Wall clock time and date at job start Tue Mar 31 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.52991 * 109.47511 * 239.99463 * 2 1 3 5 5 C 1.50698 * 109.46913 * 60.00082 * 4 2 1 6 6 C 1.38269 * 119.94835 * 269.72812 * 5 4 2 7 7 C 1.38143 * 120.05811 * 179.72428 * 6 5 4 8 8 C 1.38735 * 119.94048 * 0.57298 * 7 6 5 9 9 O 1.35906 * 120.05134 * 179.68451 * 8 7 6 10 10 C 1.38731 * 119.88963 * 359.70098 * 8 7 6 11 11 C 1.38139 * 119.94329 * 0.02562 * 10 8 7 12 12 C 1.50710 * 109.46689 * 119.99521 * 2 1 3 13 13 O 1.21290 * 119.99733 * 132.36265 * 12 2 1 14 14 N 1.34776 * 120.00064 * 312.36138 * 12 2 1 15 15 C 1.37095 * 119.99703 * 174.83757 * 14 12 2 16 16 H 1.08002 * 120.00115 * 217.45285 * 15 14 12 17 17 C 1.38955 * 120.00077 * 37.45527 * 15 14 12 18 18 N 1.31410 * 119.99811 * 26.69755 * 17 15 14 19 19 Si 1.86799 * 119.99904 * 206.70127 * 17 15 14 20 20 H 1.48497 * 109.47159 * 59.99798 * 19 17 15 21 21 H 1.48499 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46931 * 299.99713 * 19 17 15 23 23 C 1.46501 * 120.00097 * 354.83634 * 14 12 2 24 24 C 1.53003 * 109.47013 * 105.23985 * 23 14 12 25 25 C 1.50698 * 109.47078 * 185.57391 * 24 23 14 26 26 O 1.20824 * 120.00198 * 0.02562 * 25 24 23 27 27 O 1.34227 * 119.99766 * 180.02562 * 25 24 23 28 28 H 1.09008 * 109.46869 * 75.67669 * 1 2 3 29 29 H 1.09001 * 109.47274 * 195.67719 * 1 2 3 30 30 H 1.09004 * 109.47419 * 315.67803 * 1 2 3 31 31 H 1.08998 * 109.47134 * 74.18263 * 3 2 1 32 32 H 1.08998 * 109.47250 * 194.18450 * 3 2 1 33 33 H 1.09000 * 109.46886 * 314.18336 * 3 2 1 34 34 H 1.08997 * 109.47642 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47226 * 300.00562 * 4 2 1 36 36 H 1.08003 * 119.96742 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.02863 * 180.24847 * 7 6 5 38 38 H 0.96700 * 113.99199 * 270.01494 * 9 8 7 39 39 H 1.08003 * 120.02410 * 179.97438 * 10 8 7 40 40 H 1.08000 * 119.96713 * 179.97438 * 11 10 8 41 41 H 0.97001 * 119.99786 * 184.95890 * 18 17 15 42 42 H 1.08995 * 109.47116 * 225.23953 * 23 14 12 43 43 H 1.09004 * 109.47060 * 345.24495 * 23 14 12 44 44 H 1.09001 * 109.47088 * 305.58015 * 24 23 14 45 45 H 1.09006 * 109.46726 * 65.57378 * 24 23 14 46 46 H 0.96703 * 117.00031 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 6 0.3322 -0.3811 -3.0465 7 6 -0.1331 0.2723 -4.1712 8 6 0.6160 1.2927 -4.7388 9 8 0.1634 1.9327 -5.8490 10 6 1.8280 1.6584 -4.1714 11 6 2.2862 1.0057 -3.0435 12 6 2.0323 -0.7104 1.2306 13 8 2.9017 -1.5505 1.1335 14 7 1.5153 -0.4121 2.4391 15 6 1.8949 -1.1306 3.5432 16 1 1.1713 -1.3652 4.3099 17 6 3.2107 -1.5571 3.6760 18 7 4.1801 -0.8889 3.0922 19 14 3.6016 -3.0802 4.6844 20 1 2.9015 -4.2528 4.1015 21 1 5.0670 -3.3205 4.6703 22 1 3.1472 -2.8775 6.0835 23 6 0.5479 0.6799 2.5727 24 6 -0.8539 0.0983 2.7672 25 6 -1.8655 1.2153 2.7677 26 8 -1.5026 2.3591 2.6263 27 8 -3.1697 0.9395 2.9250 28 1 -0.3633 0.2543 -0.9958 29 1 -0.3634 -0.9894 0.2777 30 1 -0.3634 0.7352 0.7180 31 1 1.8971 1.8784 0.9887 32 1 3.1005 1.4529 -0.2518 33 1 1.4859 2.0238 -0.7370 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 -0.2481 -1.1791 -2.6072 37 1 -1.0768 -0.0146 -4.6112 38 1 0.4489 1.5285 -6.6797 39 1 2.4132 2.4523 -4.6117 40 1 3.2299 1.2898 -2.6017 41 1 5.0891 -1.2257 3.1244 42 1 0.8095 1.2936 3.4346 43 1 0.5651 1.2928 1.6715 44 1 -1.0764 -0.5932 1.9546 45 1 -0.8982 -0.4324 3.7183 46 1 -3.7807 1.6890 2.9188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590822168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:33 Heat of formation + Delta-G solvation = -117.561227 kcal Electronic energy + Delta-G solvation = -30406.162028 eV Core-core repulsion = 26262.317706 eV Total energy + Delta-G solvation = -4143.844323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42400 -39.92363 -39.01103 -37.09236 -36.06013 -34.77548 -34.71270 -32.09610 -31.02986 -30.22986 -30.06863 -26.87049 -26.13291 -25.12740 -24.13124 -22.66287 -22.07275 -20.90947 -20.42834 -18.76934 -18.43011 -17.93906 -16.51811 -16.33185 -15.96338 -15.70274 -15.66674 -15.29474 -15.04405 -14.59692 -14.47628 -13.93522 -13.66377 -13.59267 -13.34879 -13.21644 -12.96348 -12.80023 -12.51659 -12.13482 -12.11735 -11.63558 -11.50576 -11.44003 -11.36177 -11.28694 -11.09830 -10.82090 -10.74532 -10.68458 -10.59211 -10.43058 -10.38392 -10.28834 -10.10690 -9.77031 -8.91749 -8.78663 -8.34998 -7.96424 -7.13495 -6.10247 -3.81763 1.27177 1.38957 2.39710 3.21025 3.34471 3.41797 3.45624 3.64698 4.18385 4.21800 4.38689 4.81496 4.90449 4.98699 5.17406 5.21248 5.29640 5.34973 5.40638 5.45248 5.47277 5.52420 5.59423 5.78157 5.85157 5.91749 5.97257 6.01462 6.06742 6.11332 6.22113 6.25887 6.29820 6.37469 6.43409 6.47911 6.53628 6.58389 6.66085 6.72522 6.79700 6.88298 6.89951 7.58002 7.61499 8.04591 8.23208 9.04217 9.16179 9.66858 10.28455 10.96797 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004268 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.652497 B = 6558.788744 C = 8512.999168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.055 4.055 5 C -0.069 4.069 6 C -0.101 4.101 7 C -0.145 4.145 8 C 0.087 3.913 9 O -0.502 6.502 10 C -0.144 4.144 11 C -0.098 4.098 12 C 0.480 3.520 13 O -0.528 6.528 14 N -0.447 5.447 15 C -0.363 4.363 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.814 5.814 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.280 1.280 23 C 0.100 3.900 24 C -0.138 4.138 25 C 0.481 3.519 26 O -0.518 6.518 27 O -0.521 6.521 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.385 0.615 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 3.651 -11.473 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.093 4.093 5 C -0.069 4.069 6 C -0.119 4.119 7 C -0.164 4.164 8 C 0.043 3.957 9 O -0.312 6.312 10 C -0.162 4.162 11 C -0.116 4.116 12 C 0.266 3.734 13 O -0.405 6.405 14 N -0.168 5.168 15 C -0.489 4.489 16 H 0.098 0.902 17 C -0.132 4.132 18 N -0.447 5.447 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.206 1.206 23 C -0.025 4.025 24 C -0.177 4.177 25 C 0.323 3.677 26 O -0.406 6.406 27 O -0.333 6.333 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.240 0.760 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.954 3.623 -11.118 14.728 hybrid contribution -0.055 -0.415 0.146 0.444 sum -9.009 3.208 -10.972 14.554 Atomic orbital electron populations 1.22745 0.94811 1.02279 1.02615 1.20599 0.95675 0.96385 0.94690 1.21992 1.01175 0.94532 1.02136 1.20423 1.01692 0.98105 0.89049 1.20096 0.94351 0.96042 0.96434 1.20995 0.95820 0.99906 0.95217 1.21351 1.00584 0.96329 0.98121 1.18439 0.93152 0.93864 0.90203 1.84835 1.75959 1.55320 1.15067 1.21375 0.95695 1.01126 0.98053 1.21038 1.00135 0.95404 0.95028 1.19659 0.85428 0.85259 0.83008 1.90530 1.30336 1.34765 1.84879 1.43179 1.38804 1.28674 1.06160 1.18927 0.93662 1.34880 1.01395 0.90247 1.24984 0.94940 0.97167 0.96125 1.69973 1.00220 1.34383 1.40080 0.86477 0.77168 0.84130 0.79476 1.20157 1.21385 1.20555 1.21812 0.86309 0.91005 1.03331 1.22210 0.93023 0.95828 1.06633 1.23834 0.81883 0.90699 0.71237 1.90705 1.80601 1.23610 1.45711 1.84591 1.19210 1.44513 1.84977 0.92181 0.92263 0.90754 0.91593 0.92310 0.92754 0.89994 0.90754 0.85560 0.85838 0.76010 0.85793 0.85483 0.92627 0.91367 0.88798 0.87185 0.87286 0.73872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 6.58 37.16 0.24 -2.37 16 2 C -0.07 -1.26 0.52 -155.66 -0.08 -1.35 16 3 C -0.14 -2.45 7.01 37.16 0.26 -2.19 16 4 C -0.06 -0.92 3.78 -27.89 -0.11 -1.03 16 5 C -0.07 -0.97 4.10 -104.60 -0.43 -1.40 16 6 C -0.10 -1.28 7.64 -39.60 -0.30 -1.58 16 7 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 8 C 0.09 1.05 6.70 -39.22 -0.26 0.78 16 9 O -0.50 -5.27 13.50 -19.44 -0.26 -5.53 16 10 C -0.14 -1.74 9.99 -39.44 -0.39 -2.13 16 11 C -0.10 -1.29 8.26 -39.61 -0.33 -1.61 16 12 C 0.48 11.34 5.85 -10.98 -0.06 11.28 16 13 O -0.53 -14.70 13.13 5.55 0.07 -14.63 16 14 N -0.45 -10.50 2.59 -114.80 -0.30 -10.80 16 15 C -0.36 -9.52 9.15 -14.93 -0.14 -9.66 16 16 H 0.08 1.98 7.76 -52.49 -0.41 1.57 16 17 C 0.08 2.19 4.12 -17.47 -0.07 2.12 16 18 N -0.81 -23.63 11.58 55.50 0.64 -22.99 16 19 Si 0.90 21.50 29.63 -169.99 -5.04 16.46 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.10 1.92 3.59 -4.04 -0.01 1.91 16 24 C -0.14 -2.18 5.00 -27.88 -0.14 -2.32 16 25 C 0.48 6.97 7.85 36.00 0.28 7.26 16 26 O -0.52 -8.81 16.66 -18.75 -0.31 -9.12 16 27 O -0.52 -5.92 13.42 -39.25 -0.53 -6.45 16 28 H 0.06 0.84 5.14 -51.92 -0.27 0.57 16 29 H 0.06 0.91 6.93 -51.93 -0.36 0.55 16 30 H 0.07 1.16 3.36 -51.93 -0.17 0.99 16 31 H 0.07 1.23 5.71 -51.93 -0.30 0.93 16 32 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 33 H 0.05 0.84 7.13 -51.93 -0.37 0.47 16 34 H 0.08 1.50 7.91 -51.93 -0.41 1.09 16 35 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.13 1.45 7.92 -52.48 -0.42 1.03 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.38 2.11 9.06 45.56 0.41 2.53 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.13 1.60 7.87 -52.49 -0.41 1.19 16 41 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 1.72 2.43 -51.93 -0.13 1.60 16 44 H 0.11 1.65 5.62 -51.93 -0.29 1.35 16 45 H 0.11 1.70 7.93 -51.93 -0.41 1.29 16 46 H 0.40 2.75 9.10 45.56 0.41 3.16 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -34.67 364.41 -6.51 -41.19 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.35 Total: 10.76 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.94 Total: -4.38 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.35 Total: -33.79 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.03 Total: -35.73 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.04 Total: 16.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.67 -6.51 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590822168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.373 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds