Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47264 * 2 1 4 4 C 1.53002 * 109.47326 * 120.00102 * 2 1 3 5 5 C 1.53006 * 109.47052 * 297.75343 * 4 2 1 6 6 C 1.50693 * 109.46878 * 181.04357 * 5 4 2 7 7 C 1.38234 * 120.00056 * 90.00633 * 6 5 4 8 8 C 1.38241 * 120.00041 * 179.97438 * 7 6 5 9 9 C 1.38243 * 119.99613 * 359.94973 * 8 7 6 10 10 C 1.38233 * 119.99788 * 0.27896 * 9 8 7 11 11 C 1.38230 * 120.00241 * 359.51106 * 10 9 8 12 12 C 1.50709 * 109.47421 * 240.00126 * 2 1 3 13 13 O 1.21285 * 119.99924 * 260.93829 * 12 2 1 14 14 N 1.34775 * 119.99741 * 80.93614 * 12 2 1 15 15 C 1.37095 * 120.00160 * 4.19742 * 14 12 2 16 16 H 1.07992 * 120.00549 * 324.56021 * 15 14 12 17 17 C 1.38957 * 119.99625 * 144.55369 * 15 14 12 18 18 N 1.31414 * 119.99550 * 158.36958 * 17 15 14 19 19 Si 1.86796 * 120.00242 * 338.37540 * 17 15 14 20 20 H 1.48497 * 109.47287 * 95.09005 * 19 17 15 21 21 H 1.48499 * 109.47161 * 215.09639 * 19 17 15 22 22 H 1.48497 * 109.47055 * 335.09134 * 19 17 15 23 23 C 1.46496 * 119.99678 * 184.20313 * 14 12 2 24 24 C 1.52999 * 109.47464 * 89.99799 * 23 14 12 25 25 C 1.50705 * 109.47249 * 179.97438 * 24 23 14 26 26 O 1.20820 * 119.99993 * 0.02562 * 25 24 23 27 27 O 1.34226 * 119.99497 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47353 * 302.19841 * 1 2 3 29 29 H 1.09003 * 109.47182 * 62.20661 * 1 2 3 30 30 H 1.09010 * 109.46783 * 182.20111 * 1 2 3 31 31 H 0.96695 * 114.00584 * 182.78608 * 3 2 1 32 32 H 1.09005 * 109.47125 * 177.75814 * 4 2 1 33 33 H 1.08992 * 109.47151 * 57.75052 * 4 2 1 34 34 H 1.08996 * 109.46787 * 61.03986 * 5 4 2 35 35 H 1.09001 * 109.46825 * 301.04311 * 5 4 2 36 36 H 1.07999 * 119.99984 * 359.96716 * 7 6 5 37 37 H 1.07994 * 120.00352 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.99622 * 180.02562 * 9 8 7 39 39 H 1.08005 * 119.99659 * 179.72794 * 10 9 8 40 40 H 1.08006 * 119.99982 * 180.25310 * 11 10 9 41 41 H 0.96998 * 119.99310 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.47343 * 210.00024 * 23 14 12 43 43 H 1.09002 * 109.47484 * 329.99901 * 23 14 12 44 44 H 1.08993 * 109.47235 * 299.99986 * 24 23 14 45 45 H 1.09006 * 109.47037 * 59.99961 * 24 23 14 46 46 H 0.96707 * 116.99421 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5767 0.0319 2.4979 6 6 2.1006 -0.6641 3.7275 7 6 3.3294 -0.3093 4.2519 8 6 3.8097 -0.9474 5.3802 9 6 3.0606 -1.9397 5.9847 10 6 1.8339 -2.2977 5.4575 11 6 1.3517 -1.6566 4.3318 12 6 2.0324 -0.7104 -1.2305 13 8 2.3905 -1.8670 -1.1593 14 7 2.0837 -0.0605 -2.4101 15 6 1.7609 1.2704 -2.4740 16 1 0.9787 1.6673 -1.8440 17 6 2.4402 2.1088 -3.3496 18 7 1.8925 3.2396 -3.7344 19 14 4.1318 1.6282 -3.9796 20 1 3.9966 0.9526 -5.2950 21 1 4.9676 2.8461 -4.1321 22 1 4.7760 0.7039 -3.0123 23 6 2.4842 -0.7762 -3.6239 24 6 1.2460 -1.3715 -4.2971 25 6 1.6581 -2.1073 -5.5461 26 8 2.8227 -2.1514 -5.8648 27 8 0.7313 -2.7145 -6.3039 28 1 -0.3633 0.5475 0.8695 29 1 -0.3634 0.4792 -0.9091 30 1 -0.3633 -1.0270 0.0395 31 1 2.9693 1.4241 -0.0429 32 1 3.1293 -0.7562 1.2293 33 1 1.6442 -1.7366 1.2696 34 1 0.4873 0.0509 2.5274 35 1 1.9572 1.0529 2.4684 36 1 3.9142 0.4664 3.7800 37 1 4.7699 -0.6706 5.7897 38 1 3.4357 -2.4379 6.8664 39 1 1.2507 -3.0759 5.9272 40 1 0.3915 -1.9335 3.9223 41 1 2.3666 3.8246 -4.3459 42 1 2.9730 -0.0838 -4.3094 43 1 3.1758 -1.5770 -3.3620 44 1 0.7573 -2.0639 -3.6117 45 1 0.5544 -0.5707 -4.5590 46 1 1.0438 -3.1741 -7.0953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593387564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = -165.736539 kcal Electronic energy + Delta-G solvation = -29582.483442 eV Core-core repulsion = 25436.550081 eV Total energy + Delta-G solvation = -4145.933361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62406 -41.09382 -40.07322 -38.10896 -37.31701 -36.97270 -34.70844 -34.10654 -32.59235 -32.00448 -31.70404 -29.16277 -26.95555 -26.74737 -25.63868 -23.39177 -23.06583 -22.19394 -21.43250 -20.68128 -19.49598 -19.10176 -18.25285 -17.96073 -17.57861 -17.17938 -16.81000 -16.47559 -16.45519 -16.21796 -15.95566 -15.48371 -15.05132 -14.94501 -14.54926 -14.39291 -14.25266 -14.16612 -13.94457 -13.70850 -13.63876 -13.54664 -13.25222 -13.05493 -12.96293 -12.73781 -12.63573 -12.56109 -12.28174 -12.13384 -12.03414 -11.82708 -11.75340 -11.68463 -11.56328 -11.10119 -11.05852 -10.18389 -9.76238 -9.72448 -9.48403 -8.41837 -5.97265 0.51178 0.55883 1.08990 1.17525 1.31658 1.37464 1.68474 1.94786 2.18901 2.61787 2.94156 3.02873 3.51265 3.75172 3.78834 3.81767 3.93876 4.01719 4.15911 4.21174 4.28598 4.29927 4.39423 4.48827 4.52799 4.58718 4.61798 4.71540 4.76740 4.80697 4.83727 4.97537 5.03485 5.07900 5.19893 5.23868 5.36913 5.38642 5.44644 5.50320 5.63925 5.67432 5.82889 6.16906 6.19860 6.39237 6.81523 6.91437 7.04403 7.42871 7.72172 8.70463 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.003223 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.833430 B = 8685.450804 C = 9588.595863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.142 3.858 3 O -0.530 6.530 4 C -0.106 4.106 5 C -0.068 4.068 6 C -0.090 4.090 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.127 4.127 11 C -0.131 4.131 12 C 0.448 3.552 13 O -0.612 6.612 14 N -0.461 5.461 15 C -0.308 4.308 16 H 0.119 0.881 17 C 0.040 3.960 18 N -0.890 5.890 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.105 3.895 24 C -0.117 4.117 25 C 0.495 3.505 26 O -0.554 6.554 27 O -0.503 6.503 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.376 0.624 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.275 0.725 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -8.198 11.463 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.098 3.902 3 O -0.335 6.335 4 C -0.145 4.145 5 C -0.105 4.105 6 C -0.090 4.090 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.145 4.145 11 C -0.149 4.149 12 C 0.238 3.762 13 O -0.498 6.498 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.136 0.864 17 C -0.164 4.164 18 N -0.528 5.528 19 Si 0.730 3.270 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.198 1.198 23 C -0.019 4.019 24 C -0.155 4.155 25 C 0.339 3.661 26 O -0.445 6.445 27 O -0.317 6.317 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.223 0.777 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.156 -8.247 11.657 14.623 hybrid contribution 2.053 -0.316 -1.528 2.579 sum -1.103 -8.563 10.129 13.309 Atomic orbital electron populations 1.21753 0.90494 1.02870 1.03807 1.21052 0.96738 0.82655 0.89802 1.86653 1.26959 1.23696 1.96205 1.21842 1.00402 0.99481 0.92757 1.20515 1.01564 0.98756 0.89658 1.20089 0.95133 0.97083 0.96671 1.21307 0.95977 1.00913 0.97138 1.21431 1.00592 0.96742 0.95901 1.21460 0.95123 0.97913 1.00853 1.21457 0.96667 1.00065 0.96267 1.21326 1.00630 0.96346 0.96589 1.21959 0.80943 0.87306 0.86042 1.90550 1.53327 1.19629 1.86288 1.43940 1.60066 1.09770 1.04384 1.19282 1.19169 0.81008 1.24027 0.86419 1.25521 0.98649 0.95485 0.96742 1.69776 1.37686 1.13216 1.32138 0.86600 0.84280 0.77085 0.78989 1.20763 1.21521 1.19844 1.21391 0.95967 0.96460 0.88037 1.21563 1.00684 1.01055 0.92231 1.23340 0.83049 0.75268 0.84483 1.90700 1.21697 1.59742 1.72369 1.84501 1.41820 1.65024 1.40336 0.89286 0.92454 0.90477 0.77676 0.93086 0.91134 0.89710 0.90370 0.85855 0.84517 0.84082 0.84109 0.85063 0.91480 0.92208 0.91575 0.86413 0.86123 0.70934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.28 71.98 0.60 -3.43 16 2 C 0.14 4.90 0.64 -11.54 -0.01 4.89 16 3 O -0.53 -19.25 9.07 -148.98 -1.35 -20.60 16 4 C -0.11 -3.23 3.88 30.60 0.12 -3.11 16 5 C -0.07 -1.69 4.86 29.85 0.15 -1.54 16 6 C -0.09 -2.17 5.13 -19.87 -0.10 -2.27 16 7 C -0.14 -3.16 9.70 22.27 0.22 -2.94 16 8 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 9 C -0.14 -2.50 10.05 22.27 0.22 -2.28 16 10 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 11 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 12 C 0.45 18.91 6.58 87.66 0.58 19.49 16 13 O -0.61 -28.33 15.65 -3.04 -0.05 -28.37 16 14 N -0.46 -20.55 2.22 -635.54 -1.41 -21.96 16 15 C -0.31 -14.70 7.67 84.04 0.65 -14.05 16 16 H 0.12 5.94 5.35 -2.91 -0.02 5.92 16 17 C 0.04 2.00 5.33 84.93 0.45 2.45 16 18 N -0.89 -47.58 13.96 21.67 0.30 -47.28 16 19 Si 0.90 42.40 24.90 68.60 1.71 44.11 16 20 H -0.28 -13.45 6.67 99.48 0.66 -12.79 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 23 C 0.10 4.59 3.54 86.38 0.31 4.90 16 24 C -0.12 -4.19 6.14 29.85 0.18 -4.00 16 25 C 0.49 16.56 8.33 71.24 0.59 17.15 16 26 O -0.55 -22.22 16.74 21.98 0.37 -21.85 16 27 O -0.50 -12.22 13.42 -51.38 -0.69 -12.91 16 28 H 0.09 2.31 6.62 -2.39 -0.02 2.29 16 29 H 0.06 1.97 6.84 -2.39 -0.02 1.95 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.38 12.85 9.02 -74.06 -0.67 12.18 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 34 H 0.08 1.91 6.53 -2.39 -0.02 1.89 16 35 H 0.08 1.99 7.53 -2.39 -0.02 1.97 16 36 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.06 2.82 2.88 -2.38 -0.01 2.81 16 43 H 0.07 3.04 7.33 -2.39 -0.02 3.03 16 44 H 0.12 3.91 8.14 -2.39 -0.02 3.90 16 45 H 0.12 4.23 8.14 -2.38 -0.02 4.22 16 46 H 0.43 6.09 9.10 -74.05 -0.67 5.42 16 Total: -1.00 -66.01 377.11 3.13 -62.88 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.35 Total: 37.95 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 4.61 Total: 8.03 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.11 Total: -69.23 kcal Atomic # 8 Polarization: -82.02 SS G_CDS: -1.72 Total: -83.74 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.71 Total: 44.11 kcal Total: -66.01 3.13 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593387564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.861 kcal (2) G-P(sol) polarization free energy of solvation -66.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds