Wall clock time and date at job start Tue Mar 31 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53004 * 109.47073 * 120.00045 * 2 1 3 5 5 C 1.52998 * 109.47052 * 174.99500 * 4 2 1 6 6 H 1.09011 * 109.46731 * 55.00598 * 5 4 2 7 7 C 1.50698 * 109.47079 * 174.99880 * 5 4 2 8 8 O 1.20825 * 120.00041 * 120.00033 * 7 5 4 9 9 O 1.34233 * 120.00052 * 299.73133 * 7 5 4 10 10 N 1.46488 * 109.47775 * 295.00395 * 5 4 2 11 11 C 1.46507 * 119.99970 * 299.99810 * 10 5 4 12 12 C 1.34776 * 120.00678 * 119.99438 * 10 5 4 13 13 O 1.21592 * 119.99554 * 355.65656 * 12 10 5 14 14 C 1.47531 * 120.00339 * 175.65163 * 12 10 5 15 15 C 1.39660 * 120.19789 * 47.20276 * 14 12 10 16 16 C 1.37836 * 119.92150 * 179.97438 * 15 14 12 17 17 C 1.38573 * 120.31933 * 0.02562 * 16 15 14 18 18 C 1.38018 * 120.40457 * 359.97334 * 17 16 15 19 19 C 1.38843 * 120.07276 * 359.74874 * 18 17 16 20 20 O 1.35515 * 120.16069 * 180.27432 * 19 18 17 21 21 C 1.34811 * 117.00332 * 354.19710 * 20 19 18 22 22 H 1.08002 * 120.00147 * 5.16383 * 21 20 19 23 23 C 1.38697 * 120.00310 * 185.15606 * 21 20 19 24 24 N 1.31513 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47553 * 60.00154 * 25 23 21 27 27 H 1.48509 * 109.46953 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47433 * 299.99709 * 25 23 21 29 29 H 1.08995 * 109.47297 * 300.00113 * 1 2 3 30 30 H 1.09001 * 109.47077 * 59.99886 * 1 2 3 31 31 H 1.08996 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47026 * 240.00116 * 2 1 3 33 33 H 1.09001 * 109.47127 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47198 * 300.00039 * 3 2 1 35 35 H 1.09003 * 109.47037 * 60.00123 * 3 2 1 36 36 H 1.08999 * 109.47017 * 54.99773 * 4 2 1 37 37 H 1.08997 * 109.47307 * 295.00086 * 4 2 1 38 38 H 0.96705 * 116.99803 * 180.27399 * 9 7 5 39 39 H 1.09001 * 109.47073 * 95.42938 * 11 10 5 40 40 H 1.08990 * 109.47670 * 215.43248 * 11 10 5 41 41 H 1.09007 * 109.46843 * 335.43867 * 11 10 5 42 42 H 1.08004 * 120.04186 * 0.02562 * 15 14 12 43 43 H 1.07994 * 119.83543 * 180.02562 * 16 15 14 44 44 H 1.07999 * 119.79287 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.96536 * 180.02562 * 18 17 16 46 46 H 0.97007 * 120.00012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8312 1.1879 6 1 3.9954 0.1611 1.0527 7 6 4.0772 -1.4304 2.4722 8 8 4.6987 -2.4663 2.4498 9 8 3.8480 -0.8104 3.6405 10 7 3.9479 -1.6872 0.0626 11 6 3.4906 -3.0781 0.0114 12 6 4.7210 -1.1954 -0.9257 13 8 5.0352 -0.0207 -0.9243 14 6 5.1863 -2.0821 -2.0091 15 6 4.2890 -2.9403 -2.6486 16 6 4.7297 -3.7660 -3.6605 17 6 6.0603 -3.7498 -4.0471 18 6 6.9585 -2.9070 -3.4242 19 6 6.5313 -2.0642 -2.4069 20 8 7.4105 -1.2320 -1.7979 21 6 8.7082 -1.3549 -2.1415 22 1 8.9959 -2.0329 -2.9315 23 6 9.6741 -0.6105 -1.4807 24 7 9.3240 0.2149 -0.5186 25 14 11.4723 -0.7803 -1.9574 26 1 11.6439 -0.4050 -3.3839 27 1 12.2966 0.1154 -1.1068 28 1 11.9061 -2.1868 -1.7600 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1584 2.1370 38 1 4.1999 -1.2309 4.4371 39 1 2.5866 -3.1413 -0.5944 40 1 4.2685 -3.7004 -0.4307 41 1 3.2761 -3.4275 1.0215 42 1 3.2508 -2.9563 -2.3513 43 1 4.0346 -4.4287 -4.1543 44 1 6.3965 -4.4006 -4.8406 45 1 7.9938 -2.8999 -3.7314 46 1 9.9995 0.7358 -0.0567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591423582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:01 Heat of formation + Delta-G solvation = -149.343052 kcal Electronic energy + Delta-G solvation = -30497.753069 eV Core-core repulsion = 26352.530583 eV Total energy + Delta-G solvation = -4145.222486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08274 -41.10239 -39.96853 -38.13131 -37.85455 -37.26835 -35.78201 -34.36418 -32.68028 -30.84128 -30.60922 -28.15168 -27.74016 -27.43281 -26.07230 -24.64977 -23.34462 -22.35241 -21.09483 -20.37940 -19.93034 -19.32493 -18.77559 -18.14163 -17.94401 -17.10756 -16.90041 -16.43275 -16.39994 -15.92683 -15.78757 -15.49542 -15.36132 -15.22211 -14.88188 -14.57682 -14.33750 -14.24584 -13.86394 -13.60751 -13.56396 -13.49178 -13.17685 -12.97109 -12.94036 -12.67090 -12.62389 -12.51893 -12.47031 -12.30748 -12.17180 -12.09922 -11.65181 -11.55728 -11.46603 -11.41845 -10.85300 -10.76042 -9.83462 -9.74953 -9.06109 -8.49915 -6.20241 0.21756 0.70872 1.02552 1.29713 1.40825 1.42717 1.47543 1.98748 2.13372 2.22826 2.80955 3.14481 3.39917 3.54932 3.76602 3.88547 3.92208 4.06536 4.15459 4.21684 4.26744 4.31972 4.41748 4.52618 4.61735 4.65841 4.75333 4.77504 4.81391 4.87832 4.94273 4.96474 5.05625 5.05965 5.12059 5.13100 5.33980 5.39833 5.45329 5.49295 5.52008 5.54784 5.57997 5.69609 5.92300 6.16097 6.27689 6.85833 6.91414 7.19828 7.73999 8.71886 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004303 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.897837 B = 6505.154180 C = 7621.793074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.102 4.102 5 C 0.144 3.856 6 H 0.111 0.889 7 C 0.472 3.528 8 O -0.537 6.537 9 O -0.502 6.502 10 N -0.593 5.593 11 C 0.080 3.920 12 C 0.572 3.428 13 O -0.566 6.566 14 C -0.232 4.232 15 C -0.034 4.034 16 C -0.193 4.193 17 C -0.045 4.045 18 C -0.253 4.253 19 C 0.145 3.855 20 O -0.211 6.211 21 C -0.422 4.422 22 H 0.107 0.893 23 C -0.023 4.023 24 N -0.915 5.915 25 Si 1.022 2.978 26 H -0.253 1.253 27 H -0.273 1.273 28 H -0.254 1.254 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.428 0.572 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.469 -7.525 1.991 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.140 4.140 5 C 0.038 3.962 6 H 0.129 0.871 7 C 0.314 3.686 8 O -0.426 6.426 9 O -0.315 6.315 10 N -0.327 5.327 11 C -0.061 4.061 12 C 0.363 3.637 13 O -0.445 6.445 14 C -0.237 4.237 15 C -0.052 4.052 16 C -0.211 4.211 17 C -0.063 4.063 18 C -0.272 4.272 19 C 0.092 3.908 20 O -0.115 6.115 21 C -0.498 4.498 22 H 0.124 0.876 23 C -0.221 4.221 24 N -0.551 5.551 25 Si 0.840 3.160 26 H -0.177 1.177 27 H -0.198 1.198 28 H -0.178 1.178 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.290 0.710 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.172 0.828 45 H 0.141 0.859 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.229 -6.670 1.986 19.512 hybrid contribution 1.928 0.162 0.613 2.029 sum -16.301 -6.508 2.599 17.744 Atomic orbital electron populations 1.21750 0.92401 1.02722 1.02443 1.21007 0.97375 0.95390 0.97045 1.21923 1.00065 0.96864 1.02232 1.21970 0.87967 1.03459 1.00637 1.20728 0.99293 0.95452 0.80685 0.87116 1.24036 0.75842 0.82100 0.86634 1.90724 1.38703 1.25447 1.87771 1.84468 1.74014 1.55389 1.17604 1.47434 1.51524 1.13747 1.19971 1.22123 1.00539 0.79735 1.03730 1.18513 0.76058 0.86904 0.82252 1.90757 1.56684 1.19073 1.77971 1.19063 0.92779 1.07117 1.04698 1.21360 0.98683 0.91240 0.93931 1.21185 0.96105 1.03320 1.00533 1.21413 0.93158 0.94792 0.96894 1.21277 1.01841 1.02875 1.01194 1.19959 0.90062 0.89142 0.91653 1.84017 1.17709 1.50625 1.59151 1.21929 0.79775 1.27384 1.20706 0.87561 1.26741 1.05518 0.94769 0.95122 1.70259 1.36425 1.25252 1.23187 0.84621 0.73055 0.79311 0.78994 1.17749 1.19763 1.17791 0.91507 0.92546 0.91287 0.92687 0.95172 0.92834 0.91025 0.88733 0.87697 0.70955 0.88787 0.91750 0.90323 0.82340 0.81664 0.82810 0.85933 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.09 -1.92 2.86 -10.80 -0.03 -1.95 16 3 C -0.15 -3.93 8.95 71.98 0.64 -3.29 16 4 C -0.10 -2.09 4.08 30.59 0.12 -1.97 16 5 C 0.14 4.51 2.41 44.25 0.11 4.62 16 6 H 0.11 4.22 5.11 -2.38 -0.01 4.21 16 7 C 0.47 14.63 7.32 71.24 0.52 15.15 16 8 O -0.54 -20.21 15.37 21.97 0.34 -19.88 16 9 O -0.50 -11.30 13.24 -51.44 -0.68 -11.98 16 10 N -0.59 -20.75 1.91 -830.57 -1.58 -22.33 16 11 C 0.08 2.10 7.42 127.77 0.95 3.05 16 12 C 0.57 26.33 7.00 86.69 0.61 26.94 16 13 O -0.57 -31.76 15.18 6.66 0.10 -31.66 16 14 C -0.23 -10.29 4.97 -19.99 -0.10 -10.39 16 15 C -0.03 -1.06 7.74 22.52 0.17 -0.88 16 16 C -0.19 -5.22 10.03 22.25 0.22 -4.99 16 17 C -0.04 -1.40 10.03 22.30 0.22 -1.18 16 18 C -0.25 -10.96 9.16 22.36 0.20 -10.75 16 19 C 0.15 7.61 6.63 22.91 0.15 7.76 16 20 O -0.21 -13.59 8.74 -9.30 -0.08 -13.67 16 21 C -0.42 -25.86 9.49 67.93 0.64 -25.21 16 22 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 23 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 24 N -0.91 -60.22 13.67 21.62 0.30 -59.93 16 25 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 26 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.40 7.62 -2.39 -0.02 1.38 16 33 H 0.03 1.01 5.85 -2.39 -0.01 1.00 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.52 7.51 -2.39 -0.02 1.50 16 37 H 0.10 1.78 8.00 -2.39 -0.02 1.76 16 38 H 0.43 5.86 9.10 -74.05 -0.67 5.19 16 39 H 0.09 1.66 6.97 -2.39 -0.02 1.65 16 40 H 0.06 1.92 6.25 -2.39 -0.01 1.90 16 41 H 0.08 1.93 6.45 -2.38 -0.02 1.92 16 42 H 0.16 3.60 6.11 -2.91 -0.02 3.58 16 43 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 44 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 46 H 0.27 16.40 8.31 -92.70 -0.77 15.63 16 Total: -1.00 -91.88 376.72 6.34 -85.54 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.35 Total: 32.39 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.57 Total: -5.34 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.29 Total: -82.26 kcal Atomic # 8 Polarization: -76.86 SS G_CDS: -0.32 Total: -77.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -91.88 6.34 -85.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591423582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.802 kcal (2) G-P(sol) polarization free energy of solvation -91.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds