Wall clock time and date at job start Tue Mar 31 2020 18:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46919 * 2 1 4 4 C 1.50705 * 109.46978 * 240.00363 * 2 1 3 5 5 C 1.38269 * 119.94189 * 59.72698 * 4 2 1 6 6 C 1.38149 * 120.04864 * 179.72447 * 5 4 2 7 7 C 1.38733 * 119.94488 * 0.57008 * 6 5 4 8 8 O 1.35895 * 120.05430 * 179.68506 * 7 6 5 9 9 C 1.42903 * 116.99987 * 0.02562 * 8 7 6 10 10 C 1.50707 * 109.46840 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99418 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00220 * 359.97438 * 12 10 9 14 14 H 1.07998 * 120.00165 * 8.07941 * 13 12 10 15 15 C 1.38959 * 119.99690 * 188.08020 * 13 12 10 16 16 N 1.31412 * 120.00029 * 26.13785 * 15 13 12 17 17 Si 1.86802 * 119.99695 * 206.13466 * 15 13 12 18 18 H 1.48498 * 109.47388 * 84.98822 * 17 15 13 19 19 H 1.48495 * 109.46875 * 204.98767 * 17 15 13 20 20 H 1.48508 * 109.46969 * 324.98581 * 17 15 13 21 21 C 1.46500 * 119.99784 * 179.97438 * 12 10 9 22 22 C 1.52999 * 109.47082 * 83.24117 * 21 12 10 23 23 C 1.50698 * 109.47374 * 180.02562 * 22 21 12 24 24 O 1.20829 * 119.99659 * 0.02562 * 23 22 21 25 25 O 1.34225 * 120.00467 * 180.02562 * 23 22 21 26 26 C 1.38727 * 119.88864 * 359.70009 * 7 6 5 27 27 C 1.38146 * 119.94538 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47168 * 299.99610 * 1 2 3 30 30 H 1.09000 * 109.47307 * 59.99876 * 1 2 3 31 31 H 1.08991 * 109.47162 * 120.00290 * 2 1 3 32 32 H 1.09000 * 109.47232 * 300.00170 * 3 2 1 33 33 H 1.08997 * 109.46882 * 60.00215 * 3 2 1 34 34 H 1.09001 * 109.46816 * 180.02562 * 3 2 1 35 35 H 1.07995 * 119.97599 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.02173 * 180.25084 * 6 5 4 37 37 H 1.09008 * 109.47073 * 299.99859 * 9 8 7 38 38 H 1.08993 * 109.47199 * 60.00446 * 9 8 7 39 39 H 0.96996 * 119.99609 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47450 * 203.24298 * 21 12 10 41 41 H 1.08998 * 109.47012 * 323.24852 * 21 12 10 42 42 H 1.09000 * 109.47482 * 300.00501 * 22 21 12 43 43 H 1.09000 * 109.47034 * 60.00209 * 22 21 12 44 44 H 0.96700 * 117.00703 * 179.97438 * 25 23 22 45 45 H 1.08003 * 120.02913 * 179.97438 * 26 7 6 46 46 H 1.08001 * 119.97115 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.6929 -0.2401 -2.4858 6 6 2.1568 -0.8863 -3.6153 7 6 2.9541 -2.0146 -3.4894 8 8 3.4063 -2.6557 -4.5990 9 6 3.0225 -2.1124 -5.8638 10 6 3.6123 -2.9493 -6.9697 11 8 4.2945 -3.9155 -6.7012 12 7 3.3824 -2.6234 -8.2571 13 6 2.6117 -1.5310 -8.5606 14 1 2.2973 -0.8575 -7.7771 15 6 2.2350 -1.2905 -9.8764 16 7 2.1456 -2.2880 -10.7271 17 14 1.8556 0.4510 -10.4357 18 1 3.1170 1.1329 -10.8217 19 1 0.9392 0.4072 -11.6034 20 1 1.2088 1.1973 -9.3265 21 6 3.9561 -3.4366 -9.3322 22 6 3.0572 -4.6473 -9.5912 23 6 3.6477 -5.4841 -10.6967 24 8 4.6817 -5.1470 -11.2231 25 8 3.0250 -6.6039 -11.0966 26 6 3.2885 -2.4876 -2.2288 27 6 2.8268 -1.8346 -1.1024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.0679 0.6352 -2.5832 36 1 1.8947 -0.5162 -4.5955 37 1 1.9356 -2.1161 -5.9460 38 1 3.3898 -1.0896 -5.9464 39 1 1.8823 -2.1201 -11.6454 40 1 4.0304 -2.8383 -10.2403 41 1 4.9492 -3.7775 -9.0395 42 1 2.9829 -5.2456 -8.6832 43 1 2.0641 -4.3064 -9.8839 44 1 3.4417 -7.1074 -11.8093 45 1 3.9087 -3.3660 -2.1282 46 1 3.0866 -2.2027 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591973645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:12 Heat of formation + Delta-G solvation = -156.705941 kcal Electronic energy + Delta-G solvation = -28522.292767 eV Core-core repulsion = 24376.751002 eV Total energy + Delta-G solvation = -4145.541765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45206 -41.16378 -40.32841 -38.86927 -37.22909 -36.85845 -35.58921 -33.63392 -32.81034 -31.95624 -30.34027 -28.79087 -27.89730 -27.08839 -25.47738 -24.20366 -23.27695 -22.01494 -21.13200 -20.87867 -19.42171 -19.26003 -18.76866 -17.83674 -17.35595 -17.11114 -17.05133 -16.81739 -16.30412 -16.09975 -15.90685 -15.35621 -15.29076 -15.04321 -14.60216 -14.38474 -14.29602 -14.17082 -14.05981 -13.87316 -13.45290 -13.40750 -13.20463 -13.15468 -12.91577 -12.81048 -12.51246 -12.38995 -12.11980 -12.10652 -12.05048 -11.87283 -11.64677 -11.63159 -11.58093 -11.41832 -11.00575 -10.45289 -9.93728 -9.91728 -8.98511 -8.42833 -5.92671 0.42721 0.49275 1.27778 1.39346 1.52157 1.60977 1.77113 1.90572 2.28765 2.33121 2.82685 3.00934 3.16534 3.81066 3.85509 3.97709 4.02220 4.11912 4.19178 4.23825 4.29773 4.39413 4.41209 4.47315 4.54284 4.59610 4.64389 4.75574 4.79903 4.88501 5.01683 5.07300 5.13505 5.17787 5.18349 5.21681 5.39564 5.42994 5.46718 5.47005 5.49943 5.60201 5.66427 5.77204 5.90437 6.31561 6.50002 7.02486 7.06518 7.42557 7.83877 8.59635 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002705 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.634922 B =10347.346848 C =11854.711506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.119 4.119 5 C -0.075 4.075 6 C -0.215 4.215 7 C 0.101 3.899 8 O -0.322 6.322 9 C 0.076 3.924 10 C 0.439 3.561 11 O -0.627 6.627 12 N -0.438 5.438 13 C -0.371 4.371 14 H 0.120 0.880 15 C 0.010 3.990 16 N -0.872 5.872 17 Si 0.985 3.015 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.158 3.842 22 C -0.102 4.102 23 C 0.502 3.498 24 O -0.553 6.553 25 O -0.511 6.511 26 C -0.166 4.166 27 C -0.078 4.078 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.276 0.724 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.128 0.872 44 H 0.424 0.576 45 H 0.127 0.873 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 5.527 13.968 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.119 4.119 5 C -0.093 4.093 6 C -0.234 4.234 7 C 0.056 3.944 8 O -0.235 6.235 9 C -0.002 4.002 10 C 0.229 3.771 11 O -0.515 6.515 12 N -0.156 5.156 13 C -0.497 4.497 14 H 0.137 0.863 15 C -0.195 4.195 16 N -0.509 5.509 17 Si 0.809 3.191 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.178 1.178 21 C 0.034 3.966 22 C -0.141 4.141 23 C 0.346 3.654 24 O -0.445 6.445 25 O -0.324 6.324 26 C -0.185 4.185 27 C -0.095 4.095 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.146 0.854 44 H 0.285 0.715 45 H 0.145 0.855 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.262 5.165 14.022 15.843 hybrid contribution 0.235 0.131 -1.555 1.578 sum -5.027 5.296 12.467 14.448 Atomic orbital electron populations 1.21865 0.93922 1.01853 1.02463 1.20090 0.96198 0.96082 0.94321 1.21865 1.00909 0.94855 1.02458 1.20082 0.99655 0.96791 0.95400 1.20995 0.98062 0.99225 0.91026 1.21475 1.03144 0.97674 1.01123 1.19488 0.95209 0.92815 0.86930 1.86092 1.71104 1.53366 1.12984 1.22199 1.00584 0.97125 0.80256 1.20163 0.85883 0.86904 0.84193 1.90543 1.45206 1.32014 1.83724 1.43878 1.43458 1.25258 1.03054 1.20083 1.32066 1.01958 0.95608 0.86291 1.25968 0.95425 1.02254 0.95804 1.70056 1.42523 1.31943 1.06381 0.85064 0.77826 0.77975 0.78284 1.20629 1.20964 1.17817 1.20851 0.92709 0.91513 0.91511 1.21529 1.03838 0.94552 0.94152 1.23404 0.81134 0.78630 0.82247 1.90630 1.25546 1.71257 1.57028 1.84518 1.55715 1.36489 1.55719 1.20626 1.05090 1.03053 0.89725 1.21122 0.95980 0.94428 0.98006 0.93128 0.91030 0.92658 0.89495 0.92664 0.91033 0.93127 0.83992 0.84890 0.88647 0.88700 0.91398 0.88677 0.94978 0.90292 0.85384 0.71480 0.85547 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.00 71.98 0.65 -1.26 16 2 C -0.05 -0.71 3.09 -11.54 -0.04 -0.75 16 3 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 4 C -0.12 -2.46 4.78 -19.85 -0.09 -2.56 16 5 C -0.08 -1.72 8.70 22.26 0.19 -1.53 16 6 C -0.22 -6.13 9.04 22.37 0.20 -5.93 16 7 C 0.10 3.38 6.69 22.51 0.15 3.53 16 8 O -0.32 -13.28 9.67 -73.34 -0.71 -13.99 16 9 C 0.08 3.03 3.61 71.24 0.26 3.29 16 10 C 0.44 21.50 7.66 87.66 0.67 22.17 16 11 O -0.63 -34.89 16.19 16.01 0.26 -34.63 16 12 N -0.44 -21.40 2.64 -635.55 -1.68 -23.08 16 13 C -0.37 -17.10 9.25 84.04 0.78 -16.32 16 14 H 0.12 4.94 6.47 -2.91 -0.02 4.92 16 15 C 0.01 0.46 4.88 84.93 0.41 0.87 16 16 N -0.87 -41.03 8.73 21.67 0.19 -40.84 16 17 Si 0.98 36.05 29.63 68.60 2.03 38.08 16 18 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 21 C 0.16 7.79 3.81 86.38 0.33 8.12 16 22 C -0.10 -4.56 5.61 29.85 0.17 -4.39 16 23 C 0.50 20.32 8.33 71.24 0.59 20.91 16 24 O -0.55 -25.03 16.74 21.95 0.37 -24.66 16 25 O -0.51 -15.96 13.42 -51.37 -0.69 -16.65 16 26 C -0.17 -4.83 9.99 22.36 0.22 -4.61 16 27 C -0.08 -1.73 9.66 22.25 0.22 -1.52 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.75 7.37 -2.39 -0.02 0.73 16 31 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 32 H 0.05 0.75 7.40 -2.39 -0.02 0.73 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 2.57 7.09 -2.91 -0.02 2.55 16 36 H 0.13 3.60 6.30 -2.91 -0.02 3.58 16 37 H 0.10 3.49 7.53 -2.38 -0.02 3.48 16 38 H 0.10 3.42 7.31 -2.39 -0.02 3.40 16 39 H 0.28 12.41 8.31 -92.71 -0.77 11.64 16 40 H 0.10 4.94 5.77 -2.39 -0.01 4.92 16 41 H 0.03 1.67 7.59 -2.39 -0.02 1.65 16 42 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 43 H 0.13 5.94 6.42 -2.39 -0.02 5.92 16 44 H 0.42 8.54 9.10 -74.06 -0.67 7.87 16 45 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 46 H 0.15 2.45 7.94 -2.91 -0.02 2.43 16 Total: -1.00 -65.07 382.69 5.47 -59.60 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.34 Total: 37.37 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.36 Total: 18.80 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -1.49 Total: -63.92 kcal Atomic # 8 Polarization: -89.16 SS G_CDS: -0.77 Total: -89.93 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -65.07 5.47 -59.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591973645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.109 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds