Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46872 * 2 1 4 4 C 1.52994 * 109.47203 * 239.99665 * 2 1 3 5 5 C 1.52999 * 109.47074 * 119.99670 * 2 1 3 6 6 C 1.53003 * 109.47012 * 66.07283 * 5 2 1 7 7 H 1.08995 * 109.46950 * 53.75210 * 6 5 2 8 8 N 1.46502 * 109.47029 * 293.75086 * 6 5 2 9 9 C 1.34777 * 119.99506 * 154.99991 * 8 6 5 10 10 O 1.21594 * 120.00444 * 0.02562 * 9 8 6 11 11 C 1.47531 * 120.00040 * 180.02562 * 9 8 6 12 12 C 1.39674 * 120.19564 * 359.97438 * 11 9 8 13 13 C 1.37822 * 119.91922 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32591 * 0.02562 * 13 12 11 15 15 C 1.38026 * 120.39967 * 0.02562 * 14 13 12 16 16 C 1.38839 * 120.07364 * 359.68291 * 15 14 13 17 17 O 1.35514 * 120.16376 * 180.29843 * 16 15 14 18 18 C 1.34818 * 116.99916 * 354.15260 * 17 16 15 19 19 H 1.07998 * 120.00318 * 5.14017 * 18 17 16 20 20 C 1.38700 * 119.99686 * 185.13857 * 18 17 16 21 21 N 1.31511 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99495 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47539 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47058 * 120.00364 * 22 20 18 25 25 H 1.48504 * 109.47036 * 239.99686 * 22 20 18 26 26 C 1.50704 * 109.46827 * 173.75253 * 6 5 2 27 27 O 1.20823 * 119.99661 * 120.00322 * 26 6 5 28 28 O 1.34227 * 120.00088 * 300.00036 * 26 6 5 29 29 H 1.09005 * 109.47576 * 290.67017 * 1 2 3 30 30 H 1.09003 * 109.47105 * 50.66975 * 1 2 3 31 31 H 1.09004 * 109.46990 * 170.67066 * 1 2 3 32 32 H 1.09000 * 109.47061 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46886 * 300.00021 * 3 2 1 34 34 H 1.09000 * 109.47292 * 59.99920 * 3 2 1 35 35 H 1.08997 * 109.47498 * 299.99946 * 4 2 1 36 36 H 1.09005 * 109.47420 * 60.00187 * 4 2 1 37 37 H 1.09000 * 109.47027 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.47301 * 306.07454 * 5 2 1 39 39 H 1.08996 * 109.47286 * 186.07824 * 5 2 1 40 40 H 0.96997 * 120.00175 * 335.00390 * 8 6 5 41 41 H 1.08001 * 120.03891 * 0.02935 * 12 11 9 42 42 H 1.08000 * 119.84202 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.80036 * 180.02562 * 14 13 12 44 44 H 1.08009 * 119.96552 * 179.97438 * 15 14 13 45 45 H 0.97005 * 119.99965 * 179.97438 * 21 20 18 46 46 H 0.96698 * 116.99589 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.6584 -2.2010 1.1754 7 1 2.0136 -2.6212 0.2345 8 7 0.2013 -2.3339 1.2504 9 6 -0.4049 -3.4145 0.7201 10 8 0.2574 -4.2793 0.1798 11 6 -1.8722 -3.5482 0.7951 12 6 -2.6371 -2.5576 1.4153 13 6 -4.0074 -2.6885 1.4826 14 6 -4.6317 -3.7994 0.9382 15 6 -3.8888 -4.7868 0.3232 16 6 -2.5079 -4.6689 0.2407 17 8 -1.7772 -5.6344 -0.3680 18 6 -2.4361 -6.7412 -0.7659 19 1 -3.5105 -6.7939 -0.6701 20 6 -1.7340 -7.8124 -1.2982 21 7 -0.4256 -7.7485 -1.4144 22 14 -2.6470 -9.3458 -1.8502 23 1 -4.1022 -9.1673 -1.6143 24 1 -2.4038 -9.5726 -3.2974 25 1 -2.1606 -10.5167 -1.0771 26 6 2.2902 -2.9407 2.3263 27 8 1.5948 -3.5196 3.1270 28 8 3.6256 -2.9566 2.4619 29 1 -0.3634 0.3628 0.9615 30 1 -0.3633 0.6513 -0.7949 31 1 -0.3633 -1.0141 -0.1666 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2493 38 1 1.5906 -0.2739 2.1360 39 1 3.1245 -0.6279 1.3054 40 1 -0.3270 -1.6442 1.6817 41 1 -2.1553 -1.6901 1.8415 42 1 -4.5976 -1.9220 1.9628 43 1 -5.7062 -3.8932 0.9954 44 1 -4.3826 -5.6499 -0.0984 45 1 0.0655 -8.4979 -1.7864 46 1 3.9845 -3.4445 3.2156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589751286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = -152.127775 kcal Electronic energy + Delta-G solvation = -30302.068962 eV Core-core repulsion = 26156.725721 eV Total energy + Delta-G solvation = -4145.343241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01888 -41.01533 -39.92867 -38.69297 -38.02939 -37.17348 -35.23912 -34.33096 -32.61595 -30.70001 -30.55107 -28.21308 -27.98555 -27.38413 -25.96922 -24.79414 -23.29229 -22.23908 -21.50094 -20.04786 -19.82647 -19.30689 -18.94469 -18.06565 -17.87017 -17.19180 -16.61746 -16.34834 -16.02763 -15.89410 -15.79205 -15.49476 -15.35871 -15.15037 -15.01035 -14.69425 -14.39088 -14.23467 -13.95316 -13.61771 -13.55531 -13.10585 -13.00768 -12.78574 -12.68574 -12.59020 -12.55737 -12.48274 -12.39311 -12.33108 -12.10790 -12.02456 -11.56610 -11.49597 -11.42023 -11.38228 -10.85390 -10.69472 -10.11446 -9.81184 -9.04349 -8.45697 -6.16435 0.10473 0.72246 1.10753 1.30962 1.41756 1.50925 1.68681 2.12462 2.14670 2.39022 2.87742 3.22132 3.46091 3.52960 3.76350 3.90355 3.97080 4.06326 4.12204 4.25535 4.30132 4.32452 4.51385 4.61468 4.64871 4.74213 4.81345 4.86622 4.96419 4.96873 4.99509 5.06765 5.12313 5.14551 5.16707 5.26150 5.34221 5.43975 5.47207 5.49228 5.54780 5.59576 5.61103 5.69041 5.94982 6.16305 6.55924 6.90208 6.93798 7.39892 7.79588 8.75082 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003951 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.350914 B = 7085.953385 C = 8013.670730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.060 4.060 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.099 4.099 6 C 0.155 3.845 7 H 0.110 0.890 8 N -0.693 5.693 9 C 0.557 3.443 10 O -0.563 6.563 11 C -0.244 4.244 12 C -0.030 4.030 13 C -0.199 4.199 14 C -0.039 4.039 15 C -0.257 4.257 16 C 0.149 3.851 17 O -0.188 6.188 18 C -0.427 4.427 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.905 5.905 22 Si 1.022 2.978 23 H -0.245 1.245 24 H -0.267 1.267 25 H -0.271 1.271 26 C 0.464 3.536 27 O -0.546 6.546 28 O -0.505 6.505 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.416 0.584 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.270 0.730 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 20.330 6.562 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.061 4.061 3 C -0.190 4.190 4 C -0.209 4.209 5 C -0.137 4.137 6 C 0.048 3.952 7 H 0.127 0.873 8 N -0.350 5.350 9 C 0.348 3.652 10 O -0.441 6.441 11 C -0.248 4.248 12 C -0.048 4.048 13 C -0.217 4.217 14 C -0.057 4.057 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.091 6.091 18 C -0.503 4.503 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.840 3.160 23 H -0.168 1.168 24 H -0.192 1.192 25 H -0.196 1.196 26 C 0.305 3.695 27 O -0.436 6.436 28 O -0.317 6.317 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.257 0.743 41 H 0.174 0.826 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.079 0.921 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.880 19.625 5.930 20.588 hybrid contribution -0.017 -1.654 0.206 1.667 sum 1.863 17.971 6.135 19.081 Atomic orbital electron populations 1.22330 0.94694 1.02096 1.02908 1.20477 0.95902 0.96390 0.93285 1.21805 1.01431 0.93104 1.02675 1.22022 1.01661 0.99134 0.98069 1.22000 1.04059 0.87483 1.00157 1.20690 0.81081 0.98723 0.94744 0.87292 1.45663 1.05617 1.23434 1.60267 1.18500 0.88284 0.81005 0.77438 1.90929 1.66928 1.41271 1.44995 1.19229 0.92299 0.99395 1.13898 1.21275 0.94544 0.95532 0.93442 1.21171 0.93954 1.00325 1.06261 1.21439 1.00670 0.91635 0.91967 1.21303 0.92419 1.03813 1.10124 1.20078 0.91718 0.89182 0.89609 1.84174 1.36406 1.24741 1.63779 1.22081 0.93359 0.92241 1.42618 0.87593 1.26752 0.96592 1.02260 0.96525 1.70329 1.08409 1.32743 1.42614 0.84508 0.78513 0.74820 0.78130 1.16802 1.19186 1.19573 1.24575 0.80927 0.77812 0.86142 1.90721 1.64523 1.43424 1.44933 1.84464 1.22250 1.71199 1.53807 0.90463 0.92216 0.93435 0.91783 0.92262 0.91159 0.95374 0.92185 0.91337 0.88420 0.87259 0.74342 0.82565 0.81701 0.82769 0.85926 0.92095 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 7.04 71.98 0.51 -2.46 16 2 C -0.06 -1.02 0.80 -52.18 -0.04 -1.07 16 3 C -0.13 -1.54 8.46 71.98 0.61 -0.93 16 4 C -0.15 -3.32 7.95 71.98 0.57 -2.75 16 5 C -0.10 -1.72 3.94 30.60 0.12 -1.60 16 6 C 0.16 4.48 2.13 44.25 0.09 4.58 16 7 H 0.11 3.75 5.41 -2.39 -0.01 3.74 16 8 N -0.69 -22.30 2.29 -449.26 -1.03 -23.33 16 9 C 0.56 25.71 7.15 86.69 0.62 26.33 16 10 O -0.56 -33.50 14.83 16.89 0.25 -33.25 16 11 C -0.24 -10.84 5.89 -19.99 -0.12 -10.96 16 12 C -0.03 -0.92 9.54 22.52 0.21 -0.70 16 13 C -0.20 -5.40 10.02 22.25 0.22 -5.18 16 14 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 15 C -0.26 -11.21 9.16 22.36 0.20 -11.01 16 16 C 0.15 7.86 6.66 22.91 0.15 8.01 16 17 O -0.19 -12.20 7.84 0.86 0.01 -12.20 16 18 C -0.43 -26.30 9.49 67.93 0.64 -25.65 16 19 H 0.11 5.86 5.21 -2.91 -0.02 5.85 16 20 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 21 N -0.91 -60.06 13.67 21.62 0.30 -59.76 16 22 Si 1.02 45.05 29.55 68.60 2.03 47.07 16 23 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.46 14.76 7.66 71.24 0.55 15.30 16 27 O -0.55 -22.07 17.08 21.97 0.38 -21.70 16 28 O -0.50 -11.77 13.21 -51.39 -0.68 -12.45 16 29 H 0.08 1.00 7.75 -2.38 -0.02 0.98 16 30 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.05 1.19 5.42 -2.38 -0.01 1.18 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.03 0.82 6.20 -2.39 -0.01 0.81 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.29 8.11 -2.38 -0.02 1.27 16 39 H 0.11 1.57 7.96 -2.39 -0.02 1.55 16 40 H 0.42 10.11 5.02 -92.71 -0.47 9.64 16 41 H 0.16 3.33 6.40 -2.91 -0.02 3.31 16 42 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 45 H 0.27 16.37 8.31 -92.70 -0.77 15.60 16 46 H 0.42 6.49 9.10 -74.06 -0.67 5.81 16 Total: -1.00 -95.16 376.68 6.18 -88.98 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.10 Total: 36.60 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.04 Total: -9.96 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -0.73 Total: -83.09 kcal Atomic # 8 Polarization: -79.55 SS G_CDS: -0.05 Total: -79.59 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -95.16 6.18 -88.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589751286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.149 kcal (2) G-P(sol) polarization free energy of solvation -95.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds