Wall clock time and date at job start Tue Mar 31 2020 19:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47061 * 56.84190 * 3 2 1 5 5 C 1.52996 * 109.47303 * 176.84445 * 3 2 1 6 6 N 1.46501 * 109.46924 * 296.84785 * 3 2 1 7 7 C 1.46493 * 119.99994 * 119.04421 * 6 3 2 8 8 C 1.50706 * 109.47167 * 86.52497 * 7 6 3 9 9 O 1.20823 * 119.99868 * 5.47451 * 8 7 6 10 10 O 1.34230 * 119.99948 * 185.47454 * 8 7 6 11 11 C 1.34777 * 119.99616 * 299.04625 * 6 3 2 12 12 O 1.21281 * 120.00157 * 359.97438 * 11 6 3 13 13 C 1.50701 * 119.99765 * 180.02562 * 11 6 3 14 14 C 1.50700 * 109.47243 * 179.97438 * 13 11 6 15 15 C 1.38306 * 119.92904 * 269.72480 * 14 13 11 16 16 C 1.38095 * 120.06671 * 179.72433 * 15 14 13 17 17 C 1.38880 * 119.93227 * 0.56630 * 16 15 14 18 18 O 1.35746 * 120.07385 * 179.68016 * 17 16 15 19 19 C 1.34829 * 117.00530 * 185.89306 * 18 17 16 20 20 H 1.07995 * 119.99925 * 4.84401 * 19 18 17 21 21 C 1.38654 * 120.00164 * 184.84103 * 19 18 17 22 22 N 1.31556 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99890 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47285 * 59.99935 * 23 21 19 25 25 H 1.48503 * 109.46740 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46714 * 299.99728 * 23 21 19 27 27 C 1.38885 * 119.86199 * 359.70846 * 17 16 15 28 28 C 1.38101 * 119.92739 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47178 * 65.07819 * 1 2 3 30 30 H 1.09002 * 109.47049 * 185.06909 * 1 2 3 31 31 H 1.08998 * 109.47571 * 305.07668 * 1 2 3 32 32 H 1.08993 * 109.47825 * 239.99810 * 2 1 3 33 33 H 1.08998 * 109.46889 * 119.99592 * 2 1 3 34 34 H 1.09002 * 109.46821 * 59.99584 * 5 3 2 35 35 H 1.08994 * 109.47166 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46885 * 300.00138 * 5 3 2 37 37 H 1.09003 * 109.46952 * 206.52503 * 7 6 3 38 38 H 1.09001 * 109.47208 * 326.52468 * 7 6 3 39 39 H 0.96705 * 116.99365 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.46800 * 299.99520 * 13 11 6 41 41 H 1.08996 * 109.47174 * 59.99382 * 13 11 6 42 42 H 1.07999 * 119.96237 * 359.97438 * 15 14 13 43 43 H 1.07995 * 120.03546 * 180.27542 * 16 15 14 44 44 H 0.96999 * 120.00166 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.03639 * 179.97438 * 27 17 16 46 46 H 1.07996 * 119.96172 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 0.8603 5 6 3.5679 1.4434 0.0794 6 7 1.6146 2.1109 -1.2324 7 6 0.7499 3.2914 -1.1644 8 6 1.5977 4.5262 -0.9974 9 8 2.8023 4.4422 -1.0401 10 8 1.0146 5.7192 -0.8013 11 6 2.0188 1.6394 -2.4285 12 8 2.7350 0.6623 -2.4847 13 6 1.5817 2.3272 -3.6962 14 6 2.1665 1.6087 -4.8849 15 6 3.3992 1.9892 -5.3833 16 6 3.9402 1.3290 -6.4689 17 6 3.2399 0.2897 -7.0674 18 8 3.7662 -0.3569 -8.1387 19 6 2.9841 -1.2717 -8.7465 20 1 1.9615 -1.4060 -8.4263 21 6 3.4928 -2.0400 -9.7826 22 7 4.7386 -1.8768 -10.1723 23 14 2.4089 -3.3069 -10.6251 24 1 1.2311 -2.6303 -11.2250 25 1 3.1836 -3.9898 -11.6922 26 1 1.9504 -4.3074 -9.6281 27 6 1.9997 -0.0863 -6.5681 28 6 1.4670 0.5736 -5.4781 29 1 -0.3634 0.4330 -0.9320 30 1 -0.3633 -1.0237 0.0908 31 1 -0.3634 0.5905 0.8410 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.9766 0.9134 -0.7809 35 1 3.9312 2.4710 0.0789 36 1 3.8843 0.9461 0.9964 37 1 0.1701 3.3705 -2.0840 38 1 0.0732 3.1978 -0.3151 39 1 1.5998 6.4824 -0.6999 40 1 0.4938 2.3120 -3.7612 41 1 1.9309 3.3597 -3.6884 42 1 3.9409 2.8008 -4.9206 43 1 4.9048 1.6237 -6.8549 44 1 5.0943 -2.4140 -10.8973 45 1 1.4526 -0.8938 -7.0316 46 1 0.5028 0.2814 -5.0891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594974699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:15 Heat of formation + Delta-G solvation = -127.581173 kcal Electronic energy + Delta-G solvation = -29231.001094 eV Core-core repulsion = 25086.722274 eV Total energy + Delta-G solvation = -4144.278820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02280 -39.86923 -38.86921 -36.91561 -36.44014 -35.92663 -33.94145 -32.37323 -31.21748 -30.17684 -30.08911 -28.27018 -26.62063 -25.13001 -23.83111 -22.65728 -21.95050 -21.86717 -20.48290 -18.77838 -18.50938 -17.93215 -17.31275 -16.95350 -16.91305 -16.52806 -15.73437 -15.22008 -14.62991 -14.55370 -14.38607 -14.07129 -13.98489 -13.64253 -13.50573 -13.41051 -13.34204 -13.22239 -13.01631 -12.64316 -12.51264 -12.26497 -11.96086 -11.84420 -11.79056 -11.51652 -11.39837 -11.23787 -11.09875 -11.02630 -10.83631 -10.80719 -10.70432 -10.57476 -10.39005 -9.43885 -9.30826 -8.95936 -8.77309 -8.09578 -7.11551 -6.40411 -3.98967 1.82572 2.18934 2.30580 2.37564 2.77098 3.06077 3.15859 3.17560 3.19844 4.00573 4.29667 4.47021 4.63799 4.72007 4.79537 4.89752 4.94750 5.02176 5.13286 5.18127 5.24518 5.29493 5.34601 5.46121 5.52353 5.59995 5.64127 5.76213 5.79992 5.90624 5.94374 5.96053 6.12894 6.17416 6.27488 6.31387 6.47343 6.53577 6.75261 6.96318 7.09532 7.19719 7.29802 7.41417 7.49681 7.53196 7.89160 8.04626 8.24655 9.05096 9.76371 10.77767 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002607 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.679490 B =10738.343716 C =11386.105430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.153 3.847 4 H 0.078 0.922 5 C -0.172 4.172 6 N -0.603 5.603 7 C 0.120 3.880 8 C 0.450 3.550 9 O -0.496 6.496 10 O -0.519 6.519 11 C 0.521 3.479 12 O -0.499 6.499 13 C -0.083 4.083 14 C -0.170 4.170 15 C -0.058 4.058 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.411 0.589 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 11.957 21.608 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.051 3.949 4 H 0.096 0.904 5 C -0.230 4.230 6 N -0.339 5.339 7 C -0.006 4.006 8 C 0.290 3.710 9 O -0.382 6.382 10 O -0.331 6.331 11 C 0.310 3.690 12 O -0.371 6.371 13 C -0.123 4.123 14 C -0.171 4.171 15 C -0.076 4.076 16 C -0.211 4.211 17 C 0.104 3.896 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.251 4.251 28 C -0.074 4.074 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.270 0.730 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.934 10.932 21.201 26.240 hybrid contribution -0.165 0.044 -0.169 0.241 sum -11.099 10.976 21.032 26.192 Atomic orbital electron populations 1.21721 0.95827 1.01574 1.01301 1.21994 0.95996 0.96186 1.04075 1.21087 0.95615 0.93146 0.85089 0.90397 1.22220 0.94674 1.02929 1.03164 1.47912 1.51708 1.27282 1.07033 1.21025 0.91574 0.81000 1.07042 1.24398 0.88565 0.85252 0.72832 1.90780 1.16132 1.86282 1.44972 1.84520 1.45974 1.18481 1.84160 1.20957 0.79627 0.84370 0.84039 1.90687 1.34455 1.25736 1.86223 1.20507 1.01331 0.99547 0.90905 1.18575 0.97566 1.01953 0.99015 1.20401 0.94098 0.98194 0.94921 1.20142 1.01603 0.99102 1.00205 1.19387 0.91615 0.91279 0.87359 1.83988 1.40812 1.47684 1.35660 1.21270 0.94871 1.15464 1.15124 0.89172 1.25282 0.96565 0.97947 0.96733 1.70031 1.13662 1.38993 1.27164 0.85793 0.79043 0.79777 0.78880 1.19517 1.20304 1.19512 1.21094 0.98297 1.04803 1.00937 1.20479 0.98046 0.94157 0.94710 0.92785 0.92757 0.93260 0.89240 0.91256 0.89991 0.92024 0.92328 0.85610 0.86241 0.73004 0.89040 0.89427 0.87486 0.86589 0.92005 0.85610 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 37.16 0.36 -0.83 16 2 C -0.14 -1.44 5.28 -26.73 -0.14 -1.59 16 3 C 0.15 1.50 2.69 -67.93 -0.18 1.32 16 4 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 5 C -0.17 -2.03 9.11 37.16 0.34 -1.69 16 6 N -0.60 -6.06 1.38 -167.47 -0.23 -6.29 16 7 C 0.12 0.76 5.81 -5.19 -0.03 0.73 16 8 C 0.45 3.57 8.39 36.01 0.30 3.87 16 9 O -0.50 -5.97 16.41 -18.75 -0.31 -6.27 16 10 O -0.52 -2.78 13.42 -39.26 -0.53 -3.31 16 11 C 0.52 7.17 7.08 -10.98 -0.08 7.09 16 12 O -0.50 -8.97 12.22 5.56 0.07 -8.90 16 13 C -0.08 -1.06 4.33 -29.03 -0.13 -1.19 16 14 C -0.17 -3.00 4.38 -104.57 -0.46 -3.46 16 15 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 16 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 17 C 0.16 3.97 6.65 -39.10 -0.26 3.71 16 18 O -0.18 -5.25 9.76 0.06 0.00 -5.24 16 19 C -0.39 -11.19 9.45 30.89 0.29 -10.90 16 20 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 23 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.23 -5.23 9.14 -39.39 -0.36 -5.59 16 28 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 29 H 0.05 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 1.21 6.16 -51.93 -0.32 0.89 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.24 6.10 -51.93 -0.32 0.92 16 35 H 0.06 0.79 7.34 -51.93 -0.38 0.40 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.13 0.56 6.31 -51.93 -0.33 0.23 16 38 H 0.12 0.41 8.00 -51.93 -0.42 -0.01 16 39 H 0.41 0.84 9.10 45.56 0.41 1.25 16 40 H 0.09 0.88 7.35 -51.93 -0.38 0.50 16 41 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 46 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -36.66 384.79 -6.70 -43.35 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.63 Total: 5.28 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.60 Total: -15.16 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.53 Total: -31.40 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.77 Total: -23.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.66 -6.70 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594974699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.230 kcal (2) G-P(sol) polarization free energy of solvation -36.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds