Wall clock time and date at job start Tue Mar 31 2020 18:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.52998 * 109.46959 * 120.00197 * 2 1 3 5 5 H 1.09003 * 109.47428 * 299.99614 * 4 2 1 6 6 C 1.52999 * 109.47428 * 60.00069 * 4 2 1 7 7 N 1.46492 * 109.47289 * 185.00001 * 6 4 2 8 8 C 1.34776 * 120.00462 * 179.72568 * 7 6 4 9 9 O 1.21283 * 119.99384 * 0.27147 * 8 7 6 10 10 C 1.50698 * 120.00439 * 180.27514 * 8 7 6 11 11 C 1.50705 * 109.47009 * 179.97438 * 10 8 7 12 12 C 1.38323 * 119.96094 * 269.72228 * 11 10 8 13 13 C 1.38286 * 120.13434 * 179.76714 * 12 11 10 14 14 C 1.38122 * 120.06921 * 0.51053 * 13 12 11 15 15 C 1.38859 * 119.92905 * 359.74356 * 14 13 12 16 16 O 1.35749 * 120.06764 * 179.97438 * 15 14 13 17 17 C 1.34828 * 117.00413 * 354.49385 * 16 15 14 18 18 H 1.08002 * 119.99386 * 5.05210 * 17 16 15 19 19 C 1.38649 * 120.00623 * 185.04993 * 17 16 15 20 20 N 1.31564 * 119.99701 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00414 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46790 * 60.00243 * 21 19 17 23 23 H 1.48496 * 109.47242 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47140 * 300.00264 * 21 19 17 25 25 C 1.38077 * 119.96554 * 89.99708 * 11 10 8 26 26 C 1.50707 * 109.47021 * 179.97438 * 4 2 1 27 27 O 1.20818 * 119.99967 * 239.99962 * 26 4 2 28 28 O 1.34227 * 119.99836 * 59.99638 * 26 4 2 29 29 H 1.08997 * 109.47143 * 299.99701 * 1 2 3 30 30 H 1.09004 * 109.47214 * 59.99953 * 1 2 3 31 31 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46735 * 240.00235 * 2 1 3 33 33 H 1.08997 * 109.46931 * 60.00169 * 3 2 1 34 34 H 1.09006 * 109.46940 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47192 * 299.99513 * 3 2 1 36 36 H 1.09006 * 109.47008 * 64.99563 * 6 4 2 37 37 H 1.09000 * 109.46691 * 304.99961 * 6 4 2 38 38 H 0.97006 * 119.99889 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.46894 * 299.99620 * 10 8 7 40 40 H 1.08998 * 109.47281 * 60.00001 * 10 8 7 41 41 H 1.07997 * 119.93400 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.96470 * 180.25701 * 13 12 11 43 43 H 1.08001 * 120.03550 * 179.76587 * 14 13 12 44 44 H 0.97003 * 119.99793 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.03372 * 359.95974 * 25 11 10 46 46 H 0.96693 * 116.99945 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 1.5300 -2.1638 1.2492 7 7 1.9175 -2.8188 2.5009 8 6 1.5693 -4.1010 2.7266 9 8 0.9392 -4.7142 1.8911 10 6 1.9626 -4.7729 4.0169 11 6 1.4550 -6.1919 4.0194 12 6 0.2009 -6.4761 4.5290 13 6 -0.2704 -7.7761 4.5287 14 6 0.5147 -8.7967 4.0289 15 6 1.7762 -8.5153 3.5214 16 8 2.5504 -9.5163 3.0299 17 6 2.0847 -10.7741 3.1672 18 1 1.0997 -10.9435 3.5764 19 6 2.8702 -11.8501 2.7830 20 7 4.0703 -11.6437 2.2849 21 14 2.2253 -13.5928 2.9738 22 1 0.9839 -13.7514 2.1744 23 1 3.2497 -14.5550 2.4944 24 1 1.9297 -13.8573 4.4049 25 6 2.2446 -7.2077 3.5182 26 6 3.5471 -0.7218 1.2489 27 8 4.1507 -1.7684 1.2489 28 8 4.2186 0.4404 1.2486 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9646 -2.7028 0.4073 37 1 0.4437 -2.1650 1.1596 38 1 2.4217 -2.3284 3.1690 39 1 3.0487 -4.7750 4.1091 40 1 1.5277 -4.2304 4.8563 41 1 -0.4129 -5.6805 4.9249 42 1 -1.2517 -7.9943 4.9235 43 1 0.1476 -9.8124 4.0324 44 1 4.6201 -12.3965 2.0165 45 1 3.2252 -6.9856 3.1240 46 1 5.1842 0.3894 1.2488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588821599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:44 Heat of formation + Delta-G solvation = -142.128262 kcal Electronic energy + Delta-G solvation = -28174.543227 eV Core-core repulsion = 24029.633598 eV Total energy + Delta-G solvation = -4144.909629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07809 -39.63361 -38.68868 -37.26123 -36.58197 -36.33396 -34.24880 -32.32755 -31.93372 -30.03199 -29.06609 -27.91779 -27.03533 -25.23718 -24.58595 -22.30130 -21.56667 -21.09561 -20.68583 -19.85406 -18.57566 -17.61073 -17.43512 -16.99851 -16.76994 -16.38599 -15.69632 -15.39805 -14.91598 -14.61844 -14.41871 -14.32218 -14.05193 -13.87392 -13.77497 -13.42280 -13.27634 -13.07082 -12.92242 -12.61011 -12.51376 -12.33160 -12.22772 -11.99425 -11.70410 -11.42468 -11.38472 -11.21687 -11.18378 -11.17498 -10.77806 -10.74979 -10.69679 -10.53074 -10.39446 -9.65976 -9.24719 -9.05001 -8.74929 -7.96207 -7.11872 -6.35460 -3.94466 1.80767 2.19316 2.49220 2.57321 2.87998 3.17463 3.18831 3.22624 3.23172 4.02964 4.04220 4.22167 4.40850 4.63960 4.74923 4.81058 4.86877 4.99853 5.09232 5.16249 5.19666 5.24386 5.33158 5.40094 5.45136 5.52110 5.60355 5.62263 5.70609 5.75553 5.84084 5.85767 5.96414 6.02877 6.11814 6.27400 6.38236 6.44454 6.75915 7.02152 7.16258 7.37283 7.45749 7.49336 7.51369 7.54188 7.93119 8.09663 8.40114 9.10050 9.82135 10.82867 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002116 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.457431 B =13227.871772 C =13809.760130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 C -0.158 4.158 4 C -0.088 4.088 5 H 0.115 0.885 6 C 0.131 3.869 7 N -0.734 5.734 8 C 0.517 3.483 9 O -0.519 6.519 10 C -0.094 4.094 11 C -0.032 4.032 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.270 1.270 25 C -0.174 4.174 26 C 0.475 3.525 27 O -0.496 6.496 28 O -0.511 6.511 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.395 0.605 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.114 0.886 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 27.964 0.099 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 C -0.215 4.215 4 C -0.108 4.108 5 H 0.133 0.867 6 C 0.007 3.993 7 N -0.387 5.387 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.133 4.133 11 C -0.033 4.033 12 C -0.216 4.216 13 C -0.094 4.094 14 C -0.251 4.251 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.193 4.193 26 C 0.316 3.684 27 O -0.382 6.382 28 O -0.324 6.324 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.229 0.771 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.298 27.061 -0.741 27.411 hybrid contribution 0.583 -0.645 0.402 0.958 sum -3.715 26.416 -0.339 26.678 Atomic orbital electron populations 1.21955 0.93601 1.02831 1.02582 1.21037 0.96992 0.96799 0.95574 1.22105 1.03037 0.94386 1.01987 1.21520 0.87605 0.98736 1.02895 0.86667 1.21289 1.00471 0.88978 0.88518 1.45887 1.59177 1.13552 1.20111 1.20692 0.79076 0.80744 0.89113 1.90756 1.38601 1.63428 1.46522 1.20581 1.02973 0.94425 0.95358 1.18658 0.94368 0.91759 0.98466 1.20338 0.96345 0.96181 1.08706 1.20669 0.98084 0.92671 0.97934 1.21163 0.95907 0.99995 1.07996 1.19279 0.90111 0.89304 0.91168 1.83979 1.42965 1.13964 1.67453 1.21265 1.01929 0.79410 1.44063 0.89201 1.25274 0.95280 0.99523 0.96526 1.70042 1.08697 1.32091 1.39212 0.85791 0.78441 0.80288 0.78941 1.19551 1.20351 1.19565 1.19964 1.01013 0.90433 1.07896 1.23421 0.91542 0.81156 0.72292 1.90831 1.70253 1.32967 1.44116 1.84629 1.26612 1.35697 1.85465 0.92101 0.91808 0.91633 0.90207 0.92375 0.90262 0.92389 0.90528 0.89578 0.77112 0.88261 0.88484 0.87970 0.87518 0.85655 0.92094 0.86830 0.73442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.85 37.16 0.33 -0.45 16 2 C -0.08 -0.48 2.50 -90.62 -0.23 -0.70 16 3 C -0.16 -0.76 8.68 37.16 0.32 -0.44 16 4 C -0.09 -0.58 1.96 -91.77 -0.18 -0.76 16 5 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 6 C 0.13 1.31 4.41 -4.05 -0.02 1.29 16 7 N -0.73 -8.19 4.81 -60.30 -0.29 -8.48 16 8 C 0.52 7.97 7.82 -10.99 -0.09 7.89 16 9 O -0.52 -10.54 16.03 5.56 0.09 -10.45 16 10 C -0.09 -1.34 5.83 -29.03 -0.17 -1.50 16 11 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 12 C -0.20 -3.69 9.70 -39.53 -0.38 -4.07 16 13 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 14 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 15 C 0.15 4.02 6.65 -39.11 -0.26 3.76 16 16 O -0.18 -5.43 9.76 0.06 0.00 -5.43 16 17 C -0.39 -11.41 9.49 30.88 0.29 -11.12 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.87 -26.34 13.67 55.48 0.76 -25.58 16 21 Si 0.94 21.30 29.55 -169.99 -5.02 16.28 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.17 -4.01 9.65 -39.39 -0.38 -4.39 16 26 C 0.47 3.79 7.23 36.01 0.26 4.05 16 27 O -0.50 -6.02 16.05 -18.74 -0.30 -6.32 16 28 O -0.51 -2.63 10.34 -39.25 -0.41 -3.04 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.42 5.32 -51.93 -0.28 0.14 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 37 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 38 H 0.40 3.35 8.16 -40.82 -0.33 3.02 16 39 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 46 H 0.41 0.78 9.10 45.56 0.41 1.19 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -38.25 384.72 -6.79 -45.04 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.61 Total: 6.39 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.81 Total: -14.20 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.47 Total: -34.06 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.62 Total: -25.23 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.25 -6.79 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588821599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.091 kcal (2) G-P(sol) polarization free energy of solvation -38.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds