Wall clock time and date at job start Tue Mar 31 2020 18:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46919 * 2 1 4 4 C 1.50705 * 109.46978 * 240.00363 * 2 1 3 5 5 C 1.38269 * 119.94189 * 59.72698 * 4 2 1 6 6 C 1.38149 * 120.04864 * 179.72447 * 5 4 2 7 7 C 1.38733 * 119.94488 * 0.57008 * 6 5 4 8 8 O 1.35895 * 120.05430 * 179.68506 * 7 6 5 9 9 C 1.42903 * 116.99987 * 0.02562 * 8 7 6 10 10 C 1.50707 * 109.46840 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99418 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00220 * 359.97438 * 12 10 9 14 14 H 1.07998 * 120.00165 * 8.07941 * 13 12 10 15 15 C 1.38959 * 119.99690 * 188.08020 * 13 12 10 16 16 N 1.31412 * 120.00029 * 26.13785 * 15 13 12 17 17 Si 1.86802 * 119.99695 * 206.13466 * 15 13 12 18 18 H 1.48498 * 109.47388 * 84.98822 * 17 15 13 19 19 H 1.48495 * 109.46875 * 204.98767 * 17 15 13 20 20 H 1.48508 * 109.46969 * 324.98581 * 17 15 13 21 21 C 1.46500 * 119.99784 * 179.97438 * 12 10 9 22 22 C 1.52999 * 109.47082 * 83.24117 * 21 12 10 23 23 C 1.50698 * 109.47374 * 180.02562 * 22 21 12 24 24 O 1.20829 * 119.99659 * 0.02562 * 23 22 21 25 25 O 1.34225 * 120.00467 * 180.02562 * 23 22 21 26 26 C 1.38727 * 119.88864 * 359.70009 * 7 6 5 27 27 C 1.38146 * 119.94538 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47168 * 299.99610 * 1 2 3 30 30 H 1.09000 * 109.47307 * 59.99876 * 1 2 3 31 31 H 1.08991 * 109.47162 * 120.00290 * 2 1 3 32 32 H 1.09000 * 109.47232 * 300.00170 * 3 2 1 33 33 H 1.08997 * 109.46882 * 60.00215 * 3 2 1 34 34 H 1.09001 * 109.46816 * 180.02562 * 3 2 1 35 35 H 1.07995 * 119.97599 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.02173 * 180.25084 * 6 5 4 37 37 H 1.09008 * 109.47073 * 299.99859 * 9 8 7 38 38 H 1.08993 * 109.47199 * 60.00446 * 9 8 7 39 39 H 0.96996 * 119.99609 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47450 * 203.24298 * 21 12 10 41 41 H 1.08998 * 109.47012 * 323.24852 * 21 12 10 42 42 H 1.09000 * 109.47482 * 300.00501 * 22 21 12 43 43 H 1.09000 * 109.47034 * 60.00209 * 22 21 12 44 44 H 0.96700 * 117.00703 * 179.97438 * 25 23 22 45 45 H 1.08003 * 120.02913 * 179.97438 * 26 7 6 46 46 H 1.08001 * 119.97115 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.6929 -0.2401 -2.4858 6 6 2.1568 -0.8863 -3.6153 7 6 2.9541 -2.0146 -3.4894 8 8 3.4063 -2.6557 -4.5990 9 6 3.0225 -2.1124 -5.8638 10 6 3.6123 -2.9493 -6.9697 11 8 4.2945 -3.9155 -6.7012 12 7 3.3824 -2.6234 -8.2571 13 6 2.6117 -1.5310 -8.5606 14 1 2.2973 -0.8575 -7.7771 15 6 2.2350 -1.2905 -9.8764 16 7 2.1456 -2.2880 -10.7271 17 14 1.8556 0.4510 -10.4357 18 1 3.1170 1.1329 -10.8217 19 1 0.9392 0.4072 -11.6034 20 1 1.2088 1.1973 -9.3265 21 6 3.9561 -3.4366 -9.3322 22 6 3.0572 -4.6473 -9.5912 23 6 3.6477 -5.4841 -10.6967 24 8 4.6817 -5.1470 -11.2231 25 8 3.0250 -6.6039 -11.0966 26 6 3.2885 -2.4876 -2.2288 27 6 2.8268 -1.8346 -1.1024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.0679 0.6352 -2.5832 36 1 1.8947 -0.5162 -4.5955 37 1 1.9356 -2.1161 -5.9460 38 1 3.3898 -1.0896 -5.9464 39 1 1.8823 -2.1201 -11.6454 40 1 4.0304 -2.8383 -10.2403 41 1 4.9492 -3.7775 -9.0395 42 1 2.9829 -5.2456 -8.6832 43 1 2.0641 -4.3064 -9.8839 44 1 3.4417 -7.1074 -11.8093 45 1 3.9087 -3.3660 -2.1282 46 1 3.0866 -2.2027 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591973645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:13 Heat of formation + Delta-G solvation = -141.448472 kcal Electronic energy + Delta-G solvation = -28521.631153 eV Core-core repulsion = 24376.751002 eV Total energy + Delta-G solvation = -4144.880151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10766 -39.62866 -38.74968 -37.60137 -35.63343 -35.12886 -34.64194 -31.82032 -31.11961 -30.83097 -29.16519 -27.38877 -27.28833 -25.29347 -23.80764 -23.23356 -22.13433 -20.40976 -20.01112 -19.33368 -18.03781 -17.68793 -17.17520 -16.15750 -15.91204 -15.68389 -15.56489 -15.31507 -15.16759 -14.54121 -14.44958 -14.18814 -13.98121 -13.79257 -13.46361 -13.27768 -13.12618 -12.77738 -12.61358 -12.47257 -12.39947 -12.13895 -11.98301 -11.61393 -11.50992 -11.30329 -11.19723 -11.11724 -10.94358 -10.84059 -10.68594 -10.58034 -10.49495 -10.45571 -10.02961 -9.88593 -9.18520 -8.88725 -8.59809 -8.09375 -7.85995 -6.66746 -4.10519 1.45928 1.55885 2.92306 2.98648 3.10844 3.12866 3.29788 3.57013 3.80631 3.86947 3.95381 4.61367 4.68082 4.75446 4.82288 5.00160 5.06984 5.10822 5.33281 5.40634 5.45743 5.50069 5.60819 5.67220 5.75452 5.77376 5.79013 5.84160 5.86465 5.88951 6.08227 6.08491 6.15212 6.20055 6.34239 6.42778 6.53979 6.57405 6.70995 6.90286 6.94690 7.06062 7.14602 7.29452 7.45962 7.72246 8.15531 8.52437 8.83183 9.24488 9.65524 10.35442 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002705 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.634922 B =10347.346848 C =11854.711506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.073 4.073 6 C -0.209 4.209 7 C 0.138 3.862 8 O -0.292 6.292 9 C 0.061 3.939 10 C 0.456 3.544 11 O -0.586 6.586 12 N -0.435 5.435 13 C -0.352 4.352 14 H 0.102 0.898 15 C 0.045 3.955 16 N -0.854 5.854 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.154 3.846 22 C -0.112 4.112 23 C 0.492 3.508 24 O -0.529 6.529 25 O -0.525 6.525 26 C -0.154 4.154 27 C -0.080 4.080 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.275 0.725 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.397 0.603 45 H 0.129 0.871 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 3.790 12.531 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.228 4.228 7 C 0.091 3.909 8 O -0.203 6.203 9 C -0.017 4.017 10 C 0.243 3.757 11 O -0.471 6.471 12 N -0.154 5.154 13 C -0.478 4.478 14 H 0.120 0.880 15 C -0.161 4.161 16 N -0.491 5.491 17 Si 0.745 3.255 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.030 3.970 22 C -0.150 4.150 23 C 0.336 3.664 24 O -0.417 6.417 25 O -0.336 6.336 26 C -0.172 4.172 27 C -0.098 4.098 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.154 0.846 44 H 0.254 0.746 45 H 0.147 0.853 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.645 3.439 12.587 13.548 hybrid contribution -0.220 0.718 -1.152 1.375 sum -3.865 4.157 11.435 12.766 Atomic orbital electron populations 1.21868 0.94682 1.01960 1.01659 1.20010 0.95654 0.95786 0.95358 1.21868 1.01252 0.95382 1.01654 1.19668 1.01198 0.97456 0.94484 1.20711 0.98248 0.98836 0.91361 1.21363 1.03285 0.98084 1.00082 1.19175 0.93000 0.91276 0.87455 1.86157 1.69845 1.52003 1.12336 1.22440 1.00461 0.97704 0.81123 1.19458 0.86034 0.86729 0.83436 1.90591 1.43305 1.30133 1.83070 1.43674 1.43788 1.25080 1.02870 1.19644 1.31683 1.01828 0.94648 0.88004 1.25165 0.95821 0.99118 0.96009 1.69979 1.42458 1.30389 1.06232 0.86071 0.78486 0.82329 0.78592 1.19979 1.20826 1.19392 1.21016 0.93044 0.90879 0.92024 1.21794 1.04722 0.94965 0.93551 1.23876 0.81686 0.77993 0.82878 1.90635 1.24522 1.70309 1.56271 1.84608 1.56349 1.37867 1.54805 1.20419 1.04664 1.02639 0.89510 1.20784 0.96689 0.94653 0.97648 0.92551 0.92715 0.92494 0.90803 0.92502 0.92715 0.92564 0.86186 0.85140 0.89808 0.90147 0.91475 0.87315 0.92968 0.89778 0.84638 0.74586 0.85265 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.00 37.16 0.33 -0.85 16 2 C -0.05 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.18 9.01 37.16 0.33 -0.85 16 4 C -0.13 -1.47 4.78 -104.60 -0.50 -1.97 16 5 C -0.07 -0.91 8.70 -39.60 -0.34 -1.25 16 6 C -0.21 -3.04 9.04 -39.43 -0.36 -3.40 16 7 C 0.14 2.28 6.69 -39.22 -0.26 2.01 16 8 O -0.29 -5.79 9.67 -39.32 -0.38 -6.17 16 9 C 0.06 1.18 3.61 36.01 0.13 1.31 16 10 C 0.46 10.76 7.66 -10.98 -0.08 10.67 16 11 O -0.59 -15.54 16.19 -14.35 -0.23 -15.77 16 12 N -0.43 -10.32 2.64 -114.81 -0.30 -10.62 16 13 C -0.35 -8.08 9.25 -14.93 -0.14 -8.22 16 14 H 0.10 2.16 6.47 -52.49 -0.34 1.82 16 15 C 0.05 1.03 4.88 -17.46 -0.09 0.94 16 16 N -0.85 -20.00 8.73 55.50 0.48 -19.52 16 17 Si 0.92 17.95 29.63 -169.99 -5.04 12.92 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 C 0.15 3.65 3.81 -4.04 -0.02 3.63 16 22 C -0.11 -2.43 5.61 -27.88 -0.16 -2.58 16 23 C 0.49 9.92 8.33 36.00 0.30 10.22 16 24 O -0.53 -11.82 16.74 -18.75 -0.31 -12.14 16 25 O -0.53 -8.55 13.42 -39.24 -0.53 -9.07 16 26 C -0.15 -2.23 9.99 -39.43 -0.39 -2.62 16 27 C -0.08 -0.96 9.66 -39.61 -0.38 -1.34 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 31 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.06 0.47 7.40 -51.93 -0.38 0.09 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 1.25 7.09 -52.49 -0.37 0.88 16 36 H 0.13 1.81 6.30 -52.48 -0.33 1.48 16 37 H 0.08 1.52 7.53 -51.92 -0.39 1.13 16 38 H 0.08 1.44 7.31 -51.93 -0.38 1.06 16 39 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 40 H 0.11 2.73 5.77 -51.93 -0.30 2.43 16 41 H 0.05 1.29 7.59 -51.93 -0.39 0.89 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.14 3.08 6.42 -51.93 -0.33 2.74 16 44 H 0.40 4.42 9.10 45.56 0.41 4.84 16 45 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 46 H 0.12 1.17 7.94 -52.49 -0.42 0.75 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -29.44 382.69 -8.14 -37.58 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.69 Total: 12.06 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.90 Total: 4.98 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.18 Total: -30.14 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.45 Total: -43.16 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.04 Total: 12.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.44 -8.14 -37.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591973645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.871 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds