Wall clock time and date at job start Tue Mar 31 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.52991 * 109.47511 * 239.99463 * 2 1 3 5 5 C 1.50698 * 109.46913 * 60.00082 * 4 2 1 6 6 C 1.38269 * 119.94835 * 269.72812 * 5 4 2 7 7 C 1.38143 * 120.05811 * 179.72428 * 6 5 4 8 8 C 1.38735 * 119.94048 * 0.57298 * 7 6 5 9 9 O 1.35906 * 120.05134 * 179.68451 * 8 7 6 10 10 C 1.38731 * 119.88963 * 359.70098 * 8 7 6 11 11 C 1.38139 * 119.94329 * 0.02562 * 10 8 7 12 12 C 1.50710 * 109.46689 * 119.99521 * 2 1 3 13 13 O 1.21290 * 119.99733 * 132.36265 * 12 2 1 14 14 N 1.34776 * 120.00064 * 312.36138 * 12 2 1 15 15 C 1.37095 * 119.99703 * 174.83757 * 14 12 2 16 16 H 1.08002 * 120.00115 * 217.45285 * 15 14 12 17 17 C 1.38955 * 120.00077 * 37.45527 * 15 14 12 18 18 N 1.31410 * 119.99811 * 26.69755 * 17 15 14 19 19 Si 1.86799 * 119.99904 * 206.70127 * 17 15 14 20 20 H 1.48497 * 109.47159 * 59.99798 * 19 17 15 21 21 H 1.48499 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46931 * 299.99713 * 19 17 15 23 23 C 1.46501 * 120.00097 * 354.83634 * 14 12 2 24 24 C 1.53003 * 109.47013 * 105.23985 * 23 14 12 25 25 C 1.50698 * 109.47078 * 185.57391 * 24 23 14 26 26 O 1.20824 * 120.00198 * 0.02562 * 25 24 23 27 27 O 1.34227 * 119.99766 * 180.02562 * 25 24 23 28 28 H 1.09008 * 109.46869 * 75.67669 * 1 2 3 29 29 H 1.09001 * 109.47274 * 195.67719 * 1 2 3 30 30 H 1.09004 * 109.47419 * 315.67803 * 1 2 3 31 31 H 1.08998 * 109.47134 * 74.18263 * 3 2 1 32 32 H 1.08998 * 109.47250 * 194.18450 * 3 2 1 33 33 H 1.09000 * 109.46886 * 314.18336 * 3 2 1 34 34 H 1.08997 * 109.47642 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47226 * 300.00562 * 4 2 1 36 36 H 1.08003 * 119.96742 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.02863 * 180.24847 * 7 6 5 38 38 H 0.96700 * 113.99199 * 270.01494 * 9 8 7 39 39 H 1.08003 * 120.02410 * 179.97438 * 10 8 7 40 40 H 1.08000 * 119.96713 * 179.97438 * 11 10 8 41 41 H 0.97001 * 119.99786 * 184.95890 * 18 17 15 42 42 H 1.08995 * 109.47116 * 225.23953 * 23 14 12 43 43 H 1.09004 * 109.47060 * 345.24495 * 23 14 12 44 44 H 1.09001 * 109.47088 * 305.58015 * 24 23 14 45 45 H 1.09006 * 109.46726 * 65.57378 * 24 23 14 46 46 H 0.96703 * 117.00031 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 6 0.3322 -0.3811 -3.0465 7 6 -0.1331 0.2723 -4.1712 8 6 0.6160 1.2927 -4.7388 9 8 0.1634 1.9327 -5.8490 10 6 1.8280 1.6584 -4.1714 11 6 2.2862 1.0057 -3.0435 12 6 2.0323 -0.7104 1.2306 13 8 2.9017 -1.5505 1.1335 14 7 1.5153 -0.4121 2.4391 15 6 1.8949 -1.1306 3.5432 16 1 1.1713 -1.3652 4.3099 17 6 3.2107 -1.5571 3.6760 18 7 4.1801 -0.8889 3.0922 19 14 3.6016 -3.0802 4.6844 20 1 2.9015 -4.2528 4.1015 21 1 5.0670 -3.3205 4.6703 22 1 3.1472 -2.8775 6.0835 23 6 0.5479 0.6799 2.5727 24 6 -0.8539 0.0983 2.7672 25 6 -1.8655 1.2153 2.7677 26 8 -1.5026 2.3591 2.6263 27 8 -3.1697 0.9395 2.9250 28 1 -0.3633 0.2543 -0.9958 29 1 -0.3634 -0.9894 0.2777 30 1 -0.3634 0.7352 0.7180 31 1 1.8971 1.8784 0.9887 32 1 3.1005 1.4529 -0.2518 33 1 1.4859 2.0238 -0.7370 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2491 36 1 -0.2481 -1.1791 -2.6072 37 1 -1.0768 -0.0146 -4.6112 38 1 0.4489 1.5285 -6.6797 39 1 2.4132 2.4523 -4.6117 40 1 3.2299 1.2898 -2.6017 41 1 5.0891 -1.2257 3.1244 42 1 0.8095 1.2936 3.4346 43 1 0.5651 1.2928 1.6715 44 1 -1.0764 -0.5932 1.9546 45 1 -0.8982 -0.4324 3.7183 46 1 -3.7807 1.6890 2.9188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590822168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:32 Heat of formation + Delta-G solvation = -141.860019 kcal Electronic energy + Delta-G solvation = -30407.215703 eV Core-core repulsion = 26262.317706 eV Total energy + Delta-G solvation = -4144.897997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76451 -41.01453 -40.31771 -38.15912 -37.20068 -36.44968 -36.16067 -33.94087 -31.98288 -31.78142 -31.30067 -28.22376 -27.39077 -26.95978 -25.63128 -23.60944 -23.36728 -22.19744 -21.81270 -20.35844 -19.27999 -19.09906 -18.13324 -17.82266 -17.23032 -16.78362 -16.72289 -16.64456 -16.40189 -16.23516 -15.82275 -15.48805 -15.17926 -14.87398 -14.54942 -14.35416 -14.25268 -14.17995 -13.90403 -13.45121 -13.26946 -13.22557 -13.03978 -12.85084 -12.73272 -12.62087 -12.49855 -12.39772 -12.36076 -12.17797 -12.07786 -12.06320 -11.70113 -11.53793 -11.30599 -11.24362 -10.76419 -9.88369 -9.83783 -9.33685 -9.10048 -8.16076 -5.88835 0.31507 0.45204 1.24790 1.41810 1.49429 1.53087 2.09186 2.35936 2.53714 2.70588 3.17548 3.30705 3.38916 3.80838 3.87692 3.93733 3.99111 4.04789 4.12872 4.14564 4.20218 4.44586 4.49912 4.52210 4.57224 4.65869 4.69529 4.79889 4.83452 4.87595 4.91763 4.96696 5.03973 5.12577 5.13993 5.23564 5.37149 5.37976 5.43564 5.51172 5.55328 5.65805 5.77883 5.95167 6.20705 6.91759 7.05394 7.07405 7.24861 7.73459 8.40465 8.90458 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004268 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.652497 B = 6558.788744 C = 8512.999168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.044 4.044 5 C -0.083 4.083 6 C -0.101 4.101 7 C -0.145 4.145 8 C 0.093 3.907 9 O -0.509 6.509 10 C -0.148 4.148 11 C -0.105 4.105 12 C 0.469 3.531 13 O -0.579 6.579 14 N -0.459 5.459 15 C -0.372 4.372 16 H 0.090 0.910 17 C 0.030 3.970 18 N -0.854 5.854 19 Si 0.958 3.042 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.259 1.259 23 C 0.102 3.898 24 C -0.132 4.132 25 C 0.496 3.504 26 O -0.545 6.545 27 O -0.509 6.509 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.256 0.744 42 H 0.050 0.950 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 4.096 -12.818 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.066 4.066 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.083 4.083 6 C -0.119 4.119 7 C -0.163 4.163 8 C 0.049 3.951 9 O -0.323 6.323 10 C -0.166 4.166 11 C -0.123 4.123 12 C 0.258 3.742 13 O -0.459 6.459 14 N -0.180 5.180 15 C -0.499 4.499 16 H 0.108 0.892 17 C -0.178 4.178 18 N -0.489 5.489 19 Si 0.783 3.217 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.184 1.184 23 C -0.022 4.022 24 C -0.171 4.171 25 C 0.339 3.661 26 O -0.436 6.436 27 O -0.323 6.323 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.267 0.733 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -11.950 4.084 -12.454 17.737 hybrid contribution 0.750 -0.498 0.476 1.019 sum -11.200 3.586 -11.977 16.786 Atomic orbital electron populations 1.22667 0.92343 1.02506 1.04026 1.20521 0.97537 0.96022 0.92535 1.21914 1.00904 0.94284 1.01899 1.20213 0.99975 0.97978 0.90064 1.19823 0.95597 0.96932 0.95987 1.21100 0.95192 1.00138 0.95450 1.21564 1.01312 0.95902 0.97538 1.18549 0.92701 0.93303 0.90530 1.84774 1.75989 1.55658 1.15833 1.21529 0.96172 1.01381 0.97561 1.21059 1.00096 0.95544 0.95625 1.20613 0.84354 0.84798 0.84463 1.90491 1.32412 1.37056 1.85947 1.43390 1.39464 1.29411 1.05744 1.19338 0.93634 1.34791 1.02143 0.89248 1.25804 0.95160 0.99541 0.97293 1.70084 1.00113 1.35815 1.42917 0.85572 0.76353 0.80653 0.79095 1.20626 1.22093 1.18389 1.21844 0.87321 0.89918 1.03092 1.21953 0.91457 0.96366 1.07293 1.23282 0.82675 0.89447 0.70655 1.90713 1.81286 1.24429 1.47165 1.84511 1.17975 1.45714 1.84064 0.89921 0.92019 0.90662 0.93100 0.93469 0.90192 0.92742 0.91591 0.84434 0.83665 0.73272 0.84296 0.85890 0.93517 0.93120 0.87804 0.86012 0.87034 0.71072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 6.58 71.98 0.47 -4.21 16 2 C -0.06 -2.28 0.52 -52.93 -0.03 -2.31 16 3 C -0.13 -4.65 7.01 71.98 0.50 -4.14 16 4 C -0.04 -1.52 3.78 29.84 0.11 -1.41 16 5 C -0.08 -2.25 4.10 -19.85 -0.08 -2.33 16 6 C -0.10 -2.29 7.64 22.25 0.17 -2.12 16 7 C -0.14 -2.91 9.99 22.37 0.22 -2.69 16 8 C 0.09 1.94 6.70 22.51 0.15 2.09 16 9 O -0.51 -8.86 13.50 -92.49 -1.25 -10.11 16 10 C -0.15 -3.25 9.99 22.36 0.22 -3.02 16 11 C -0.11 -2.66 8.26 22.25 0.18 -2.48 16 12 C 0.47 22.86 5.85 87.66 0.51 23.37 16 13 O -0.58 -33.73 13.13 -3.06 -0.04 -33.77 16 14 N -0.46 -22.02 2.59 -635.52 -1.65 -23.66 16 15 C -0.37 -19.89 9.15 84.04 0.77 -19.12 16 16 H 0.09 4.46 7.76 -2.91 -0.02 4.43 16 17 C 0.03 1.67 4.12 84.93 0.35 2.02 16 18 N -0.85 -51.83 11.58 21.66 0.25 -51.58 16 19 Si 0.96 45.19 29.63 68.60 2.03 47.22 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 23 C 0.10 3.91 3.59 86.38 0.31 4.22 16 24 C -0.13 -3.97 5.00 29.85 0.15 -3.82 16 25 C 0.50 13.20 7.85 71.24 0.56 13.75 16 26 O -0.55 -17.52 16.66 21.97 0.37 -17.16 16 27 O -0.51 -9.77 13.42 -51.38 -0.69 -10.46 16 28 H 0.08 2.08 5.14 -2.38 -0.01 2.07 16 29 H 0.06 1.79 6.93 -2.39 -0.02 1.77 16 30 H 0.07 2.20 3.36 -2.38 -0.01 2.20 16 31 H 0.05 1.92 5.71 -2.39 -0.01 1.91 16 32 H 0.05 1.73 7.91 -2.39 -0.02 1.71 16 33 H 0.08 2.37 7.13 -2.39 -0.02 2.35 16 34 H 0.05 2.12 7.91 -2.39 -0.02 2.10 16 35 H 0.07 2.31 8.08 -2.38 -0.02 2.29 16 36 H 0.14 2.77 7.92 -2.91 -0.02 2.75 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.41 2.99 9.06 -74.06 -0.67 2.31 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.12 3.14 7.87 -2.91 -0.02 3.11 16 41 H 0.26 15.20 8.32 -92.71 -0.77 14.43 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.10 3.78 2.43 -2.38 -0.01 3.77 16 44 H 0.12 3.39 5.62 -2.39 -0.01 3.37 16 45 H 0.11 3.32 7.93 -2.38 -0.02 3.30 16 46 H 0.43 4.17 9.10 -74.06 -0.67 3.49 16 Total: -1.00 -77.26 364.41 3.31 -73.94 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.29 Total: 27.76 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.58 Total: -2.18 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.40 Total: -75.25 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: -1.61 Total: -71.50 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.26 3.31 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590822168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.917 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds