Wall clock time and date at job start Tue Mar 31 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47061 * 56.84190 * 3 2 1 5 5 C 1.52996 * 109.47303 * 176.84445 * 3 2 1 6 6 N 1.46501 * 109.46924 * 296.84785 * 3 2 1 7 7 C 1.46493 * 119.99994 * 119.04421 * 6 3 2 8 8 C 1.50706 * 109.47167 * 86.52497 * 7 6 3 9 9 O 1.20823 * 119.99868 * 5.47451 * 8 7 6 10 10 O 1.34230 * 119.99948 * 185.47454 * 8 7 6 11 11 C 1.34777 * 119.99616 * 299.04625 * 6 3 2 12 12 O 1.21281 * 120.00157 * 359.97438 * 11 6 3 13 13 C 1.50701 * 119.99765 * 180.02562 * 11 6 3 14 14 C 1.50700 * 109.47243 * 179.97438 * 13 11 6 15 15 C 1.38306 * 119.92904 * 269.72480 * 14 13 11 16 16 C 1.38095 * 120.06671 * 179.72433 * 15 14 13 17 17 C 1.38880 * 119.93227 * 0.56630 * 16 15 14 18 18 O 1.35746 * 120.07385 * 179.68016 * 17 16 15 19 19 C 1.34829 * 117.00530 * 185.89306 * 18 17 16 20 20 H 1.07995 * 119.99925 * 4.84401 * 19 18 17 21 21 C 1.38654 * 120.00164 * 184.84103 * 19 18 17 22 22 N 1.31556 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99890 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47285 * 59.99935 * 23 21 19 25 25 H 1.48503 * 109.46740 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46714 * 299.99728 * 23 21 19 27 27 C 1.38885 * 119.86199 * 359.70846 * 17 16 15 28 28 C 1.38101 * 119.92739 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47178 * 65.07819 * 1 2 3 30 30 H 1.09002 * 109.47049 * 185.06909 * 1 2 3 31 31 H 1.08998 * 109.47571 * 305.07668 * 1 2 3 32 32 H 1.08993 * 109.47825 * 239.99810 * 2 1 3 33 33 H 1.08998 * 109.46889 * 119.99592 * 2 1 3 34 34 H 1.09002 * 109.46821 * 59.99584 * 5 3 2 35 35 H 1.08994 * 109.47166 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46885 * 300.00138 * 5 3 2 37 37 H 1.09003 * 109.46952 * 206.52503 * 7 6 3 38 38 H 1.09001 * 109.47208 * 326.52468 * 7 6 3 39 39 H 0.96705 * 116.99365 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.46800 * 299.99520 * 13 11 6 41 41 H 1.08996 * 109.47174 * 59.99382 * 13 11 6 42 42 H 1.07999 * 119.96237 * 359.97438 * 15 14 13 43 43 H 1.07995 * 120.03546 * 180.27542 * 16 15 14 44 44 H 0.96999 * 120.00166 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.03639 * 179.97438 * 27 17 16 46 46 H 1.07996 * 119.96172 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 0.8603 5 6 3.5679 1.4434 0.0794 6 7 1.6146 2.1109 -1.2324 7 6 0.7499 3.2914 -1.1644 8 6 1.5977 4.5262 -0.9974 9 8 2.8023 4.4422 -1.0401 10 8 1.0146 5.7192 -0.8013 11 6 2.0188 1.6394 -2.4285 12 8 2.7350 0.6623 -2.4847 13 6 1.5817 2.3272 -3.6962 14 6 2.1665 1.6087 -4.8849 15 6 3.3992 1.9892 -5.3833 16 6 3.9402 1.3290 -6.4689 17 6 3.2399 0.2897 -7.0674 18 8 3.7662 -0.3569 -8.1387 19 6 2.9841 -1.2717 -8.7465 20 1 1.9615 -1.4060 -8.4263 21 6 3.4928 -2.0400 -9.7826 22 7 4.7386 -1.8768 -10.1723 23 14 2.4089 -3.3069 -10.6251 24 1 1.2311 -2.6303 -11.2250 25 1 3.1836 -3.9898 -11.6922 26 1 1.9504 -4.3074 -9.6281 27 6 1.9997 -0.0863 -6.5681 28 6 1.4670 0.5736 -5.4781 29 1 -0.3634 0.4330 -0.9320 30 1 -0.3633 -1.0237 0.0908 31 1 -0.3634 0.5905 0.8410 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.9766 0.9134 -0.7809 35 1 3.9312 2.4710 0.0789 36 1 3.8843 0.9461 0.9964 37 1 0.1701 3.3705 -2.0840 38 1 0.0732 3.1978 -0.3151 39 1 1.5998 6.4824 -0.6999 40 1 0.4938 2.3120 -3.7612 41 1 1.9309 3.3597 -3.6884 42 1 3.9409 2.8008 -4.9206 43 1 4.9048 1.6237 -6.8549 44 1 5.0943 -2.4140 -10.8973 45 1 1.4526 -0.8938 -7.0316 46 1 0.5028 0.2814 -5.0891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594974699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:14 Heat of formation + Delta-G solvation = -152.225267 kcal Electronic energy + Delta-G solvation = -29232.069742 eV Core-core repulsion = 25086.722274 eV Total energy + Delta-G solvation = -4145.347468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81334 -40.86052 -40.42861 -38.42935 -37.28906 -36.83089 -34.80075 -34.31528 -32.60182 -31.78340 -30.97598 -29.06336 -28.10885 -27.00288 -24.67049 -23.64459 -23.49132 -22.65842 -21.92764 -19.87555 -19.70018 -19.07833 -18.81876 -18.03801 -17.61885 -17.34847 -16.55077 -16.48679 -16.32950 -15.89195 -15.80747 -15.52588 -15.13786 -15.09775 -14.78399 -14.45051 -14.34046 -14.25862 -14.02161 -13.84353 -13.64082 -13.50533 -13.09123 -12.94579 -12.86324 -12.68301 -12.46790 -12.42216 -12.33501 -12.24047 -12.14210 -12.12843 -11.84656 -11.77848 -11.54753 -11.20845 -10.80341 -10.47663 -9.80069 -9.77000 -8.90727 -8.47106 -6.15551 0.60246 0.66103 1.28061 1.34122 1.45364 1.51243 1.52879 1.89423 2.18124 2.42187 2.82244 3.15167 3.49917 3.60542 3.84793 3.98686 4.03385 4.07518 4.15315 4.20387 4.24705 4.37480 4.42674 4.50221 4.53264 4.58902 4.61265 4.68345 4.77962 4.79020 4.81784 5.04508 5.07574 5.12996 5.16563 5.27112 5.29467 5.36499 5.46414 5.55545 5.70681 5.71176 5.72700 5.76432 6.02300 6.19653 6.36515 6.97117 7.06481 7.28084 7.78699 8.76456 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002607 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.679490 B =10738.343716 C =11386.105430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.153 3.847 4 H 0.114 0.886 5 C -0.167 4.167 6 N -0.594 5.594 7 C 0.111 3.889 8 C 0.458 3.542 9 O -0.546 6.546 10 O -0.510 6.510 11 C 0.519 3.481 12 O -0.553 6.553 13 C -0.083 4.083 14 C -0.143 4.143 15 C -0.060 4.060 16 C -0.207 4.207 17 C 0.114 3.886 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.102 0.898 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.254 1.254 25 H -0.272 1.272 26 H -0.258 1.258 27 C -0.241 4.241 28 C -0.054 4.054 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.426 0.574 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.273 0.727 45 H 0.120 0.880 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 13.651 24.652 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.051 3.949 4 H 0.132 0.868 5 C -0.225 4.225 6 N -0.328 5.328 7 C -0.014 4.014 8 C 0.299 3.701 9 O -0.435 6.435 10 O -0.323 6.323 11 C 0.308 3.692 12 O -0.430 6.430 13 C -0.122 4.122 14 C -0.144 4.144 15 C -0.078 4.078 16 C -0.227 4.227 17 C 0.064 3.936 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.119 0.881 21 C -0.222 4.222 22 N -0.562 5.562 23 Si 0.839 3.161 24 H -0.178 1.178 25 H -0.196 1.196 26 H -0.182 1.182 27 C -0.260 4.260 28 C -0.072 4.072 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.287 0.713 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.308 12.721 24.322 31.428 hybrid contribution 1.112 -0.176 -0.745 1.350 sum -14.195 12.546 23.577 30.245 Atomic orbital electron populations 1.21689 0.93853 1.01940 1.02408 1.21923 0.97645 0.95966 1.02472 1.21178 0.94027 0.93599 0.86076 0.86774 1.22144 0.96668 1.01576 1.02145 1.47806 1.51132 1.28023 1.05854 1.21524 0.90949 0.78559 1.10335 1.24624 0.87847 0.86163 0.71432 1.90794 1.18272 1.86993 1.47490 1.84483 1.46005 1.18438 1.83346 1.21021 0.79077 0.83737 0.85337 1.90707 1.36968 1.28221 1.87132 1.20635 1.04004 0.99557 0.88039 1.19163 0.96028 1.00126 0.99063 1.20777 0.95004 0.98375 0.93687 1.20372 1.01645 0.99238 1.01417 1.19902 0.93411 0.92471 0.87835 1.83946 1.42445 1.49606 1.38123 1.21806 0.95666 1.15744 1.15844 0.88059 1.26649 0.98226 1.00130 0.97193 1.70191 1.16183 1.41145 1.28647 0.84630 0.77147 0.76588 0.77713 1.17799 1.19604 1.18227 1.21244 0.97443 1.05185 1.02144 1.20919 0.99606 0.93547 0.93120 0.92816 0.93218 0.90540 0.93300 0.90546 0.93868 0.93208 0.90868 0.82847 0.82165 0.71258 0.84329 0.87289 0.84917 0.87391 0.91839 0.86206 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.72 71.98 0.70 -1.06 16 2 C -0.14 -2.54 5.28 30.60 0.16 -2.38 16 3 C 0.15 2.55 2.69 44.99 0.12 2.67 16 4 H 0.11 1.13 7.85 -2.39 -0.02 1.11 16 5 C -0.17 -3.84 9.11 71.98 0.66 -3.18 16 6 N -0.59 -9.69 1.38 -802.13 -1.11 -10.80 16 7 C 0.11 0.76 5.81 85.64 0.50 1.26 16 8 C 0.46 5.28 8.39 71.24 0.60 5.87 16 9 O -0.55 -11.73 16.41 21.97 0.36 -11.37 16 10 O -0.51 -3.14 13.42 -51.41 -0.69 -3.83 16 11 C 0.52 12.83 7.08 87.66 0.62 13.45 16 12 O -0.55 -19.69 12.22 -3.03 -0.04 -19.72 16 13 C -0.08 -1.75 4.33 29.10 0.13 -1.63 16 14 C -0.14 -4.70 4.38 -19.83 -0.09 -4.79 16 15 C -0.06 -2.29 9.69 22.25 0.22 -2.07 16 16 C -0.21 -9.76 9.99 22.39 0.22 -9.54 16 17 C 0.11 6.08 6.65 22.58 0.15 6.23 16 18 O -0.23 -14.89 9.76 -22.69 -0.22 -15.11 16 19 C -0.41 -25.12 9.45 67.92 0.64 -24.48 16 20 H 0.10 5.60 5.29 -2.91 -0.02 5.59 16 21 C -0.02 -1.46 5.49 84.83 0.47 -1.00 16 22 N -0.92 -58.70 13.67 21.61 0.30 -58.41 16 23 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 24 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 C -0.24 -11.09 9.14 22.39 0.20 -10.89 16 28 C -0.05 -1.94 9.69 22.25 0.22 -1.72 16 29 H 0.05 0.67 7.85 -2.39 -0.02 0.65 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 1.31 6.16 -2.39 -0.01 1.29 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.34 6.10 -2.39 -0.01 1.33 16 35 H 0.05 1.24 7.34 -2.39 -0.02 1.22 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.15 0.27 6.31 -2.39 -0.02 0.25 16 38 H 0.16 -0.09 8.00 -2.39 -0.02 -0.11 16 39 H 0.43 0.16 9.10 -74.05 -0.67 -0.51 16 40 H 0.14 1.70 7.35 -2.39 -0.02 1.68 16 41 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 42 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.12 5.55 5.71 -2.91 -0.02 5.53 16 46 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -90.56 384.79 6.48 -84.08 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.34 Total: 22.31 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 5.51 Total: -33.24 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -0.81 Total: -69.21 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.59 Total: -50.04 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -90.56 6.48 -84.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594974699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.142 kcal (2) G-P(sol) polarization free energy of solvation -90.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds