Wall clock time and date at job start Tue Mar 31 2020 18:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47372 * 2 1 4 4 C 1.50706 * 109.46684 * 119.99744 * 2 1 3 5 5 C 1.38164 * 120.02609 * 299.99694 * 4 2 1 6 6 C 1.38243 * 120.05534 * 179.97438 * 5 4 2 7 7 C 1.38289 * 120.11365 * 359.97438 * 6 5 4 8 8 C 1.38121 * 120.05103 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.03108 * 119.95899 * 4 2 1 10 10 O 1.35904 * 120.05292 * 0.04191 * 9 4 2 11 11 C 1.42901 * 116.99987 * 179.97438 * 10 9 4 12 12 C 1.53001 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47242 * 180.02562 * 12 11 10 14 14 O 1.21301 * 119.99967 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00101 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99998 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99856 * 16.25577 * 16 15 13 18 18 C 1.38949 * 120.00104 * 196.25444 * 16 15 13 19 19 N 1.31417 * 119.99604 * 21.13718 * 18 16 15 20 20 Si 1.86799 * 120.00028 * 201.14127 * 18 16 15 21 21 H 1.48497 * 109.47332 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47097 * 120.00185 * 20 18 16 23 23 H 1.48498 * 109.46794 * 239.99725 * 20 18 16 24 24 C 1.46500 * 120.00012 * 359.97438 * 15 13 12 25 25 C 1.50695 * 109.47017 * 84.15058 * 24 15 13 26 26 O 1.20822 * 120.00176 * 359.97438 * 25 24 15 27 27 O 1.34229 * 120.00211 * 180.02562 * 25 24 15 28 28 H 1.08994 * 109.47323 * 300.00584 * 1 2 3 29 29 H 1.09004 * 109.46616 * 60.00682 * 1 2 3 30 30 H 1.08995 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47323 * 239.99415 * 2 1 3 32 32 H 1.09004 * 109.47303 * 59.99526 * 3 2 1 33 33 H 1.08999 * 109.47709 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46898 * 299.99699 * 3 2 1 35 35 H 1.08002 * 119.97210 * 359.97438 * 5 4 2 36 36 H 1.08002 * 119.94724 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.97498 * 180.02562 * 7 6 5 38 38 H 1.08001 * 120.02709 * 179.72854 * 8 7 6 39 39 H 1.08997 * 109.47099 * 299.99768 * 11 10 9 40 40 H 1.08998 * 109.46898 * 59.99928 * 11 10 9 41 41 H 1.09001 * 109.46902 * 300.00366 * 12 11 10 42 42 H 1.09004 * 109.47253 * 59.99706 * 12 11 10 43 43 H 0.96998 * 119.99514 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46818 * 204.14850 * 24 15 13 45 45 H 1.08996 * 109.46865 * 324.14684 * 24 15 13 46 46 H 0.96701 * 117.00478 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6988 -0.2387 2.4857 6 6 2.1587 -0.8902 3.6149 7 6 2.9530 -2.0155 3.4915 8 6 3.2882 -2.4916 2.2391 9 6 2.8290 -1.8388 1.1042 10 8 3.1584 -2.3046 -0.1293 11 6 3.9826 -3.4708 -0.1836 12 6 4.2458 -3.8418 -1.6444 13 6 5.1143 -5.0719 -1.7016 14 8 5.4867 -5.5997 -0.6749 15 7 5.4783 -5.5850 -2.8935 16 6 6.2689 -6.7039 -2.9456 17 1 6.3855 -7.3240 -2.0690 18 6 6.9203 -7.0400 -4.1260 19 7 7.1329 -6.1231 -5.0432 20 14 7.4936 -8.7952 -4.4093 21 1 7.1363 -9.6285 -3.2333 22 1 6.8342 -9.3415 -5.6225 23 1 8.9665 -8.8105 -4.5972 24 6 5.0291 -4.9471 -4.1336 25 6 5.9586 -3.8128 -4.4802 26 8 6.8994 -3.5625 -3.7647 27 8 5.7407 -3.0798 -5.5834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.0783 0.6397 2.5847 36 1 1.8966 -0.5202 4.5951 37 1 3.3107 -2.5230 4.3752 38 1 3.9122 -3.3679 2.1432 39 1 4.9301 -3.2696 0.3162 40 1 3.4765 -4.2969 0.3160 41 1 3.2984 -4.0427 -2.1446 42 1 4.7520 -3.0155 -2.1436 43 1 7.5873 -6.3579 -5.8674 44 1 5.0328 -5.6795 -4.9408 45 1 4.0189 -4.5608 -3.9981 46 1 6.3637 -2.3625 -5.7641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591999170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:43 Heat of formation + Delta-G solvation = -160.706934 kcal Electronic energy + Delta-G solvation = -29214.407940 eV Core-core repulsion = 25068.692679 eV Total energy + Delta-G solvation = -4145.715261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49068 -41.15785 -40.04395 -38.62918 -37.08364 -36.39965 -36.22819 -33.96249 -32.87797 -31.01890 -30.22874 -29.50619 -27.92541 -27.27763 -25.37797 -24.06841 -22.93234 -22.70487 -21.08444 -20.48170 -19.27914 -19.03512 -18.70138 -17.98828 -17.62620 -17.11841 -17.10341 -16.57320 -16.31837 -16.23466 -15.92786 -15.53795 -15.34322 -15.06758 -14.76311 -14.42823 -14.35428 -14.19487 -13.84804 -13.59274 -13.48302 -13.37473 -13.05772 -13.01053 -12.79353 -12.75136 -12.64893 -12.46610 -12.30995 -12.16841 -12.12241 -11.99698 -11.78021 -11.56889 -11.48438 -11.40024 -10.99486 -10.58543 -9.92749 -9.76565 -9.08339 -8.47699 -5.99753 0.38754 0.50564 1.32715 1.42301 1.56020 1.65752 1.79474 1.96520 2.29841 2.51258 2.82364 2.95834 3.11416 3.66234 3.72484 3.83620 3.88884 3.99106 4.14279 4.18290 4.23515 4.30787 4.38016 4.43757 4.51453 4.60201 4.64145 4.66443 4.75944 4.82583 4.86390 4.90274 4.95336 5.03656 5.15376 5.23491 5.33004 5.43069 5.44840 5.49300 5.60620 5.65741 5.89537 5.93416 5.95031 6.32291 6.41042 7.04302 7.24157 7.41882 7.83322 8.59228 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002846 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.961787 B = 9837.473632 C =10991.830156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.080 4.080 6 C -0.155 4.155 7 C -0.093 4.093 8 C -0.224 4.224 9 C 0.105 3.895 10 O -0.320 6.320 11 C 0.095 3.905 12 C -0.119 4.119 13 C 0.452 3.548 14 O -0.621 6.621 15 N -0.439 5.439 16 C -0.343 4.343 17 H 0.081 0.919 18 C 0.001 3.999 19 N -0.891 5.891 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.259 1.259 23 H -0.285 1.285 24 C 0.139 3.861 25 C 0.497 3.503 26 O -0.551 6.551 27 O -0.517 6.517 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.276 0.724 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.243 13.452 5.829 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.074 4.074 3 C -0.195 4.195 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.173 4.173 7 C -0.111 4.111 8 C -0.243 4.243 9 C 0.060 3.940 10 O -0.234 6.234 11 C 0.020 3.980 12 C -0.159 4.159 13 C 0.243 3.757 14 O -0.508 6.508 15 N -0.157 5.157 16 C -0.470 4.470 17 H 0.099 0.901 18 C -0.200 4.200 19 N -0.530 5.530 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.184 1.184 23 H -0.211 1.211 24 C 0.013 3.987 25 C 0.339 3.661 26 O -0.440 6.440 27 O -0.329 6.329 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.135 0.865 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -14.041 13.017 6.188 20.122 hybrid contribution 1.774 -0.829 -0.329 1.986 sum -12.267 12.188 5.859 18.258 Atomic orbital electron populations 1.21804 0.92983 1.01624 1.02901 1.20001 0.96816 0.96128 0.94439 1.21816 1.00326 0.94388 1.02941 1.19529 1.00233 0.94890 0.97123 1.21134 0.98570 0.99819 0.90260 1.21395 0.99627 0.96343 0.99888 1.21223 0.96986 0.96531 0.96359 1.21466 1.06066 1.03147 0.93638 1.19195 0.96368 0.94742 0.83719 1.85920 1.66407 1.44225 1.26887 1.22126 0.93442 0.85825 0.96643 1.21294 1.01426 0.95889 0.97247 1.20487 0.85294 0.86430 0.83517 1.90501 1.61529 1.64270 1.34460 1.43564 1.44094 1.24478 1.03603 1.19693 1.27387 1.00776 0.99188 0.90105 1.25976 0.95443 1.03079 0.95540 1.69879 1.40238 1.33302 1.09565 0.84888 0.77415 0.77357 0.78664 1.19699 1.18357 1.21097 1.20923 0.94840 0.92939 0.89969 1.23808 0.84552 0.80678 0.77021 1.90613 1.31656 1.68713 1.53050 1.84445 1.57691 1.46586 1.44183 0.91207 0.91276 0.93707 0.91657 0.91128 0.94143 0.91253 0.82821 0.83045 0.84173 0.86497 0.93233 0.91593 0.86004 0.89257 0.91410 0.85865 0.85797 0.72645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.01 71.98 0.65 -1.56 16 2 C -0.06 -1.15 3.06 -11.54 -0.04 -1.19 16 3 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 4 C -0.12 -2.83 4.79 -19.77 -0.09 -2.92 16 5 C -0.08 -1.52 8.71 22.25 0.19 -1.32 16 6 C -0.15 -2.86 10.04 22.28 0.22 -2.64 16 7 C -0.09 -2.10 10.04 22.25 0.22 -1.88 16 8 C -0.22 -6.44 9.04 22.36 0.20 -6.24 16 9 C 0.10 3.12 6.66 22.50 0.15 3.27 16 10 O -0.32 -10.47 8.90 -92.47 -0.82 -11.29 16 11 C 0.10 3.41 4.03 71.98 0.29 3.70 16 12 C -0.12 -4.40 4.68 29.85 0.14 -4.26 16 13 C 0.45 22.12 7.42 87.66 0.65 22.77 16 14 O -0.62 -34.94 15.62 -3.09 -0.05 -34.99 16 15 N -0.44 -22.03 2.18 -639.60 -1.39 -23.42 16 16 C -0.34 -19.09 9.35 84.04 0.79 -18.30 16 17 H 0.08 4.84 7.37 -2.91 -0.02 4.82 16 18 C 0.00 0.07 4.89 84.93 0.42 0.49 16 19 N -0.89 -45.58 9.25 21.66 0.20 -45.38 16 20 Si 0.99 41.45 29.60 68.60 2.03 43.48 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.75 4.97 85.63 0.43 6.18 16 25 C 0.50 21.19 5.87 71.23 0.42 21.61 16 26 O -0.55 -28.51 16.81 21.97 0.37 -28.14 16 27 O -0.52 -17.06 13.42 -51.41 -0.69 -17.75 16 28 H 0.07 0.90 7.39 -2.39 -0.02 0.89 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.63 6.99 -2.39 -0.02 1.62 16 32 H 0.07 0.96 7.39 -2.38 -0.02 0.94 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.15 1.96 7.10 -2.91 -0.02 1.94 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.12 3.60 6.30 -2.91 -0.02 3.58 16 39 H 0.05 1.94 7.62 -2.39 -0.02 1.92 16 40 H 0.07 2.37 7.62 -2.39 -0.02 2.36 16 41 H 0.12 3.68 7.42 -2.39 -0.02 3.66 16 42 H 0.09 3.32 7.52 -2.39 -0.02 3.30 16 43 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 44 H 0.12 5.31 6.34 -2.39 -0.02 5.29 16 45 H 0.12 3.92 6.69 -2.39 -0.02 3.91 16 46 H 0.41 10.22 9.10 -74.06 -0.67 9.54 16 Total: -1.00 -73.99 380.51 5.27 -68.73 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.34 Total: 32.78 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.28 Total: 15.99 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.19 Total: -68.80 kcal Atomic # 8 Polarization: -90.99 SS G_CDS: -1.19 Total: -92.18 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -73.99 5.27 -68.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591999170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.979 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds