Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46872 * 2 1 4 4 C 1.52994 * 109.47203 * 239.99665 * 2 1 3 5 5 C 1.52999 * 109.47074 * 119.99670 * 2 1 3 6 6 C 1.53003 * 109.47012 * 66.07283 * 5 2 1 7 7 H 1.08995 * 109.46950 * 53.75210 * 6 5 2 8 8 N 1.46502 * 109.47029 * 293.75086 * 6 5 2 9 9 C 1.34777 * 119.99506 * 154.99991 * 8 6 5 10 10 O 1.21594 * 120.00444 * 0.02562 * 9 8 6 11 11 C 1.47531 * 120.00040 * 180.02562 * 9 8 6 12 12 C 1.39674 * 120.19564 * 359.97438 * 11 9 8 13 13 C 1.37822 * 119.91922 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32591 * 0.02562 * 13 12 11 15 15 C 1.38026 * 120.39967 * 0.02562 * 14 13 12 16 16 C 1.38839 * 120.07364 * 359.68291 * 15 14 13 17 17 O 1.35514 * 120.16376 * 180.29843 * 16 15 14 18 18 C 1.34818 * 116.99916 * 354.15260 * 17 16 15 19 19 H 1.07998 * 120.00318 * 5.14017 * 18 17 16 20 20 C 1.38700 * 119.99686 * 185.13857 * 18 17 16 21 21 N 1.31511 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99495 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47539 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47058 * 120.00364 * 22 20 18 25 25 H 1.48504 * 109.47036 * 239.99686 * 22 20 18 26 26 C 1.50704 * 109.46827 * 173.75253 * 6 5 2 27 27 O 1.20823 * 119.99661 * 120.00322 * 26 6 5 28 28 O 1.34227 * 120.00088 * 300.00036 * 26 6 5 29 29 H 1.09005 * 109.47576 * 290.67017 * 1 2 3 30 30 H 1.09003 * 109.47105 * 50.66975 * 1 2 3 31 31 H 1.09004 * 109.46990 * 170.67066 * 1 2 3 32 32 H 1.09000 * 109.47061 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46886 * 300.00021 * 3 2 1 34 34 H 1.09000 * 109.47292 * 59.99920 * 3 2 1 35 35 H 1.08997 * 109.47498 * 299.99946 * 4 2 1 36 36 H 1.09005 * 109.47420 * 60.00187 * 4 2 1 37 37 H 1.09000 * 109.47027 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.47301 * 306.07454 * 5 2 1 39 39 H 1.08996 * 109.47286 * 186.07824 * 5 2 1 40 40 H 0.96997 * 120.00175 * 335.00390 * 8 6 5 41 41 H 1.08001 * 120.03891 * 0.02935 * 12 11 9 42 42 H 1.08000 * 119.84202 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.80036 * 180.02562 * 14 13 12 44 44 H 1.08009 * 119.96552 * 179.97438 * 15 14 13 45 45 H 0.97005 * 119.99965 * 179.97438 * 21 20 18 46 46 H 0.96698 * 116.99589 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.6584 -2.2010 1.1754 7 1 2.0136 -2.6212 0.2345 8 7 0.2013 -2.3339 1.2504 9 6 -0.4049 -3.4145 0.7201 10 8 0.2574 -4.2793 0.1798 11 6 -1.8722 -3.5482 0.7951 12 6 -2.6371 -2.5576 1.4153 13 6 -4.0074 -2.6885 1.4826 14 6 -4.6317 -3.7994 0.9382 15 6 -3.8888 -4.7868 0.3232 16 6 -2.5079 -4.6689 0.2407 17 8 -1.7772 -5.6344 -0.3680 18 6 -2.4361 -6.7412 -0.7659 19 1 -3.5105 -6.7939 -0.6701 20 6 -1.7340 -7.8124 -1.2982 21 7 -0.4256 -7.7485 -1.4144 22 14 -2.6470 -9.3458 -1.8502 23 1 -4.1022 -9.1673 -1.6143 24 1 -2.4038 -9.5726 -3.2974 25 1 -2.1606 -10.5167 -1.0771 26 6 2.2902 -2.9407 2.3263 27 8 1.5948 -3.5196 3.1270 28 8 3.6256 -2.9566 2.4619 29 1 -0.3634 0.3628 0.9615 30 1 -0.3633 0.6513 -0.7949 31 1 -0.3633 -1.0141 -0.1666 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2493 38 1 1.5906 -0.2739 2.1360 39 1 3.1245 -0.6279 1.3054 40 1 -0.3270 -1.6442 1.6817 41 1 -2.1553 -1.6901 1.8415 42 1 -4.5976 -1.9220 1.9628 43 1 -5.7062 -3.8932 0.9954 44 1 -4.3826 -5.6499 -0.0984 45 1 0.0655 -8.4979 -1.7864 46 1 3.9845 -3.4445 3.2156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589751286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = -126.236424 kcal Electronic energy + Delta-G solvation = -30300.946228 eV Core-core repulsion = 26156.725721 eV Total energy + Delta-G solvation = -4144.220507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68820 -39.42664 -38.52276 -37.38919 -36.33548 -35.92540 -33.85007 -32.33544 -31.16311 -29.38739 -28.90566 -27.37770 -27.23006 -25.40803 -24.90481 -23.24739 -21.69018 -20.87222 -19.97257 -19.04368 -18.02549 -17.98497 -17.47331 -16.79935 -16.23296 -15.77020 -15.37225 -14.65882 -14.60210 -14.54164 -14.23763 -14.17220 -14.10591 -13.80638 -13.72892 -13.17661 -12.92603 -12.77051 -12.67833 -12.49144 -12.12940 -11.98152 -11.71490 -11.69323 -11.53531 -11.36552 -11.30500 -11.12158 -10.95300 -10.91179 -10.78365 -10.75733 -10.56862 -10.43762 -10.30837 -9.58276 -8.94986 -8.87540 -8.64211 -8.27453 -7.30564 -6.44072 -4.03738 1.70323 2.32738 2.38525 2.93872 3.11995 3.13449 3.18865 3.59338 3.81132 3.94035 4.49931 4.60589 4.65357 4.71469 5.06095 5.07425 5.18143 5.18379 5.30317 5.40734 5.50036 5.52508 5.54410 5.59082 5.68204 5.71123 5.75546 5.81685 5.85717 5.98357 6.02750 6.06116 6.12235 6.17808 6.34601 6.41056 6.56362 6.62169 6.66849 6.73760 6.91374 7.06594 7.23807 7.29689 7.69733 7.89910 8.01206 8.04744 8.95242 9.01222 9.67940 10.69822 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003951 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.350914 B = 7085.953385 C = 8013.670730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.151 4.151 5 C -0.111 4.111 6 C 0.160 3.840 7 H 0.132 0.868 8 N -0.719 5.719 9 C 0.560 3.440 10 O -0.496 6.496 11 C -0.225 4.225 12 C -0.036 4.036 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.190 3.810 17 O -0.124 6.124 18 C -0.403 4.403 19 H 0.095 0.905 20 C 0.045 3.955 21 N -0.832 5.832 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.461 3.539 27 O -0.499 6.499 28 O -0.520 6.520 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.400 0.600 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.271 0.729 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 16.328 4.453 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.208 4.208 5 C -0.149 4.149 6 C 0.052 3.948 7 H 0.149 0.851 8 N -0.377 5.377 9 C 0.351 3.649 10 O -0.370 6.370 11 C -0.230 4.230 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.068 4.068 15 C -0.256 4.256 16 C 0.131 3.869 17 O -0.022 6.022 18 C -0.479 4.479 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.300 3.700 27 O -0.385 6.385 28 O -0.331 6.331 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.237 0.763 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.958 15.506 3.763 16.440 hybrid contribution -0.580 -0.838 0.652 1.210 sum 3.378 14.668 4.415 15.686 Atomic orbital electron populations 1.22332 0.94201 1.03959 1.01327 1.20483 0.96260 0.95125 0.94548 1.21865 1.00862 0.95154 1.01770 1.22019 1.00928 1.01162 0.96720 1.21934 1.02692 0.91247 0.98987 1.20437 0.82458 0.95676 0.96182 0.85094 1.45992 1.04526 1.25139 1.62048 1.18265 0.87971 0.80665 0.78009 1.90953 1.65626 1.38487 1.41898 1.18726 0.91612 0.98966 1.13658 1.20742 0.93888 0.95728 0.95155 1.20450 0.94177 1.00540 1.09703 1.20899 0.98616 0.92918 0.94416 1.21159 0.93473 1.02340 1.08662 1.19256 0.89925 0.88863 0.88895 1.84166 1.34762 1.23195 1.60056 1.21547 0.92588 0.91538 1.42215 0.88809 1.25382 0.95722 0.98616 0.96584 1.70135 1.06020 1.31273 1.38921 0.85664 0.79188 0.80086 0.78569 1.18954 1.20009 1.20032 1.24388 0.80133 0.78791 0.86688 1.90737 1.63322 1.41425 1.43035 1.84518 1.24291 1.71402 1.52902 0.92934 0.92740 0.90159 0.92645 0.92468 0.92741 0.91560 0.92428 0.92466 0.90848 0.89114 0.76260 0.87168 0.87246 0.87172 0.85062 0.91938 0.73617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 7.04 37.16 0.26 -1.40 16 2 C -0.06 -0.61 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.07 8.46 37.16 0.31 -0.76 16 4 C -0.15 -1.65 7.95 37.15 0.30 -1.35 16 5 C -0.11 -1.10 3.94 -26.73 -0.11 -1.20 16 6 C 0.16 2.30 2.13 -69.08 -0.15 2.15 16 7 H 0.13 2.09 5.41 -51.93 -0.28 1.81 16 8 N -0.72 -11.55 2.29 -55.97 -0.13 -11.68 16 9 C 0.56 12.26 7.15 -12.47 -0.09 12.17 16 10 O -0.50 -13.45 14.83 -16.57 -0.25 -13.70 16 11 C -0.22 -4.91 5.89 -104.81 -0.62 -5.52 16 12 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 13 C -0.23 -3.77 10.02 -39.61 -0.40 -4.17 16 14 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 15 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 16 C 0.19 4.76 6.66 -38.60 -0.26 4.50 16 17 O -0.12 -3.67 7.84 -21.05 -0.16 -3.83 16 18 C -0.40 -11.48 9.49 30.90 0.29 -11.19 16 19 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.23 13.67 55.48 0.76 -24.47 16 22 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.46 7.29 7.66 36.01 0.28 7.57 16 27 O -0.50 -9.90 17.08 -18.75 -0.32 -10.22 16 28 O -0.52 -6.29 13.21 -39.25 -0.52 -6.81 16 29 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 30 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.08 1.04 5.42 -51.93 -0.28 0.76 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 40 H 0.40 5.30 5.02 -40.82 -0.21 5.10 16 41 H 0.11 1.47 6.40 -52.49 -0.34 1.14 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.41 3.32 9.10 45.56 0.41 3.73 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -37.12 376.68 -6.82 -43.94 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.33 Total: 11.95 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.52 Total: -6.54 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.63 Total: -36.15 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.25 Total: -34.55 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.12 -6.82 -43.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589751286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.297 kcal (2) G-P(sol) polarization free energy of solvation -37.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds