Wall clock time and date at job start Tue Mar 31 2020 19:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 H 1.09003 * 109.47016 * 303.04908 * 3 2 1 5 5 C 1.53003 * 109.47000 * 183.05511 * 3 2 1 6 6 N 1.46489 * 109.47288 * 63.05179 * 3 2 1 7 7 C 1.46501 * 120.00267 * 241.47089 * 6 3 2 8 8 C 1.50697 * 109.47417 * 272.87207 * 7 6 3 9 9 O 1.20820 * 119.99946 * 4.56871 * 8 7 6 10 10 O 1.34229 * 120.00126 * 184.56603 * 8 7 6 11 11 C 1.34779 * 120.00017 * 61.47457 * 6 3 2 12 12 O 1.21287 * 119.99890 * 0.02562 * 11 6 3 13 13 C 1.50698 * 120.00198 * 179.97438 * 11 6 3 14 14 C 1.50699 * 109.47214 * 180.02562 * 13 11 6 15 15 C 1.38295 * 119.93509 * 90.00035 * 14 13 11 16 16 C 1.38104 * 120.07317 * 180.02562 * 15 14 13 17 17 C 1.38876 * 119.92814 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06900 * 180.02562 * 17 16 15 19 19 C 1.34835 * 117.00094 * 5.50319 * 18 17 16 20 20 H 1.07997 * 119.99378 * 354.90692 * 19 18 17 21 21 C 1.38654 * 120.00337 * 174.90349 * 19 18 17 22 22 N 1.31564 * 119.99511 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46926 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00120 * 23 21 19 26 26 H 1.48499 * 109.47075 * 240.00148 * 23 21 19 27 27 C 1.38880 * 119.86246 * 0.27459 * 17 16 15 28 28 C 1.38096 * 119.93031 * 359.49041 * 27 17 16 29 29 H 1.08996 * 109.47089 * 304.79962 * 1 2 3 30 30 H 1.09000 * 109.47358 * 64.80336 * 1 2 3 31 31 H 1.09002 * 109.46910 * 184.79774 * 1 2 3 32 32 H 1.08998 * 109.47404 * 239.99431 * 2 1 3 33 33 H 1.09003 * 109.46916 * 119.99651 * 2 1 3 34 34 H 1.09004 * 109.47315 * 59.99935 * 5 3 2 35 35 H 1.09001 * 109.46815 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47441 * 299.99750 * 5 3 2 37 37 H 1.09002 * 109.46860 * 32.87646 * 7 6 3 38 38 H 1.09004 * 109.47270 * 152.86950 * 7 6 3 39 39 H 0.96691 * 117.00241 * 180.02562 * 10 8 7 40 40 H 1.09001 * 109.47046 * 59.99986 * 13 11 6 41 41 H 1.09004 * 109.47354 * 299.99904 * 13 11 6 42 42 H 1.08005 * 119.96703 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.03276 * 179.97438 * 16 15 14 44 44 H 0.96998 * 119.99281 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.03396 * 179.72459 * 27 17 16 46 46 H 1.07997 * 119.96965 * 180.23208 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9719 -0.8614 5 6 3.5681 1.4431 -0.0769 6 7 1.6127 2.1115 1.2311 7 6 0.7389 3.2854 1.1616 8 6 1.5777 4.5273 1.0034 9 8 2.7750 4.4348 0.8709 10 8 0.9946 5.7363 1.0096 11 6 2.0234 1.6472 2.4279 12 8 2.7472 0.6757 2.4855 13 6 1.5843 2.3358 3.6944 14 6 2.1774 1.6256 4.8839 15 6 3.4110 2.0132 5.3745 16 6 3.9574 1.3641 6.4641 17 6 3.2666 0.3213 7.0675 18 8 3.8009 -0.3184 8.1390 19 6 4.9500 0.1794 8.6388 20 1 5.4466 0.9976 8.1386 21 6 5.4940 -0.3592 9.7949 22 7 4.8891 -1.3563 10.4039 23 14 7.0855 0.3310 10.4877 24 1 7.5614 1.4408 9.6235 25 1 6.8470 0.8414 11.8617 26 1 8.1131 -0.7403 10.5291 27 6 2.0305 -0.0690 6.5693 28 6 1.4872 0.5873 5.4825 29 1 -0.3633 0.5865 0.8438 30 1 -0.3634 0.4375 -0.9299 31 1 -0.3633 -1.0241 0.0860 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8860 0.9453 -0.9930 35 1 3.9313 2.4708 -0.0773 36 1 3.9755 0.9138 0.7844 37 1 0.0680 3.1888 0.3080 38 1 0.1529 3.3570 2.0779 39 1 1.5736 6.5036 0.9045 40 1 0.4966 2.3127 3.7622 41 1 1.9257 3.3709 3.6824 42 1 3.9476 2.8246 4.9051 43 1 4.9210 1.6671 6.8465 44 1 5.2699 -1.7332 11.2124 45 1 1.4929 -0.8826 7.0336 46 1 0.5242 0.2867 5.0968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594974700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:18 Heat of formation + Delta-G solvation = -151.589709 kcal Electronic energy + Delta-G solvation = -29238.140163 eV Core-core repulsion = 25092.820255 eV Total energy + Delta-G solvation = -4145.319908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81823 -40.86504 -40.43252 -38.43213 -37.30080 -36.82173 -34.80191 -34.32350 -32.59751 -31.79228 -30.97318 -29.05847 -28.11305 -27.01728 -24.66991 -23.65286 -23.50990 -22.63773 -21.92287 -19.88332 -19.70106 -19.08414 -18.85233 -18.00931 -17.53612 -17.44174 -16.53564 -16.51601 -16.33649 -15.91951 -15.78660 -15.55002 -15.22419 -14.92866 -14.88137 -14.45343 -14.34151 -14.19336 -14.07128 -13.86381 -13.62159 -13.50763 -13.09007 -12.98667 -12.86209 -12.69499 -12.48908 -12.43029 -12.29285 -12.27760 -12.14423 -12.11150 -11.83330 -11.76515 -11.53161 -11.19618 -10.83071 -10.47802 -9.80498 -9.77098 -8.90897 -8.48844 -6.16878 0.60370 0.65606 1.27429 1.32590 1.40799 1.51194 1.52629 1.88747 2.16290 2.41883 2.81206 3.13938 3.50881 3.60674 3.85034 3.98645 4.02764 4.05862 4.16389 4.18460 4.26101 4.37806 4.41654 4.48838 4.53793 4.58993 4.62731 4.68847 4.77883 4.79872 4.83332 5.05213 5.07921 5.13291 5.17227 5.27137 5.28796 5.37077 5.47320 5.55815 5.70516 5.70842 5.73311 5.76292 6.01908 6.19538 6.36188 6.95889 7.06289 7.27266 7.76993 8.74810 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002631 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.495936 B =10639.985337 C =11199.261262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.155 3.845 4 H 0.112 0.888 5 C -0.168 4.168 6 N -0.594 5.594 7 C 0.110 3.890 8 C 0.457 3.543 9 O -0.546 6.546 10 O -0.510 6.510 11 C 0.517 3.483 12 O -0.553 6.553 13 C -0.083 4.083 14 C -0.143 4.143 15 C -0.063 4.063 16 C -0.244 4.244 17 C 0.114 3.886 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.098 0.902 21 C -0.022 4.022 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.255 1.255 25 H -0.264 1.264 26 H -0.268 1.268 27 C -0.203 4.203 28 C -0.051 4.051 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.426 0.574 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 14.450 -24.819 31.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.053 3.947 4 H 0.130 0.870 5 C -0.226 4.226 6 N -0.328 5.328 7 C -0.014 4.014 8 C 0.299 3.701 9 O -0.436 6.436 10 O -0.323 6.323 11 C 0.307 3.693 12 O -0.429 6.429 13 C -0.122 4.122 14 C -0.144 4.144 15 C -0.081 4.081 16 C -0.264 4.264 17 C 0.064 3.936 18 O -0.139 6.139 19 C -0.491 4.491 20 H 0.115 0.885 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.189 1.189 26 H -0.193 1.193 27 C -0.223 4.223 28 C -0.069 4.069 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.287 0.713 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.575 13.253 -24.493 30.981 hybrid contribution 1.825 0.401 0.693 1.993 sum -11.749 13.654 -23.800 29.848 Atomic orbital electron populations 1.21703 0.93827 1.01831 1.02663 1.21919 0.97670 0.95910 1.02438 1.21132 0.93983 0.93549 0.86069 0.86968 1.22153 0.96723 1.01655 1.02078 1.47815 1.50599 1.28490 1.05877 1.21537 0.90868 0.78519 1.10457 1.24650 0.87614 0.86414 0.71453 1.90785 1.18572 1.87769 1.46452 1.84481 1.46476 1.17041 1.84275 1.21050 0.79212 0.83758 0.85320 1.90709 1.36646 1.28482 1.87101 1.20643 1.04114 0.99495 0.87989 1.19167 0.95942 1.00163 0.99090 1.20841 0.95028 0.98316 0.93933 1.21172 1.02267 1.01315 1.01608 1.19929 0.93472 0.91901 0.88311 1.83934 1.38681 1.50749 1.40568 1.21836 0.98893 1.18889 1.09446 0.88512 1.26586 1.03530 0.96443 0.95420 1.70192 1.41285 1.25033 1.19330 0.84532 0.74857 0.78382 0.78424 1.17807 1.18901 1.19270 1.20463 0.94832 1.05001 1.01966 1.20866 0.99755 0.93484 0.92827 0.92250 0.90768 0.93374 0.90606 0.93296 0.90993 0.93117 0.93827 0.82007 0.82866 0.71277 0.84032 0.87473 0.85726 0.86901 0.91780 0.86688 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.84 71.98 0.71 -1.01 16 2 C -0.14 -2.50 5.29 30.59 0.16 -2.34 16 3 C 0.15 2.60 2.68 44.99 0.12 2.72 16 4 H 0.11 1.17 7.84 -2.39 -0.02 1.15 16 5 C -0.17 -3.92 9.10 71.98 0.65 -3.27 16 6 N -0.59 -9.63 1.20 -802.15 -0.97 -10.59 16 7 C 0.11 0.75 5.80 85.63 0.50 1.25 16 8 C 0.46 5.34 8.39 71.23 0.60 5.94 16 9 O -0.55 -11.79 16.14 21.98 0.35 -11.43 16 10 O -0.51 -3.29 13.42 -51.41 -0.69 -3.98 16 11 C 0.52 12.62 7.08 87.66 0.62 13.24 16 12 O -0.55 -19.46 12.23 -3.05 -0.04 -19.50 16 13 C -0.08 -1.72 4.34 29.10 0.13 -1.59 16 14 C -0.14 -4.65 4.38 -19.83 -0.09 -4.73 16 15 C -0.06 -2.43 9.69 22.25 0.22 -2.22 16 16 C -0.24 -11.67 9.17 22.39 0.21 -11.47 16 17 C 0.11 6.06 6.65 22.58 0.15 6.21 16 18 O -0.23 -14.73 9.76 -22.75 -0.22 -14.95 16 19 C -0.41 -25.39 9.49 67.92 0.64 -24.75 16 20 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 21 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 22 N -0.92 -58.17 13.67 21.61 0.30 -57.87 16 23 Si 1.02 44.72 29.55 68.60 2.03 46.74 16 24 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 C -0.20 -9.13 9.99 22.39 0.22 -8.91 16 28 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 29 H 0.06 0.66 7.56 -2.39 -0.02 0.64 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.29 6.20 -2.39 -0.01 1.27 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 35 H 0.05 1.30 7.07 -2.39 -0.02 1.28 16 36 H 0.04 1.36 6.06 -2.39 -0.01 1.35 16 37 H 0.16 -0.10 7.99 -2.39 -0.02 -0.12 16 38 H 0.15 0.22 6.34 -2.39 -0.02 0.21 16 39 H 0.43 0.32 9.10 -74.06 -0.67 -0.36 16 40 H 0.14 1.63 7.35 -2.39 -0.02 1.61 16 41 H 0.11 1.89 8.05 -2.38 -0.02 1.87 16 42 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 46 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -90.41 383.83 6.63 -83.78 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.34 Total: 21.16 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 5.52 Total: -33.36 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -0.67 Total: -68.47 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.59 Total: -49.86 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -90.41 6.63 -83.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594974700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.808 kcal (2) G-P(sol) polarization free energy of solvation -90.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds