Wall clock time and date at job start Tue Mar 31 2020 18:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47372 * 2 1 4 4 C 1.50706 * 109.46684 * 119.99744 * 2 1 3 5 5 C 1.38164 * 120.02609 * 299.99694 * 4 2 1 6 6 C 1.38243 * 120.05534 * 179.97438 * 5 4 2 7 7 C 1.38289 * 120.11365 * 359.97438 * 6 5 4 8 8 C 1.38121 * 120.05103 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.03108 * 119.95899 * 4 2 1 10 10 O 1.35904 * 120.05292 * 0.04191 * 9 4 2 11 11 C 1.42901 * 116.99987 * 179.97438 * 10 9 4 12 12 C 1.53001 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47242 * 180.02562 * 12 11 10 14 14 O 1.21301 * 119.99967 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00101 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99998 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99856 * 16.25577 * 16 15 13 18 18 C 1.38949 * 120.00104 * 196.25444 * 16 15 13 19 19 N 1.31417 * 119.99604 * 21.13718 * 18 16 15 20 20 Si 1.86799 * 120.00028 * 201.14127 * 18 16 15 21 21 H 1.48497 * 109.47332 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47097 * 120.00185 * 20 18 16 23 23 H 1.48498 * 109.46794 * 239.99725 * 20 18 16 24 24 C 1.46500 * 120.00012 * 359.97438 * 15 13 12 25 25 C 1.50695 * 109.47017 * 84.15058 * 24 15 13 26 26 O 1.20822 * 120.00176 * 359.97438 * 25 24 15 27 27 O 1.34229 * 120.00211 * 180.02562 * 25 24 15 28 28 H 1.08994 * 109.47323 * 300.00584 * 1 2 3 29 29 H 1.09004 * 109.46616 * 60.00682 * 1 2 3 30 30 H 1.08995 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47323 * 239.99415 * 2 1 3 32 32 H 1.09004 * 109.47303 * 59.99526 * 3 2 1 33 33 H 1.08999 * 109.47709 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46898 * 299.99699 * 3 2 1 35 35 H 1.08002 * 119.97210 * 359.97438 * 5 4 2 36 36 H 1.08002 * 119.94724 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.97498 * 180.02562 * 7 6 5 38 38 H 1.08001 * 120.02709 * 179.72854 * 8 7 6 39 39 H 1.08997 * 109.47099 * 299.99768 * 11 10 9 40 40 H 1.08998 * 109.46898 * 59.99928 * 11 10 9 41 41 H 1.09001 * 109.46902 * 300.00366 * 12 11 10 42 42 H 1.09004 * 109.47253 * 59.99706 * 12 11 10 43 43 H 0.96998 * 119.99514 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46818 * 204.14850 * 24 15 13 45 45 H 1.08996 * 109.46865 * 324.14684 * 24 15 13 46 46 H 0.96701 * 117.00478 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6988 -0.2387 2.4857 6 6 2.1587 -0.8902 3.6149 7 6 2.9530 -2.0155 3.4915 8 6 3.2882 -2.4916 2.2391 9 6 2.8290 -1.8388 1.1042 10 8 3.1584 -2.3046 -0.1293 11 6 3.9826 -3.4708 -0.1836 12 6 4.2458 -3.8418 -1.6444 13 6 5.1143 -5.0719 -1.7016 14 8 5.4867 -5.5997 -0.6749 15 7 5.4783 -5.5850 -2.8935 16 6 6.2689 -6.7039 -2.9456 17 1 6.3855 -7.3240 -2.0690 18 6 6.9203 -7.0400 -4.1260 19 7 7.1329 -6.1231 -5.0432 20 14 7.4936 -8.7952 -4.4093 21 1 7.1363 -9.6285 -3.2333 22 1 6.8342 -9.3415 -5.6225 23 1 8.9665 -8.8105 -4.5972 24 6 5.0291 -4.9471 -4.1336 25 6 5.9586 -3.8128 -4.4802 26 8 6.8994 -3.5625 -3.7647 27 8 5.7407 -3.0798 -5.5834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.0783 0.6397 2.5847 36 1 1.8966 -0.5202 4.5951 37 1 3.3107 -2.5230 4.3752 38 1 3.9122 -3.3679 2.1432 39 1 4.9301 -3.2696 0.3162 40 1 3.4765 -4.2969 0.3160 41 1 3.2984 -4.0427 -2.1446 42 1 4.7520 -3.0155 -2.1436 43 1 7.5873 -6.3579 -5.8674 44 1 5.0328 -5.6795 -4.9408 45 1 4.0189 -4.5608 -3.9981 46 1 6.3637 -2.3625 -5.7641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591999170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:44 Heat of formation + Delta-G solvation = -141.261212 kcal Electronic energy + Delta-G solvation = -29213.564710 eV Core-core repulsion = 25068.692679 eV Total energy + Delta-G solvation = -4144.872031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.32835 -39.52734 -38.34342 -37.47326 -35.38604 -35.34476 -34.59448 -32.12321 -31.32546 -30.09133 -29.18162 -27.75407 -27.20555 -25.55598 -24.00633 -22.99102 -21.72648 -21.15327 -20.06510 -18.87241 -18.05882 -17.25640 -16.97315 -16.46303 -16.11692 -15.86583 -15.60284 -15.55422 -14.71277 -14.51908 -14.32307 -14.26910 -14.04262 -13.97093 -13.89620 -13.34823 -13.09209 -12.61865 -12.54820 -12.30051 -12.12590 -12.01665 -11.78375 -11.73018 -11.66431 -11.48095 -11.27088 -11.20381 -10.99394 -10.66551 -10.55510 -10.49332 -10.43969 -10.38415 -10.33066 -9.72172 -9.12513 -8.83794 -8.67719 -8.06799 -8.01108 -6.53148 -3.97606 1.32079 1.47268 3.07028 3.17621 3.22773 3.30200 3.38294 3.56239 3.76185 4.01932 4.18087 4.59976 4.68516 4.77690 4.97384 4.98588 5.07691 5.15753 5.15883 5.26225 5.31218 5.35666 5.48299 5.52068 5.53087 5.65320 5.73364 5.73607 5.76885 5.89746 5.93273 6.05130 6.09174 6.14735 6.17973 6.18405 6.38977 6.41395 6.51399 6.51868 6.55718 6.82937 7.43142 7.47865 7.53786 7.87258 8.26679 8.95575 8.99028 9.20856 9.71573 10.55698 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002846 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.961787 B = 9837.473632 C =10991.830156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.163 4.163 7 C -0.085 4.085 8 C -0.205 4.205 9 C 0.140 3.860 10 O -0.316 6.316 11 C 0.081 3.919 12 C -0.133 4.133 13 C 0.464 3.536 14 O -0.578 6.578 15 N -0.427 5.427 16 C -0.306 4.306 17 H 0.110 0.890 18 C 0.030 3.970 19 N -0.881 5.881 20 Si 0.930 3.070 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.143 3.857 25 C 0.490 3.510 26 O -0.504 6.504 27 O -0.534 6.534 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.271 0.729 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 11.779 6.068 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.181 4.181 7 C -0.103 4.103 8 C -0.224 4.224 9 C 0.094 3.906 10 O -0.230 6.230 11 C 0.006 3.994 12 C -0.173 4.173 13 C 0.253 3.747 14 O -0.462 6.462 15 N -0.147 5.147 16 C -0.433 4.433 17 H 0.127 0.873 18 C -0.173 4.173 19 N -0.520 5.520 20 Si 0.757 3.243 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.208 1.208 24 C 0.016 3.984 25 C 0.330 3.670 26 O -0.390 6.390 27 O -0.345 6.345 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.097 0.903 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.067 11.302 6.480 17.758 hybrid contribution 1.184 -0.418 -0.421 1.324 sum -10.883 10.884 6.060 16.542 Atomic orbital electron populations 1.21837 0.94606 1.01888 1.01470 1.19966 0.95513 0.95652 0.96015 1.21841 1.01333 0.95225 1.01463 1.19207 1.00899 0.95627 0.95568 1.20755 0.98902 0.99199 0.91123 1.20976 1.01313 0.97502 0.98353 1.20930 0.96807 0.95841 0.96704 1.21409 1.05419 1.03076 0.92504 1.18839 0.94371 0.93162 0.84190 1.85965 1.66447 1.44855 1.25724 1.22466 0.94025 0.85176 0.97713 1.21448 1.01169 0.98639 0.96085 1.19654 0.85270 0.85571 0.84248 1.90542 1.59867 1.62722 1.33060 1.43413 1.44478 1.24607 1.02171 1.19783 1.25094 0.99212 0.99214 0.87267 1.25256 0.95990 0.99728 0.96339 1.69805 1.40627 1.32128 1.09475 0.85801 0.78197 0.81851 0.78498 1.19095 1.20469 1.20836 1.20731 0.92840 0.93237 0.91557 1.23796 0.85503 0.80755 0.76968 1.90621 1.29746 1.67220 1.51366 1.84518 1.57339 1.46294 1.46311 0.92825 0.92514 0.92600 0.89447 0.92821 0.92583 0.92507 0.85839 0.86291 0.86025 0.84962 0.91210 0.91171 0.89246 0.89380 0.91824 0.85154 0.90263 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.01 37.16 0.33 -0.97 16 2 C -0.05 -0.59 3.06 -91.77 -0.28 -0.87 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 4 C -0.11 -1.42 4.79 -104.47 -0.50 -1.92 16 5 C -0.08 -0.89 8.71 -39.61 -0.34 -1.23 16 6 C -0.16 -1.74 10.04 -39.56 -0.40 -2.14 16 7 C -0.08 -1.00 10.04 -39.61 -0.40 -1.39 16 8 C -0.21 -2.85 9.04 -39.44 -0.36 -3.21 16 9 C 0.14 2.05 6.66 -39.22 -0.26 1.79 16 10 O -0.32 -5.01 8.90 -19.44 -0.17 -5.19 16 11 C 0.08 1.39 4.03 37.16 0.15 1.54 16 12 C -0.13 -2.44 4.68 -27.89 -0.13 -2.57 16 13 C 0.46 10.94 7.42 -10.99 -0.08 10.86 16 14 O -0.58 -15.38 15.62 5.54 0.09 -15.29 16 15 N -0.43 -10.48 2.18 -116.10 -0.25 -10.74 16 16 C -0.31 -8.22 9.35 -14.93 -0.14 -8.36 16 17 H 0.11 3.08 7.37 -52.48 -0.39 2.70 16 18 C 0.03 0.75 4.89 -17.47 -0.09 0.67 16 19 N -0.88 -22.61 9.25 55.50 0.51 -22.10 16 20 Si 0.93 20.09 29.60 -169.99 -5.03 15.05 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.14 3.00 4.97 -5.20 -0.03 2.98 16 25 C 0.49 10.59 5.87 36.00 0.21 10.81 16 26 O -0.50 -12.91 16.81 -18.75 -0.32 -13.22 16 27 O -0.53 -9.34 13.42 -39.26 -0.53 -9.86 16 28 H 0.05 0.44 7.39 -51.93 -0.38 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 32 H 0.05 0.45 7.39 -51.93 -0.38 0.07 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.12 1.06 7.10 -52.49 -0.37 0.69 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.13 1.87 6.30 -52.49 -0.33 1.53 16 39 H 0.07 1.26 7.62 -51.93 -0.40 0.86 16 40 H 0.07 1.18 7.62 -51.93 -0.40 0.79 16 41 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 42 H 0.09 1.63 7.52 -51.93 -0.39 1.24 16 43 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 44 H 0.13 2.85 6.34 -51.93 -0.33 2.52 16 45 H 0.08 1.33 6.69 -51.93 -0.35 0.99 16 46 H 0.39 5.27 9.10 45.56 0.41 5.68 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -32.70 380.51 -7.66 -40.36 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.72 Total: 10.29 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.97 Total: 4.96 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.26 Total: -32.83 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.93 Total: -43.56 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.70 -7.66 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591999170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.905 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds