Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47264 * 2 1 4 4 C 1.53002 * 109.47326 * 120.00102 * 2 1 3 5 5 C 1.53006 * 109.47052 * 297.75343 * 4 2 1 6 6 C 1.50693 * 109.46878 * 181.04357 * 5 4 2 7 7 C 1.38234 * 120.00056 * 90.00633 * 6 5 4 8 8 C 1.38241 * 120.00041 * 179.97438 * 7 6 5 9 9 C 1.38243 * 119.99613 * 359.94973 * 8 7 6 10 10 C 1.38233 * 119.99788 * 0.27896 * 9 8 7 11 11 C 1.38230 * 120.00241 * 359.51106 * 10 9 8 12 12 C 1.50709 * 109.47421 * 240.00126 * 2 1 3 13 13 O 1.21285 * 119.99924 * 260.93829 * 12 2 1 14 14 N 1.34775 * 119.99741 * 80.93614 * 12 2 1 15 15 C 1.37095 * 120.00160 * 4.19742 * 14 12 2 16 16 H 1.07992 * 120.00549 * 324.56021 * 15 14 12 17 17 C 1.38957 * 119.99625 * 144.55369 * 15 14 12 18 18 N 1.31414 * 119.99550 * 158.36958 * 17 15 14 19 19 Si 1.86796 * 120.00242 * 338.37540 * 17 15 14 20 20 H 1.48497 * 109.47287 * 95.09005 * 19 17 15 21 21 H 1.48499 * 109.47161 * 215.09639 * 19 17 15 22 22 H 1.48497 * 109.47055 * 335.09134 * 19 17 15 23 23 C 1.46496 * 119.99678 * 184.20313 * 14 12 2 24 24 C 1.52999 * 109.47464 * 89.99799 * 23 14 12 25 25 C 1.50705 * 109.47249 * 179.97438 * 24 23 14 26 26 O 1.20820 * 119.99993 * 0.02562 * 25 24 23 27 27 O 1.34226 * 119.99497 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47353 * 302.19841 * 1 2 3 29 29 H 1.09003 * 109.47182 * 62.20661 * 1 2 3 30 30 H 1.09010 * 109.46783 * 182.20111 * 1 2 3 31 31 H 0.96695 * 114.00584 * 182.78608 * 3 2 1 32 32 H 1.09005 * 109.47125 * 177.75814 * 4 2 1 33 33 H 1.08992 * 109.47151 * 57.75052 * 4 2 1 34 34 H 1.08996 * 109.46787 * 61.03986 * 5 4 2 35 35 H 1.09001 * 109.46825 * 301.04311 * 5 4 2 36 36 H 1.07999 * 119.99984 * 359.96716 * 7 6 5 37 37 H 1.07994 * 120.00352 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.99622 * 180.02562 * 9 8 7 39 39 H 1.08005 * 119.99659 * 179.72794 * 10 9 8 40 40 H 1.08006 * 119.99982 * 180.25310 * 11 10 9 41 41 H 0.96998 * 119.99310 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.47343 * 210.00024 * 23 14 12 43 43 H 1.09002 * 109.47484 * 329.99901 * 23 14 12 44 44 H 1.08993 * 109.47235 * 299.99986 * 24 23 14 45 45 H 1.09006 * 109.47037 * 59.99961 * 24 23 14 46 46 H 0.96707 * 116.99421 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5767 0.0319 2.4979 6 6 2.1006 -0.6641 3.7275 7 6 3.3294 -0.3093 4.2519 8 6 3.8097 -0.9474 5.3802 9 6 3.0606 -1.9397 5.9847 10 6 1.8339 -2.2977 5.4575 11 6 1.3517 -1.6566 4.3318 12 6 2.0324 -0.7104 -1.2305 13 8 2.3905 -1.8670 -1.1593 14 7 2.0837 -0.0605 -2.4101 15 6 1.7609 1.2704 -2.4740 16 1 0.9787 1.6673 -1.8440 17 6 2.4402 2.1088 -3.3496 18 7 1.8925 3.2396 -3.7344 19 14 4.1318 1.6282 -3.9796 20 1 3.9966 0.9526 -5.2950 21 1 4.9676 2.8461 -4.1321 22 1 4.7760 0.7039 -3.0123 23 6 2.4842 -0.7762 -3.6239 24 6 1.2460 -1.3715 -4.2971 25 6 1.6581 -2.1073 -5.5461 26 8 2.8227 -2.1514 -5.8648 27 8 0.7313 -2.7145 -6.3039 28 1 -0.3633 0.5475 0.8695 29 1 -0.3634 0.4792 -0.9091 30 1 -0.3633 -1.0270 0.0395 31 1 2.9693 1.4241 -0.0429 32 1 3.1293 -0.7562 1.2293 33 1 1.6442 -1.7366 1.2696 34 1 0.4873 0.0509 2.5274 35 1 1.9572 1.0529 2.4684 36 1 3.9142 0.4664 3.7800 37 1 4.7699 -0.6706 5.7897 38 1 3.4357 -2.4379 6.8664 39 1 1.2507 -3.0759 5.9272 40 1 0.3915 -1.9335 3.9223 41 1 2.3666 3.8246 -4.3459 42 1 2.9730 -0.0838 -4.3094 43 1 3.1758 -1.5770 -3.3620 44 1 0.7573 -2.0639 -3.6117 45 1 0.5544 -0.5707 -4.5590 46 1 1.0438 -3.1741 -7.0953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593387564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = -145.497984 kcal Electronic energy + Delta-G solvation = -29581.605833 eV Core-core repulsion = 25436.550081 eV Total energy + Delta-G solvation = -4145.055751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12619 -39.66933 -39.08276 -36.65022 -35.93539 -35.24774 -33.56548 -32.23043 -31.06525 -30.87754 -30.65241 -28.03497 -25.26627 -25.07080 -24.33914 -22.55603 -21.81211 -20.88959 -20.19198 -19.01684 -17.98312 -17.59731 -16.71266 -16.63290 -16.34089 -15.77456 -15.39140 -15.32818 -14.99779 -14.74783 -14.61425 -14.15742 -13.64899 -13.39645 -13.32365 -13.06191 -12.95125 -12.74963 -12.64906 -12.52377 -12.27760 -11.94482 -11.90462 -11.77361 -11.36511 -11.33477 -11.16298 -11.10549 -11.00351 -10.91674 -10.68370 -10.47126 -10.34302 -10.22923 -9.87757 -9.56399 -9.22330 -8.92001 -8.68770 -8.35056 -7.87307 -6.45505 -4.02415 1.37576 1.40228 2.47369 3.06886 3.16754 3.24411 3.29550 3.55165 3.78618 4.10631 4.23210 4.82580 4.86198 4.88948 4.95203 5.00107 5.11515 5.26604 5.32067 5.39215 5.45999 5.51211 5.54935 5.64335 5.71316 5.79964 5.83528 5.97507 6.01917 6.04542 6.10848 6.19644 6.23899 6.32260 6.37460 6.47219 6.48488 6.49590 6.56349 6.67573 6.69607 6.78007 7.02838 7.23284 8.02601 8.11657 8.25566 8.37867 8.90645 9.27812 9.54544 10.63535 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.003223 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.833430 B = 8685.450804 C = 9588.595863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.140 3.860 3 O -0.523 6.523 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.071 4.071 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.448 3.552 13 O -0.594 6.594 14 N -0.451 5.451 15 C -0.332 4.332 16 H 0.130 0.870 17 C 0.068 3.932 18 N -0.856 5.856 19 Si 0.861 3.139 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.264 1.264 23 C 0.108 3.892 24 C -0.122 4.122 25 C 0.484 3.516 26 O -0.520 6.520 27 O -0.520 6.520 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.372 0.628 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -6.989 10.147 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.096 3.904 3 O -0.327 6.327 4 C -0.158 4.158 5 C -0.117 4.117 6 C -0.071 4.071 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.139 4.139 11 C -0.137 4.137 12 C 0.237 3.763 13 O -0.479 6.479 14 N -0.171 5.171 15 C -0.459 4.459 16 H 0.147 0.853 17 C -0.139 4.139 18 N -0.491 5.491 19 Si 0.689 3.311 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.015 4.015 24 C -0.161 4.161 25 C 0.327 3.673 26 O -0.408 6.408 27 O -0.331 6.331 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.219 0.781 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.135 0.865 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.377 -7.017 10.356 12.734 hybrid contribution 1.834 -0.550 -1.168 2.243 sum -0.542 -7.567 9.189 11.916 Atomic orbital electron populations 1.21750 0.92087 1.01789 1.03719 1.20929 0.95619 0.83145 0.90747 1.86662 1.26512 1.23248 1.96294 1.21980 1.01371 0.99779 0.92625 1.20650 1.01047 0.99373 0.90616 1.20064 0.94467 0.96146 0.96417 1.21120 0.95818 1.00329 0.96342 1.21133 0.99672 0.96768 0.96260 1.21088 0.95336 0.98339 1.00308 1.21118 0.96300 0.99816 0.96639 1.21094 1.00111 0.96424 0.96064 1.21220 0.82192 0.87490 0.85400 1.90565 1.52791 1.18652 1.85865 1.43853 1.59474 1.10153 1.03637 1.19454 1.20463 0.80546 1.25420 0.85334 1.25249 0.97291 0.95360 0.96013 1.69740 1.36735 1.12151 1.30518 0.87219 0.85969 0.77878 0.79999 1.19904 1.21583 1.18886 1.21462 0.94575 0.97246 0.88243 1.21736 1.02426 1.00538 0.91357 1.23710 0.83379 0.75619 0.84639 1.90700 1.20261 1.58306 1.71520 1.84580 1.43323 1.65646 1.39557 0.91522 0.90615 0.91866 0.78079 0.91762 0.90583 0.90751 0.90028 0.86022 0.86362 0.86525 0.86377 0.86110 0.91591 0.90609 0.90226 0.87643 0.86545 0.73841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.28 37.15 0.31 -1.87 16 2 C 0.14 2.47 0.64 -91.77 -0.06 2.41 16 3 O -0.52 -9.59 9.07 -35.23 -0.32 -9.91 16 4 C -0.12 -1.85 3.88 -26.73 -0.10 -1.96 16 5 C -0.08 -1.04 4.86 -27.88 -0.14 -1.17 16 6 C -0.07 -0.90 5.13 -104.63 -0.54 -1.44 16 7 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 8 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 9 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 10 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 11 C -0.12 -1.40 9.70 -39.59 -0.38 -1.79 16 12 C 0.45 9.54 6.58 -10.98 -0.07 9.46 16 13 O -0.59 -13.83 15.65 5.55 0.09 -13.74 16 14 N -0.45 -10.06 2.22 -114.81 -0.25 -10.31 16 15 C -0.33 -7.93 7.67 -14.93 -0.11 -8.04 16 16 H 0.13 3.24 5.35 -52.49 -0.28 2.96 16 17 C 0.07 1.70 5.33 -17.46 -0.09 1.61 16 18 N -0.86 -22.72 13.96 55.50 0.77 -21.94 16 19 Si 0.86 20.25 24.90 -169.99 -4.23 16.01 16 20 H -0.27 -6.51 6.67 56.52 0.38 -6.13 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.11 2.36 3.54 -4.04 -0.01 2.35 16 24 C -0.12 -2.23 6.14 -27.88 -0.17 -2.41 16 25 C 0.48 8.41 8.33 36.01 0.30 8.70 16 26 O -0.52 -10.56 16.74 -18.75 -0.31 -10.88 16 27 O -0.52 -6.97 13.42 -39.25 -0.53 -7.49 16 28 H 0.07 0.94 6.62 -51.93 -0.34 0.59 16 29 H 0.07 1.34 6.84 -51.93 -0.36 0.99 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.37 6.35 9.02 45.56 0.41 6.76 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.24 7.97 -51.93 -0.41 0.82 16 34 H 0.07 0.91 6.53 -51.93 -0.34 0.57 16 35 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.08 1.77 2.88 -51.92 -0.15 1.62 16 43 H 0.08 1.81 7.33 -51.93 -0.38 1.43 16 44 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 45 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 46 H 0.40 3.46 9.10 45.56 0.41 3.88 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.01 377.11 -6.55 -37.56 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -4.79 Total: 16.16 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.65 Total: -1.14 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.52 Total: -32.25 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.07 Total: -42.02 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.23 Total: 16.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.01 -6.55 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593387564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.941 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds