Wall clock time and date at job start Tue Mar 31 2020 19:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 H 1.09003 * 109.47016 * 303.04908 * 3 2 1 5 5 C 1.53003 * 109.47000 * 183.05511 * 3 2 1 6 6 N 1.46489 * 109.47288 * 63.05179 * 3 2 1 7 7 C 1.46501 * 120.00267 * 241.47089 * 6 3 2 8 8 C 1.50697 * 109.47417 * 272.87207 * 7 6 3 9 9 O 1.20820 * 119.99946 * 4.56871 * 8 7 6 10 10 O 1.34229 * 120.00126 * 184.56603 * 8 7 6 11 11 C 1.34779 * 120.00017 * 61.47457 * 6 3 2 12 12 O 1.21287 * 119.99890 * 0.02562 * 11 6 3 13 13 C 1.50698 * 120.00198 * 179.97438 * 11 6 3 14 14 C 1.50699 * 109.47214 * 180.02562 * 13 11 6 15 15 C 1.38295 * 119.93509 * 90.00035 * 14 13 11 16 16 C 1.38104 * 120.07317 * 180.02562 * 15 14 13 17 17 C 1.38876 * 119.92814 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06900 * 180.02562 * 17 16 15 19 19 C 1.34835 * 117.00094 * 5.50319 * 18 17 16 20 20 H 1.07997 * 119.99378 * 354.90692 * 19 18 17 21 21 C 1.38654 * 120.00337 * 174.90349 * 19 18 17 22 22 N 1.31564 * 119.99511 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46926 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00120 * 23 21 19 26 26 H 1.48499 * 109.47075 * 240.00148 * 23 21 19 27 27 C 1.38880 * 119.86246 * 0.27459 * 17 16 15 28 28 C 1.38096 * 119.93031 * 359.49041 * 27 17 16 29 29 H 1.08996 * 109.47089 * 304.79962 * 1 2 3 30 30 H 1.09000 * 109.47358 * 64.80336 * 1 2 3 31 31 H 1.09002 * 109.46910 * 184.79774 * 1 2 3 32 32 H 1.08998 * 109.47404 * 239.99431 * 2 1 3 33 33 H 1.09003 * 109.46916 * 119.99651 * 2 1 3 34 34 H 1.09004 * 109.47315 * 59.99935 * 5 3 2 35 35 H 1.09001 * 109.46815 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47441 * 299.99750 * 5 3 2 37 37 H 1.09002 * 109.46860 * 32.87646 * 7 6 3 38 38 H 1.09004 * 109.47270 * 152.86950 * 7 6 3 39 39 H 0.96691 * 117.00241 * 180.02562 * 10 8 7 40 40 H 1.09001 * 109.47046 * 59.99986 * 13 11 6 41 41 H 1.09004 * 109.47354 * 299.99904 * 13 11 6 42 42 H 1.08005 * 119.96703 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.03276 * 179.97438 * 16 15 14 44 44 H 0.96998 * 119.99281 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.03396 * 179.72459 * 27 17 16 46 46 H 1.07997 * 119.96965 * 180.23208 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9719 -0.8614 5 6 3.5681 1.4431 -0.0769 6 7 1.6127 2.1115 1.2311 7 6 0.7389 3.2854 1.1616 8 6 1.5777 4.5273 1.0034 9 8 2.7750 4.4348 0.8709 10 8 0.9946 5.7363 1.0096 11 6 2.0234 1.6472 2.4279 12 8 2.7472 0.6757 2.4855 13 6 1.5843 2.3358 3.6944 14 6 2.1774 1.6256 4.8839 15 6 3.4110 2.0132 5.3745 16 6 3.9574 1.3641 6.4641 17 6 3.2666 0.3213 7.0675 18 8 3.8009 -0.3184 8.1390 19 6 4.9500 0.1794 8.6388 20 1 5.4466 0.9976 8.1386 21 6 5.4940 -0.3592 9.7949 22 7 4.8891 -1.3563 10.4039 23 14 7.0855 0.3310 10.4877 24 1 7.5614 1.4408 9.6235 25 1 6.8470 0.8414 11.8617 26 1 8.1131 -0.7403 10.5291 27 6 2.0305 -0.0690 6.5693 28 6 1.4872 0.5873 5.4825 29 1 -0.3633 0.5865 0.8438 30 1 -0.3634 0.4375 -0.9299 31 1 -0.3633 -1.0241 0.0860 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8860 0.9453 -0.9930 35 1 3.9313 2.4708 -0.0773 36 1 3.9755 0.9138 0.7844 37 1 0.0680 3.1888 0.3080 38 1 0.1529 3.3570 2.0779 39 1 1.5736 6.5036 0.9045 40 1 0.4966 2.3127 3.7622 41 1 1.9257 3.3709 3.6824 42 1 3.9476 2.8246 4.9051 43 1 4.9210 1.6671 6.8465 44 1 5.2699 -1.7332 11.2124 45 1 1.4929 -0.8826 7.0336 46 1 0.5242 0.2867 5.0968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594974700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:18 Heat of formation + Delta-G solvation = -127.065220 kcal Electronic energy + Delta-G solvation = -29237.076701 eV Core-core repulsion = 25092.820255 eV Total energy + Delta-G solvation = -4144.256447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02729 -39.87401 -38.87740 -36.92975 -36.43475 -35.92808 -33.94233 -32.37539 -31.22212 -30.19140 -30.08600 -28.26495 -26.62896 -25.13617 -23.83219 -22.68597 -21.92714 -21.87024 -20.48594 -18.78962 -18.51511 -17.94050 -17.32849 -16.93206 -16.82916 -16.62415 -15.74566 -15.21405 -14.69867 -14.53941 -14.33374 -14.12857 -13.94993 -13.60884 -13.52452 -13.49122 -13.31669 -13.14496 -13.05351 -12.66341 -12.52238 -12.24747 -11.93799 -11.85032 -11.81912 -11.52361 -11.41100 -11.25515 -11.09318 -11.02552 -10.82406 -10.81298 -10.68811 -10.56707 -10.38667 -9.44539 -9.27988 -8.96500 -8.78595 -8.10445 -7.12192 -6.41184 -3.99504 1.82429 2.18539 2.29916 2.36787 2.75839 3.05550 3.15695 3.16697 3.22403 4.00417 4.30445 4.45300 4.64103 4.71606 4.80045 4.89900 4.94372 5.02149 5.13363 5.16881 5.24151 5.26855 5.34945 5.47204 5.53510 5.61031 5.62549 5.77444 5.79885 5.88162 5.94718 5.96980 6.13595 6.17319 6.26347 6.33164 6.46242 6.54593 6.74197 6.95335 7.09182 7.19113 7.28616 7.41851 7.49508 7.53690 7.88179 8.04585 8.23283 9.04841 9.75663 10.77092 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002631 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.495936 B =10639.985337 C =11199.261262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.154 3.846 4 H 0.078 0.922 5 C -0.173 4.173 6 N -0.603 5.603 7 C 0.120 3.880 8 C 0.451 3.549 9 O -0.496 6.496 10 O -0.519 6.519 11 C 0.519 3.481 12 O -0.498 6.498 13 C -0.083 4.083 14 C -0.170 4.170 15 C -0.055 4.055 16 C -0.232 4.232 17 C 0.158 3.842 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.191 4.191 28 C -0.058 4.058 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.411 0.589 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 11.603 -21.781 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.052 3.948 4 H 0.096 0.904 5 C -0.231 4.231 6 N -0.339 5.339 7 C -0.007 4.007 8 C 0.290 3.710 9 O -0.382 6.382 10 O -0.331 6.331 11 C 0.308 3.692 12 O -0.371 6.371 13 C -0.123 4.123 14 C -0.171 4.171 15 C -0.073 4.073 16 C -0.251 4.251 17 C 0.104 3.896 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.211 4.211 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.270 0.730 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.135 0.865 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.959 10.324 -21.383 26.152 hybrid contribution 1.263 1.114 0.109 1.687 sum -9.696 11.438 -21.274 26.027 Atomic orbital electron populations 1.21733 0.95856 1.01783 1.01168 1.21992 0.95978 0.96238 1.04017 1.21055 0.95646 0.93026 0.85083 0.90408 1.22230 0.94644 1.03093 1.03093 1.47918 1.51135 1.27773 1.07066 1.21030 0.91531 0.80997 1.07107 1.24395 0.88315 0.85448 0.72869 1.90770 1.16441 1.87098 1.43936 1.84517 1.46452 1.17071 1.85051 1.20980 0.79765 0.84386 0.84045 1.90689 1.34160 1.26000 1.86203 1.20510 1.01385 0.99485 0.90912 1.18575 0.97584 1.01937 0.99038 1.20504 0.93903 0.97970 0.94949 1.21100 1.02509 1.01139 1.00357 1.19384 0.91747 0.90325 0.88149 1.83976 1.37621 1.48445 1.38145 1.21382 0.98337 1.18287 1.08637 0.89041 1.25285 0.99541 0.96239 0.95488 1.70056 1.38742 1.22820 1.18238 0.85651 0.80056 0.78783 0.78970 1.19107 1.20165 1.20152 1.20143 0.95635 1.04508 1.00783 1.20370 0.98244 0.94414 0.94633 0.92723 0.93264 0.92730 0.91250 0.89348 0.92397 0.91797 0.90034 0.86060 0.85747 0.72987 0.88913 0.89556 0.87972 0.85621 0.92124 0.86548 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.84 37.16 0.37 -0.81 16 2 C -0.14 -1.43 5.29 -26.73 -0.14 -1.57 16 3 C 0.15 1.52 2.68 -67.94 -0.18 1.34 16 4 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 5 C -0.17 -2.07 9.10 37.16 0.34 -1.73 16 6 N -0.60 -6.04 1.20 -167.47 -0.20 -6.24 16 7 C 0.12 0.75 5.80 -5.19 -0.03 0.72 16 8 C 0.45 3.60 8.39 36.00 0.30 3.91 16 9 O -0.50 -5.99 16.14 -18.75 -0.30 -6.29 16 10 O -0.52 -2.85 13.42 -39.26 -0.53 -3.38 16 11 C 0.52 7.09 7.08 -10.99 -0.08 7.01 16 12 O -0.50 -8.90 12.23 5.55 0.07 -8.83 16 13 C -0.08 -1.05 4.34 -29.04 -0.13 -1.18 16 14 C -0.17 -2.99 4.38 -104.58 -0.46 -3.44 16 15 C -0.05 -1.08 9.69 -39.61 -0.38 -1.46 16 16 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 17 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 18 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 19 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 20 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 23 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.19 -4.20 9.99 -39.40 -0.39 -4.59 16 28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 29 H 0.05 0.43 7.56 -51.93 -0.39 0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.18 6.20 -51.93 -0.32 0.85 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.83 7.07 -51.93 -0.37 0.47 16 36 H 0.08 1.24 6.06 -51.93 -0.31 0.92 16 37 H 0.12 0.41 7.99 -51.93 -0.42 -0.01 16 38 H 0.12 0.55 6.34 -51.93 -0.33 0.22 16 39 H 0.41 0.91 9.10 45.56 0.41 1.32 16 40 H 0.09 0.87 7.35 -51.93 -0.38 0.49 16 41 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 42 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -36.64 383.83 -6.63 -43.27 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.60 Total: 5.12 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.59 Total: -15.16 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.56 Total: -31.28 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.76 Total: -23.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.64 -6.63 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594974700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.790 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds