44 44 H 1.08004 * 119.99992 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00236 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7451 -1.9977 1.3783 7 16 0.7213 -2.8195 0.2796 8 7 2.2779 -2.6579 2.4256 9 7 3.1161 -1.9856 3.3245 10 6 3.6494 -2.6459 4.3715 11 8 3.4032 -3.8221 4.5357 12 6 4.5505 -1.9225 5.3388 13 1 5.4168 -1.5314 4.8053 14 6 3.7950 -0.7833 5.9734 15 1 4.1959 0.2187 5.9341 16 6 2.5893 -1.0196 6.5991 17 7 2.1376 -2.2493 6.7135 18 14 1.5973 0.4073 7.2842 19 1 0.6724 0.9144 6.2390 20 1 0.8129 -0.0537 8.4579 21 1 2.5180 1.4954 7.7007 22 6 5.0089 -2.8788 6.4095 23 6 4.6427 -2.6697 7.7259 24 6 5.0601 -3.5491 8.7075 25 6 5.8503 -4.6330 8.3737 26 6 6.2210 -4.8391 7.0581 27 6 5.8005 -3.9619 6.0760 28 1 -0.3634 0.5882 0.8426 29 1 -0.3633 0.4355 -0.9308 30 1 -0.3633 -1.0240 0.0881 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.5871 -1.7109 -1.3077 35 1 1.7722 -0.1461 -2.1356 36 1 3.1241 -0.8204 -1.1943 37 1 2.5382 -0.2071 1.8571 38 1 2.0811 -3.5986 2.5569 39 1 3.3127 -1.0447 3.1934 40 1 1.2896 -2.4156 7.1540 41 1 4.0283 -1.8208 7.9871 42 1 4.7708 -3.3877 9.7354 43 1 6.1787 -5.3186 9.1410 44 1 6.8388 -5.6858 6.7974 45 1 6.0897 -4.1232 5.0480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539353603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:20 Heat of formation + Delta-G solvation = 48.594949 kcal Electronic energy + Delta-G solvation = -27301.225350 eV Core-core repulsion = 23639.631722 eV Total energy + Delta-G solvation = -3661.593628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.09124 -39.02539 -37.87843 -36.26016 -34.07964 -32.63877 -31.25026 -30.49888 -29.78585 -27.73002 -27.44544 -27.14049 -24.42184 -23.25249 -21.81777 -21.41996 -20.48296 -19.66022 -18.84949 -17.81923 -16.85654 -15.94680 -15.86628 -15.46523 -15.21657 -14.91684 -14.85449 -14.34012 -14.09855 -13.84820 -13.78082 -13.42168 -13.08476 -12.58721 -12.50580 -12.43672 -12.32656 -12.13459 -12.03794 -11.69253 -11.53348 -11.30427 -11.19735 -11.18358 -10.99337 -10.90885 -10.68627 -10.29096 -10.15710 -9.99591 -9.65532 -9.09287 -8.75948 -8.32642 -7.91269 -7.64399 -7.28376 -7.01769 -6.46333 -4.66524 1.52616 1.68279 2.30534 2.44248 2.58021 2.82075 2.99894 3.10888 3.12609 3.63857 4.03102 4.59330 4.72368 4.79957 4.85047 4.90958 5.01188 5.42130 5.56141 5.63633 5.70554 5.74841 5.77526 5.79773 5.83310 5.89962 5.96006 6.06980 6.16647 6.34418 6.44326 6.44955 6.47099 6.65984 6.66770 6.77702 6.88792 7.02175 7.07461 7.33761 7.38418 7.44190 7.54922 7.58411 7.83238 7.95371 8.06052 8.41072 9.00156 9.06194 10.52117 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.003814 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.926077 B = 7340.167675 C = 8421.009645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.181 3.819 3 C -0.158 4.158 4 C -0.186 4.186 5 N -0.681 5.681 6 C 0.568 3.432 7 S -0.636 6.636 8 N -0.454 5.454 9 N -0.553 5.553 10 C 0.555 3.445 11 O -0.525 6.525 12 C 0.072 3.928 13 H 0.065 0.935 14 C -0.549 4.549 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.841 5.841 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.026 4.026 23 C -0.044 4.044 24 C -0.150 4.150 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.113 4.113 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.395 0.605 38 H 0.454 0.546 39 H 0.416 0.584 40 H 0.271 0.729 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 6.461 -6.962 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.096 3.904 3 C -0.216 4.216 4 C -0.246 4.246 5 N -0.315 5.315 6 C 0.203 3.797 7 S -0.509 6.509 8 N -0.177 5.177 9 N -0.306 5.306 10 C 0.344 3.656 11 O -0.397 6.397 12 C 0.049 3.951 13 H 0.083 0.917 14 C -0.586 4.586 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.473 5.473 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.027 4.027 23 C -0.062 4.062 24 C -0.168 4.168 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.131 4.131 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.233 0.767 38 H 0.303 0.697 39 H 0.257 0.743 40 H 0.082 0.918 41 H 0.157 0.843 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.766 5.048 -7.369 9.350 hybrid contribution -0.060 1.466 1.458 2.069 sum 2.705 6.513 -5.911 9.202 Atomic orbital electron populations 1.22768 0.93176 1.07653 1.01217 1.20525 0.95588 0.90981 0.83271 1.22146 1.01632 0.94407 1.03374 1.22752 1.00905 1.05896 0.95015 1.45124 1.54476 1.06955 1.24976 1.22155 0.85928 0.85549 0.86093 1.93072 1.44701 1.68918 1.44229 1.44768 1.41463 1.12788 1.18702 1.45998 1.47451 1.12620 1.24483 1.21965 0.79631 0.86981 0.77006 1.90626 1.60767 1.16798 1.71469 1.17834 0.93361 0.93596 0.90317 0.91703 1.20809 1.05493 0.93293 1.39038 0.90723 1.25116 0.97633 0.95871 0.95375 1.70089 1.19951 1.18237 1.39065 0.86575 0.80287 0.82298 0.79087 1.20400 1.20730 1.19295 1.19646 0.93950 0.94221 0.94910 1.21405 0.94368 0.98572 0.91854 1.21083 1.00311 0.96553 0.98896 1.20842 1.00475 0.98326 0.95880 1.20777 1.02497 0.99560 0.93450 1.20888 0.99071 0.95296 0.97895 0.93488 0.91895 0.86386 0.91916 0.90246 0.91843 0.86390 0.92027 0.93361 0.76721 0.69680 0.74268 0.91844 0.84336 0.87839 0.87959 0.87844 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 8.42 37.16 0.31 -2.01 16 2 C 0.18 2.03 1.06 -131.82 -0.14 1.89 16 3 C -0.16 -1.33 8.59 37.16 0.32 -1.01 16 4 C -0.19 -2.16 8.22 37.16 0.31 -1.85 16 5 N -0.68 -8.59 5.06 -49.30 -0.25 -8.84 16 6 C 0.57 8.86 7.49 -86.92 -0.65 8.21 16 7 S -0.64 -11.25 23.61 -107.50 -2.54 -13.79 16 8 N -0.45 -7.62 6.26 29.96 0.19 -7.44 16 9 N -0.55 -9.42 6.15 31.22 0.19 -9.23 16 10 C 0.55 11.47 5.68 -10.99 -0.06 11.41 16 11 O -0.53 -12.61 15.04 5.55 0.08 -12.53 16 12 C 0.07 1.47 2.68 -94.08 -0.25 1.22 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.55 -11.65 7.58 -34.44 -0.26 -11.91 16 15 H 0.07 1.52 7.82 -52.49 -0.41 1.11 16 16 C 0.07 1.54 3.45 -17.82 -0.06 1.48 16 17 N -0.84 -20.68 10.11 55.43 0.56 -20.12 16 18 Si 0.89 18.02 29.54 -169.99 -5.02 13.00 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 22 C -0.03 -0.56 4.45 -104.62 -0.47 -1.03 16 23 C -0.04 -0.96 7.73 -39.58 -0.31 -1.27 16 24 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 25 C -0.14 -2.51 10.05 -39.59 -0.40 -2.91 16 26 C -0.14 -2.69 10.05 -39.59 -0.40 -3.09 16 27 C -0.11 -2.28 8.69 -39.58 -0.34 -2.62 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.79 4.60 -29.94 -0.14 1.65 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.12 1.68 4.74 -30.82 -0.15 1.54 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.40 4.41 6.41 -40.82 -0.26 4.14 16 38 H 0.45 8.27 7.98 -182.61 -1.46 6.81 16 39 H 0.42 6.02 6.60 -182.59 -1.21 4.81 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.14 3.19 4.96 -52.49 -0.26 2.93 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -27.53 370.05 -12.09 -39.63 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -8.09 Total: 20.58 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.80 Total: -6.85 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.69 Total: -45.62 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -2.54 Total: -13.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.53 -12.09 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539353603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.222 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds