Wall clock time and date at job start Tue Mar 31 2020 18:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46709 * 2 1 4 4 C 1.52999 * 109.47457 * 240.00043 * 2 1 3 5 5 N 1.46499 * 109.47066 * 119.99946 * 2 1 3 6 6 C 1.34774 * 119.99963 * 63.10644 * 5 2 1 7 7 S 1.71195 * 120.00146 * 354.98095 * 6 5 2 8 8 N 1.34775 * 120.00017 * 174.98537 * 6 5 2 9 9 N 1.40098 * 120.00013 * 359.97438 * 8 6 5 10 10 C 1.34782 * 120.00499 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99506 * 359.97438 * 10 9 8 12 12 C 1.50692 * 120.00447 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.47329 * 300.00016 * 12 10 9 14 14 C 1.50706 * 109.47297 * 59.99963 * 12 10 9 15 15 H 1.08000 * 119.99911 * 234.22405 * 14 12 10 16 16 C 1.37877 * 119.99700 * 53.94538 * 14 12 10 17 17 N 1.31509 * 120.00374 * 4.13091 * 16 14 12 18 18 Si 1.86799 * 119.99676 * 184.12962 * 16 14 12 19 19 H 1.48498 * 109.47440 * 90.00427 * 18 16 14 20 20 H 1.48507 * 109.46817 * 210.00170 * 18 16 14 21 21 H 1.48496 * 109.47283 * 329.99859 * 18 16 14 22 22 C 1.50698 * 109.47347 * 179.97438 * 12 10 9 23 23 C 1.38234 * 120.00366 * 243.93620 * 22 12 10 24 24 C 1.38240 * 119.99757 * 179.81321 * 23 22 12 25 25 C 1.38228 * 119.99957 * 0.38972 * 24 23 22 26 26 C 1.38233 * 120.00267 * 359.86501 * 25 24 23 27 27 C 1.38231 * 120.00079 * 359.95082 * 26 25 24 28 28 H 1.08995 * 109.47604 * 304.91794 * 1 2 3 29 29 H 1.09001 * 109.47157 * 64.92644 * 1 2 3 30 30 H 1.09006 * 109.46931 * 184.91675 * 1 2 3 31 31 H 1.08999 * 109.46668 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47401 * 299.99554 * 3 2 1 33 33 H 1.08998 * 109.46977 * 60.00103 * 3 2 1 34 34 H 1.08997 * 109.47078 * 306.33515 * 4 2 1 35 35 H 1.09005 * 109.47145 * 66.33267 * 4 2 1 36 36 H 1.08996 * 109.47318 * 186.33195 * 4 2 1 37 37 H 0.97002 * 119.99922 * 243.10581 * 5 2 1 38 38 H 0.96994 * 120.00174 * 179.97438 * 8 6 5 39 39 H 0.97007 * 119.99978 * 0.02562 * 9 8 6 40 40 H 0.96997 * 120.00608 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.99711 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99236 * 180.22892 * 24 23 22 43 43 H 1.08008 * 120.00023 * 179.83253 * 25 24 23 44 44 H 1.08004 * 119.99992 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00236 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7451 -1.9977 1.3783 7 16 0.7213 -2.8195 0.2796 8 7 2.2779 -2.6579 2.4256 9 7 3.1161 -1.9856 3.3245 10 6 3.6494 -2.6459 4.3715 11 8 3.4032 -3.8221 4.5357 12 6 4.5505 -1.9225 5.3388 13 1 5.4168 -1.5314 4.8053 14 6 3.7950 -0.7833 5.9734 15 1 4.1959 0.2187 5.9341 16 6 2.5893 -1.0196 6.5991 17 7 2.1376 -2.2493 6.7135 18 14 1.5973 0.4073 7.2842 19 1 0.6724 0.9144 6.2390 20 1 0.8129 -0.0537 8.4579 21 1 2.5180 1.4954 7.7007 22 6 5.0089 -2.8788 6.4095 23 6 4.6427 -2.6697 7.7259 24 6 5.0601 -3.5491 8.7075 25 6 5.8503 -4.6330 8.3737 26 6 6.2210 -4.8391 7.0581 27 6 5.8005 -3.9619 6.0760 28 1 -0.3634 0.5882 0.8426 29 1 -0.3633 0.4355 -0.9308 30 1 -0.3633 -1.0240 0.0881 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.5871 -1.7109 -1.3077 35 1 1.7722 -0.1461 -2.1356 36 1 3.1241 -0.8204 -1.1943 37 1 2.5382 -0.2071 1.8571 38 1 2.0811 -3.5986 2.5569 39 1 3.3127 -1.0447 3.1934 40 1 1.2896 -2.4156 7.1540 41 1 4.0283 -1.8208 7.9871 42 1 4.7708 -3.3877 9.7354 43 1 6.1787 -5.3186 9.1410 44 1 6.8388 -5.6858 6.7974 45 1 6.0897 -4.1232 5.0480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539353603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:19 Heat of formation + Delta-G solvation = 33.915187 kcal Electronic energy + Delta-G solvation = -27301.861912 eV Core-core repulsion = 23639.631722 eV Total energy + Delta-G solvation = -3662.230190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46964 -40.37895 -39.28269 -37.59504 -35.73588 -33.91558 -32.82678 -31.80100 -31.30760 -29.08595 -28.44876 -28.09614 -26.04050 -24.54199 -23.19919 -22.93848 -21.87472 -20.94359 -20.16392 -19.25072 -18.33652 -17.38097 -17.27959 -17.00464 -16.53967 -16.29876 -16.11757 -15.74278 -15.45165 -15.21795 -14.85469 -14.75495 -14.58542 -14.09343 -14.01545 -13.80232 -13.22472 -13.15555 -13.05678 -13.02621 -12.82139 -12.61910 -12.58135 -12.50663 -12.33135 -12.24106 -11.88253 -11.84881 -11.53561 -11.33998 -11.25533 -10.76112 -10.46556 -9.63091 -9.43439 -9.17469 -8.66509 -8.37238 -8.18555 -6.40328 0.23384 0.30529 0.82553 0.93255 1.22078 1.37696 1.45899 1.51539 1.68815 2.04455 2.36341 3.06040 3.23649 3.48945 3.84037 4.00613 4.14486 4.25457 4.33033 4.35612 4.46724 4.61010 4.64389 4.72197 4.80516 4.86666 4.95575 4.96038 4.99081 5.10483 5.11870 5.14313 5.23516 5.36684 5.39135 5.54652 5.62434 5.65939 5.71947 5.82532 5.85572 5.89107 5.97624 6.24567 6.35708 6.43829 6.50055 6.74999 7.30092 7.49964 8.77944 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.003814 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.926077 B = 7340.167675 C = 8421.009645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.175 3.825 3 C -0.152 4.152 4 C -0.182 4.182 5 N -0.664 5.664 6 C 0.578 3.422 7 S -0.674 6.674 8 N -0.462 5.462 9 N -0.539 5.539 10 C 0.557 3.443 11 O -0.564 6.564 12 C 0.064 3.936 13 H 0.088 0.912 14 C -0.537 4.537 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.872 5.872 18 Si 0.939 3.061 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.257 1.257 22 C -0.046 4.046 23 C -0.069 4.069 24 C -0.160 4.160 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.127 4.127 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.405 0.595 38 H 0.447 0.553 39 H 0.429 0.571 40 H 0.259 0.741 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 8.074 -7.382 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.091 3.909 3 C -0.209 4.209 4 C -0.241 4.241 5 N -0.297 5.297 6 C 0.211 3.789 7 S -0.548 6.548 8 N -0.185 5.185 9 N -0.292 5.292 10 C 0.347 3.653 11 O -0.438 6.438 12 C 0.041 3.959 13 H 0.106 0.894 14 C -0.575 4.575 15 H 0.104 0.896 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.766 3.234 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.181 1.181 22 C -0.047 4.047 23 C -0.087 4.087 24 C -0.178 4.178 25 C -0.155 4.155 26 C -0.165 4.165 27 C -0.145 4.145 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.244 0.756 38 H 0.294 0.706 39 H 0.273 0.727 40 H 0.068 0.932 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.084 6.763 -7.831 11.124 hybrid contribution -0.430 0.987 1.542 1.881 sum 3.654 7.750 -6.289 10.628 Atomic orbital electron populations 1.22682 0.93929 1.05831 1.02183 1.20790 0.95074 0.92601 0.82386 1.22134 1.02375 0.91929 1.04510 1.22644 1.00721 1.04743 0.96039 1.45305 1.53200 1.05746 1.25457 1.21937 0.85373 0.86426 0.85121 1.93187 1.46202 1.70321 1.45078 1.44730 1.42108 1.12585 1.19066 1.45642 1.46777 1.12937 1.23797 1.21919 0.79509 0.86496 0.77397 1.90600 1.62144 1.18438 1.72645 1.17966 0.94078 0.93363 0.90489 0.89381 1.21051 1.04870 0.93915 1.37624 0.89621 1.25571 0.98559 0.96794 0.95735 1.70244 1.19732 1.19861 1.40741 0.85829 0.79146 0.80669 0.77799 1.20661 1.22483 1.18128 1.19815 0.94668 0.95198 0.95042 1.21377 0.95401 0.99115 0.92801 1.21354 1.00384 0.96673 0.99411 1.21215 0.99444 0.98123 0.96717 1.21177 1.02126 0.99857 0.93315 1.21078 0.99259 0.95452 0.98758 0.93585 0.90057 0.89259 0.90750 0.88420 0.91450 0.89131 0.89934 0.93152 0.75574 0.70590 0.72747 0.93182 0.86173 0.86206 0.84653 0.84928 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.33 8.42 71.98 0.61 -3.72 16 2 C 0.18 3.56 1.06 3.60 0.00 3.57 16 3 C -0.15 -2.04 8.59 71.98 0.62 -1.42 16 4 C -0.18 -3.90 8.22 71.98 0.59 -3.30 16 5 N -0.66 -15.70 5.06 -309.90 -1.57 -17.27 16 6 C 0.58 17.82 7.49 179.06 1.34 19.17 16 7 S -0.67 -24.20 23.61 -56.49 -1.33 -25.54 16 8 N -0.46 -15.53 6.26 -59.12 -0.37 -15.90 16 9 N -0.54 -18.04 6.15 -173.53 -1.07 -19.11 16 10 C 0.56 22.96 5.68 87.65 0.50 23.46 16 11 O -0.56 -27.48 15.04 -3.04 -0.05 -27.53 16 12 C 0.06 2.57 2.68 -13.03 -0.03 2.54 16 13 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 14 C -0.54 -22.29 7.58 25.60 0.19 -22.10 16 15 H 0.09 3.31 7.82 -2.91 -0.02 3.29 16 16 C 0.04 1.71 3.45 84.66 0.29 2.00 16 17 N -0.87 -43.63 10.11 21.45 0.22 -43.41 16 18 Si 0.94 36.81 29.54 68.60 2.03 38.83 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.30 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.05 -1.98 4.45 -19.87 -0.09 -2.06 16 23 C -0.07 -3.01 7.73 22.27 0.17 -2.84 16 24 C -0.16 -6.17 10.05 22.27 0.22 -5.94 16 25 C -0.14 -4.74 10.05 22.27 0.22 -4.51 16 26 C -0.15 -5.18 10.05 22.27 0.22 -4.96 16 27 C -0.13 -5.03 8.69 22.27 0.19 -4.83 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.69 4.60 -16.36 -0.08 2.61 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 2.54 4.74 -15.81 -0.07 2.46 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.40 8.13 6.41 -92.71 -0.59 7.53 16 38 H 0.45 16.70 7.98 -213.33 -1.70 15.00 16 39 H 0.43 11.75 6.60 -213.31 -1.41 10.34 16 40 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 41 H 0.12 5.62 4.96 -2.91 -0.01 5.60 16 42 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 43 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.45 370.05 0.13 -60.32 By element: Atomic # 1 Polarization: 57.35 SS G_CDS: -2.79 Total: 54.56 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 5.06 Total: -4.96 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -2.79 Total: -95.69 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: -24.20 SS G_CDS: -1.33 Total: -25.54 kcal Total: -60.45 0.13 -60.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539353603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.239 kcal (2) G-P(sol) polarization free energy of solvation -60.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds