Wall clock time and date at job start Tue Mar 31 2020 18:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.52998 * 109.46959 * 120.00197 * 2 1 3 5 5 H 1.09003 * 109.47428 * 299.99614 * 4 2 1 6 6 C 1.52999 * 109.47428 * 60.00069 * 4 2 1 7 7 N 1.46492 * 109.47289 * 185.00001 * 6 4 2 8 8 C 1.34776 * 120.00462 * 179.72568 * 7 6 4 9 9 O 1.21283 * 119.99384 * 0.27147 * 8 7 6 10 10 C 1.50698 * 120.00439 * 180.27514 * 8 7 6 11 11 C 1.50705 * 109.47009 * 179.97438 * 10 8 7 12 12 C 1.38323 * 119.96094 * 269.72228 * 11 10 8 13 13 C 1.38286 * 120.13434 * 179.76714 * 12 11 10 14 14 C 1.38122 * 120.06921 * 0.51053 * 13 12 11 15 15 C 1.38859 * 119.92905 * 359.74356 * 14 13 12 16 16 O 1.35749 * 120.06764 * 179.97438 * 15 14 13 17 17 C 1.34828 * 117.00413 * 354.49385 * 16 15 14 18 18 H 1.08002 * 119.99386 * 5.05210 * 17 16 15 19 19 C 1.38649 * 120.00623 * 185.04993 * 17 16 15 20 20 N 1.31564 * 119.99701 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00414 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46790 * 60.00243 * 21 19 17 23 23 H 1.48496 * 109.47242 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47140 * 300.00264 * 21 19 17 25 25 C 1.38077 * 119.96554 * 89.99708 * 11 10 8 26 26 C 1.50707 * 109.47021 * 179.97438 * 4 2 1 27 27 O 1.20818 * 119.99967 * 239.99962 * 26 4 2 28 28 O 1.34227 * 119.99836 * 59.99638 * 26 4 2 29 29 H 1.08997 * 109.47143 * 299.99701 * 1 2 3 30 30 H 1.09004 * 109.47214 * 59.99953 * 1 2 3 31 31 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46735 * 240.00235 * 2 1 3 33 33 H 1.08997 * 109.46931 * 60.00169 * 3 2 1 34 34 H 1.09006 * 109.46940 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47192 * 299.99513 * 3 2 1 36 36 H 1.09006 * 109.47008 * 64.99563 * 6 4 2 37 37 H 1.09000 * 109.46691 * 304.99961 * 6 4 2 38 38 H 0.97006 * 119.99889 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.46894 * 299.99620 * 10 8 7 40 40 H 1.08998 * 109.47281 * 60.00001 * 10 8 7 41 41 H 1.07997 * 119.93400 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.96470 * 180.25701 * 13 12 11 43 43 H 1.08001 * 120.03550 * 179.76587 * 14 13 12 44 44 H 0.97003 * 119.99793 * 179.97438 * 20 19 17 45 45 H 1.07995 * 120.03372 * 359.95974 * 25 11 10 46 46 H 0.96693 * 116.99945 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 1.5300 -2.1638 1.2492 7 7 1.9175 -2.8188 2.5009 8 6 1.5693 -4.1010 2.7266 9 8 0.9392 -4.7142 1.8911 10 6 1.9626 -4.7729 4.0169 11 6 1.4550 -6.1919 4.0194 12 6 0.2009 -6.4761 4.5290 13 6 -0.2704 -7.7761 4.5287 14 6 0.5147 -8.7967 4.0289 15 6 1.7762 -8.5153 3.5214 16 8 2.5504 -9.5163 3.0299 17 6 2.0847 -10.7741 3.1672 18 1 1.0997 -10.9435 3.5764 19 6 2.8702 -11.8501 2.7830 20 7 4.0703 -11.6437 2.2849 21 14 2.2253 -13.5928 2.9738 22 1 0.9839 -13.7514 2.1744 23 1 3.2497 -14.5550 2.4944 24 1 1.9297 -13.8573 4.4049 25 6 2.2446 -7.2077 3.5182 26 6 3.5471 -0.7218 1.2489 27 8 4.1507 -1.7684 1.2489 28 8 4.2186 0.4404 1.2486 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9646 -2.7028 0.4073 37 1 0.4437 -2.1650 1.1596 38 1 2.4217 -2.3284 3.1690 39 1 3.0487 -4.7750 4.1091 40 1 1.5277 -4.2304 4.8563 41 1 -0.4129 -5.6805 4.9249 42 1 -1.2517 -7.9943 4.9235 43 1 0.1476 -9.8124 4.0324 44 1 4.6201 -12.3965 2.0165 45 1 3.2252 -6.9856 3.1240 46 1 5.1842 0.3894 1.2488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588821599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:43 Heat of formation + Delta-G solvation = -170.131558 kcal Electronic energy + Delta-G solvation = -28175.757541 eV Core-core repulsion = 24029.633598 eV Total energy + Delta-G solvation = -4146.123943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.77598 -41.01863 -40.29627 -38.30419 -37.74342 -37.19392 -35.22399 -34.34557 -33.47694 -31.06351 -30.62347 -28.59295 -28.15543 -27.25647 -25.47058 -23.32000 -23.01640 -22.45981 -21.68473 -20.76335 -19.50496 -19.17976 -18.80384 -18.08989 -17.90712 -17.27747 -16.82788 -16.59176 -16.52005 -16.09444 -15.95114 -15.52790 -15.15981 -15.03720 -14.87669 -14.58113 -14.41562 -14.30742 -13.99445 -13.78096 -13.60623 -13.51206 -13.02112 -12.95360 -12.87690 -12.72067 -12.60547 -12.45837 -12.39608 -12.21838 -12.13136 -11.93528 -11.66238 -11.64260 -11.43711 -11.21048 -10.95729 -10.78957 -10.08681 -9.63835 -8.97716 -8.47042 -6.16087 0.52090 0.76219 1.17765 1.33068 1.45077 1.50409 1.67788 2.05793 2.17277 2.20183 2.84987 3.17938 3.39117 3.44174 3.69980 3.80776 3.93121 4.10382 4.13563 4.20596 4.31926 4.35033 4.36544 4.43396 4.58272 4.60246 4.63485 4.68865 4.73880 4.81128 4.90364 5.05625 5.07722 5.12527 5.14737 5.25609 5.30489 5.39783 5.45471 5.58451 5.63687 5.65435 5.73020 5.75642 6.02555 6.23987 6.52801 6.96954 6.99526 7.28796 7.79318 8.76568 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002116 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.457431 B =13227.871772 C =13809.760130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.078 4.078 5 H 0.147 0.853 6 C 0.129 3.871 7 N -0.713 5.713 8 C 0.516 3.484 9 O -0.578 6.578 10 C -0.092 4.092 11 C -0.025 4.025 12 C -0.178 4.178 13 C -0.072 4.072 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.236 6.236 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.027 4.027 20 N -0.924 5.924 21 Si 1.022 2.978 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.196 4.196 26 C 0.482 3.518 27 O -0.545 6.545 28 O -0.499 6.499 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.412 0.588 39 H 0.113 0.887 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.119 0.881 44 H 0.272 0.728 45 H 0.100 0.900 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 31.021 2.157 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 C -0.211 4.211 4 C -0.098 4.098 5 H 0.165 0.835 6 C 0.006 3.994 7 N -0.366 5.366 8 C 0.303 3.697 9 O -0.457 6.457 10 C -0.131 4.131 11 C -0.026 4.026 12 C -0.196 4.196 13 C -0.090 4.090 14 C -0.266 4.266 15 C 0.061 3.939 16 O -0.143 6.143 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.224 4.224 20 N -0.562 5.562 21 Si 0.841 3.159 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.216 4.216 26 C 0.326 3.674 27 O -0.435 6.435 28 O -0.312 6.312 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.248 0.752 39 H 0.131 0.869 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -6.592 30.247 1.355 30.987 hybrid contribution 1.225 -1.186 -0.190 1.716 sum -5.367 29.061 1.165 29.575 Atomic orbital electron populations 1.21946 0.92954 1.02310 1.03605 1.21025 0.97458 0.97210 0.94435 1.22069 1.02699 0.93519 1.02813 1.21501 0.86802 0.96664 1.04783 0.83548 1.21336 1.00798 0.90534 0.86753 1.45716 1.57805 1.12374 1.20702 1.20859 0.78420 0.81626 0.88797 1.90746 1.41699 1.64957 1.48333 1.20696 1.04166 0.91570 0.96647 1.19190 0.94121 0.93391 0.95898 1.20988 0.95909 0.96939 1.05813 1.21159 0.99182 0.92268 0.96418 1.21301 0.95511 1.00997 1.08745 1.19877 0.91415 0.89622 0.92983 1.83940 1.45071 1.14954 1.70355 1.21812 1.02767 0.79899 1.44619 0.88128 1.26672 0.95402 1.04534 0.95744 1.70204 1.10669 1.33731 1.41637 0.84611 0.78113 0.73442 0.79768 1.18243 1.19502 1.17872 1.20215 1.01506 0.90696 1.09159 1.23617 0.92034 0.80935 0.70848 1.90831 1.71270 1.34717 1.46675 1.84593 1.28062 1.34012 1.84544 0.90675 0.91251 0.92880 0.91612 0.91250 0.90724 0.91910 0.93851 0.88884 0.75154 0.86896 0.83391 0.83108 0.83404 0.86322 0.91866 0.88220 0.71596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.85 71.98 0.64 -0.60 16 2 C -0.08 -0.78 2.50 -10.79 -0.03 -0.80 16 3 C -0.15 -1.07 8.68 71.98 0.62 -0.45 16 4 C -0.08 -0.87 1.96 -11.54 -0.02 -0.89 16 5 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 6 C 0.13 2.46 4.41 86.38 0.38 2.84 16 7 N -0.71 -14.55 4.81 -463.07 -2.23 -16.78 16 8 C 0.52 15.10 7.82 87.66 0.69 15.78 16 9 O -0.58 -23.51 16.03 -3.04 -0.05 -23.56 16 10 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 11 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 12 C -0.18 -6.02 9.70 22.30 0.22 -5.80 16 13 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 14 C -0.25 -11.71 9.17 22.39 0.21 -11.50 16 15 C 0.11 6.09 6.65 22.58 0.15 6.24 16 16 O -0.24 -15.37 9.76 -22.71 -0.22 -15.59 16 17 C -0.41 -25.71 9.49 67.92 0.64 -25.06 16 18 H 0.10 5.71 5.20 -2.91 -0.02 5.70 16 19 C -0.03 -1.60 5.49 84.83 0.47 -1.13 16 20 N -0.92 -59.64 13.67 21.61 0.30 -59.35 16 21 Si 1.02 44.98 29.55 68.60 2.03 47.01 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 25 C -0.20 -9.43 9.65 22.39 0.22 -9.22 16 26 C 0.48 6.94 7.23 71.24 0.51 7.45 16 27 O -0.54 -13.06 16.05 21.99 0.35 -12.71 16 28 O -0.50 -3.94 10.34 -51.39 -0.53 -4.47 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.05 0.57 6.32 -2.39 -0.02 0.56 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.60 5.32 -2.38 -0.01 0.59 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.04 1.13 7.95 -2.38 -0.02 1.12 16 37 H 0.09 1.67 6.17 -2.39 -0.01 1.66 16 38 H 0.41 5.71 8.16 -92.70 -0.76 4.96 16 39 H 0.11 2.64 8.08 -2.39 -0.02 2.63 16 40 H 0.15 2.31 8.08 -2.39 -0.02 2.29 16 41 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 44 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 45 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.42 0.72 9.10 -74.06 -0.67 0.04 16 Total: -1.00 -92.45 384.72 4.25 -88.21 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.40 Total: 26.06 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 5.00 Total: -28.82 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.93 Total: -76.12 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.45 Total: -56.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -92.45 4.25 -88.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588821599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.926 kcal (2) G-P(sol) polarization free energy of solvation -92.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds