Wall clock time and date at job start Tue Mar 31 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53004 * 109.47073 * 120.00045 * 2 1 3 5 5 C 1.52998 * 109.47052 * 174.99500 * 4 2 1 6 6 H 1.09011 * 109.46731 * 55.00598 * 5 4 2 7 7 C 1.50698 * 109.47079 * 174.99880 * 5 4 2 8 8 O 1.20825 * 120.00041 * 120.00033 * 7 5 4 9 9 O 1.34233 * 120.00052 * 299.73133 * 7 5 4 10 10 N 1.46488 * 109.47775 * 295.00395 * 5 4 2 11 11 C 1.46507 * 119.99970 * 299.99810 * 10 5 4 12 12 C 1.34776 * 120.00678 * 119.99438 * 10 5 4 13 13 O 1.21592 * 119.99554 * 355.65656 * 12 10 5 14 14 C 1.47531 * 120.00339 * 175.65163 * 12 10 5 15 15 C 1.39660 * 120.19789 * 47.20276 * 14 12 10 16 16 C 1.37836 * 119.92150 * 179.97438 * 15 14 12 17 17 C 1.38573 * 120.31933 * 0.02562 * 16 15 14 18 18 C 1.38018 * 120.40457 * 359.97334 * 17 16 15 19 19 C 1.38843 * 120.07276 * 359.74874 * 18 17 16 20 20 O 1.35515 * 120.16069 * 180.27432 * 19 18 17 21 21 C 1.34811 * 117.00332 * 354.19710 * 20 19 18 22 22 H 1.08002 * 120.00147 * 5.16383 * 21 20 19 23 23 C 1.38697 * 120.00310 * 185.15606 * 21 20 19 24 24 N 1.31513 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47553 * 60.00154 * 25 23 21 27 27 H 1.48509 * 109.46953 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47433 * 299.99709 * 25 23 21 29 29 H 1.08995 * 109.47297 * 300.00113 * 1 2 3 30 30 H 1.09001 * 109.47077 * 59.99886 * 1 2 3 31 31 H 1.08996 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47026 * 240.00116 * 2 1 3 33 33 H 1.09001 * 109.47127 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47198 * 300.00039 * 3 2 1 35 35 H 1.09003 * 109.47037 * 60.00123 * 3 2 1 36 36 H 1.08999 * 109.47017 * 54.99773 * 4 2 1 37 37 H 1.08997 * 109.47307 * 295.00086 * 4 2 1 38 38 H 0.96705 * 116.99803 * 180.27399 * 9 7 5 39 39 H 1.09001 * 109.47073 * 95.42938 * 11 10 5 40 40 H 1.08990 * 109.47670 * 215.43248 * 11 10 5 41 41 H 1.09007 * 109.46843 * 335.43867 * 11 10 5 42 42 H 1.08004 * 120.04186 * 0.02562 * 15 14 12 43 43 H 1.07994 * 119.83543 * 180.02562 * 16 15 14 44 44 H 1.07999 * 119.79287 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.96536 * 180.02562 * 18 17 16 46 46 H 0.97007 * 120.00012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8312 1.1879 6 1 3.9954 0.1611 1.0527 7 6 4.0772 -1.4304 2.4722 8 8 4.6987 -2.4663 2.4498 9 8 3.8480 -0.8104 3.6405 10 7 3.9479 -1.6872 0.0626 11 6 3.4906 -3.0781 0.0114 12 6 4.7210 -1.1954 -0.9257 13 8 5.0352 -0.0207 -0.9243 14 6 5.1863 -2.0821 -2.0091 15 6 4.2890 -2.9403 -2.6486 16 6 4.7297 -3.7660 -3.6605 17 6 6.0603 -3.7498 -4.0471 18 6 6.9585 -2.9070 -3.4242 19 6 6.5313 -2.0642 -2.4069 20 8 7.4105 -1.2320 -1.7979 21 6 8.7082 -1.3549 -2.1415 22 1 8.9959 -2.0329 -2.9315 23 6 9.6741 -0.6105 -1.4807 24 7 9.3240 0.2149 -0.5186 25 14 11.4723 -0.7803 -1.9574 26 1 11.6439 -0.4050 -3.3839 27 1 12.2966 0.1154 -1.1068 28 1 11.9061 -2.1868 -1.7600 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1584 2.1370 38 1 4.1999 -1.2309 4.4371 39 1 2.5866 -3.1413 -0.5944 40 1 4.2685 -3.7004 -0.4307 41 1 3.2761 -3.4275 1.0215 42 1 3.2508 -2.9563 -2.3513 43 1 4.0346 -4.4287 -4.1543 44 1 6.3965 -4.4006 -4.8406 45 1 7.9938 -2.8999 -3.7314 46 1 9.9995 0.7358 -0.0567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591423582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:02 Heat of formation + Delta-G solvation = -124.635516 kcal Electronic energy + Delta-G solvation = -30496.681670 eV Core-core repulsion = 26352.530583 eV Total energy + Delta-G solvation = -4144.151087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73839 -39.56275 -38.38454 -36.69767 -36.35090 -36.08763 -34.45614 -32.36001 -31.29860 -29.52177 -28.96821 -27.16527 -26.57599 -25.44128 -24.95528 -23.18110 -21.71230 -21.00873 -20.02753 -19.01493 -18.12639 -17.99695 -17.21506 -16.73313 -16.50943 -15.61838 -15.57381 -15.06364 -14.72859 -14.68197 -14.24565 -14.04439 -13.89082 -13.69397 -13.54739 -13.30756 -12.98715 -12.61445 -12.53934 -12.43076 -12.27290 -12.16503 -11.91594 -11.72239 -11.69467 -11.38556 -11.28652 -11.10653 -11.04099 -10.88581 -10.75085 -10.64049 -10.63004 -10.47763 -10.27199 -9.63039 -9.08049 -8.88680 -8.40502 -8.24429 -7.33659 -6.47295 -4.07255 1.78790 2.28099 2.30143 2.73833 3.11216 3.13261 3.15698 3.44041 3.55379 3.92690 4.50364 4.64504 4.82155 4.86474 5.03724 5.11078 5.15249 5.24042 5.33489 5.38920 5.46241 5.50634 5.60322 5.66276 5.67771 5.74698 5.78507 5.81473 5.91323 5.96987 6.01670 6.07805 6.14591 6.17736 6.37929 6.48312 6.54811 6.55792 6.61551 6.77216 6.93315 7.03831 7.23261 7.27697 7.67444 7.73697 7.93380 7.96324 8.79562 8.94661 9.63225 10.68099 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004303 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.897837 B = 6505.154180 C = 7621.793074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.115 4.115 5 C 0.152 3.848 6 H 0.141 0.859 7 C 0.466 3.534 8 O -0.500 6.500 9 O -0.516 6.516 10 N -0.601 5.601 11 C 0.085 3.915 12 C 0.581 3.419 13 O -0.511 6.511 14 C -0.217 4.217 15 C -0.041 4.041 16 C -0.226 4.226 17 C -0.053 4.053 18 C -0.235 4.235 19 C 0.190 3.810 20 O -0.145 6.145 21 C -0.400 4.400 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.844 5.844 25 Si 0.942 3.058 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -4.383 3.141 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.212 4.212 4 C -0.154 4.154 5 C 0.046 3.954 6 H 0.158 0.842 7 C 0.307 3.693 8 O -0.386 6.386 9 O -0.328 6.328 10 N -0.337 5.337 11 C -0.058 4.058 12 C 0.372 3.628 13 O -0.385 6.385 14 C -0.222 4.222 15 C -0.060 4.060 16 C -0.245 4.245 17 C -0.072 4.072 18 C -0.254 4.254 19 C 0.132 3.868 20 O -0.045 6.045 21 C -0.476 4.476 22 H 0.111 0.889 23 C -0.163 4.163 24 N -0.476 5.476 25 Si 0.766 3.234 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.266 0.734 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.877 -3.455 3.128 15.590 hybrid contribution 1.290 -0.615 0.321 1.465 sum -13.586 -4.070 3.449 14.596 Atomic orbital electron populations 1.21813 0.95111 1.01437 1.01730 1.21033 0.95343 0.96852 0.97845 1.21945 1.02680 0.95203 1.01351 1.21964 0.91694 1.01798 0.99915 1.20514 0.96394 0.97259 0.81220 0.84150 1.24093 0.76746 0.82762 0.85748 1.90735 1.37059 1.23699 1.87092 1.84527 1.74577 1.56020 1.17652 1.47458 1.53079 1.12421 1.20755 1.21883 0.99626 0.82062 1.02214 1.18263 0.75928 0.87492 0.81127 1.90788 1.54454 1.16733 1.76498 1.18588 0.93051 1.06418 1.04140 1.20858 0.97606 0.92882 0.94654 1.20476 0.96014 1.05095 1.02894 1.20892 0.93143 0.96089 0.97029 1.21126 1.01084 1.02050 1.01164 1.19191 0.89117 0.88104 0.90400 1.84027 1.16988 1.47252 1.56244 1.21380 0.79152 1.26897 1.20142 0.88852 1.25360 1.00151 0.95409 0.95358 1.70069 1.34795 1.22468 1.20276 0.85773 0.80073 0.78715 0.78825 1.19313 1.20168 1.19379 0.92762 0.92620 0.92905 0.90709 0.91136 0.92754 0.92884 0.91124 0.89635 0.73412 0.93059 0.90132 0.91393 0.86429 0.87163 0.87155 0.85058 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -1.06 2.86 -90.62 -0.26 -1.32 16 3 C -0.15 -1.93 8.95 37.16 0.33 -1.60 16 4 C -0.12 -1.29 4.08 -26.73 -0.11 -1.40 16 5 C 0.15 2.34 2.41 -69.09 -0.17 2.17 16 6 H 0.14 2.45 5.11 -51.92 -0.27 2.18 16 7 C 0.47 7.20 7.32 36.00 0.26 7.46 16 8 O -0.50 -9.27 15.37 -18.75 -0.29 -9.56 16 9 O -0.52 -6.06 13.24 -39.26 -0.52 -6.58 16 10 N -0.60 -10.40 1.91 -176.50 -0.34 -10.74 16 11 C 0.08 1.21 7.42 59.85 0.44 1.65 16 12 C 0.58 12.70 7.00 -12.47 -0.09 12.61 16 13 O -0.51 -13.06 15.18 -5.87 -0.09 -13.15 16 14 C -0.22 -4.73 4.97 -104.81 -0.52 -5.25 16 15 C -0.04 -0.71 7.74 -39.20 -0.30 -1.02 16 16 C -0.23 -3.67 10.03 -39.60 -0.40 -4.07 16 17 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 18 C -0.24 -5.05 9.16 -39.44 -0.36 -5.42 16 19 C 0.19 4.72 6.63 -38.59 -0.26 4.47 16 20 O -0.15 -4.30 8.74 -10.33 -0.09 -4.39 16 21 C -0.40 -11.37 9.49 30.90 0.29 -11.08 16 22 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 23 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 24 N -0.84 -25.50 13.67 55.48 0.76 -24.74 16 25 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.99 7.62 -51.93 -0.40 0.60 16 33 H 0.07 1.10 5.85 -51.93 -0.30 0.79 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.71 7.51 -51.93 -0.39 0.32 16 37 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 38 H 0.41 3.06 9.10 45.56 0.41 3.48 16 39 H 0.05 0.57 6.97 -51.93 -0.36 0.21 16 40 H 0.08 1.27 6.25 -51.93 -0.32 0.95 16 41 H 0.07 0.91 6.45 -51.93 -0.33 0.58 16 42 H 0.12 1.64 6.11 -52.48 -0.32 1.32 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -35.94 376.72 -6.55 -42.49 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.36 Total: 9.21 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.28 Total: -3.91 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.42 Total: -35.48 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.99 Total: -33.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.94 -6.55 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591423582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.145 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds