Wall clock time and date at job start Tue Mar 31 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.47097 * 2 1 4 4 C 1.52990 * 109.46896 * 184.99899 * 3 2 1 5 5 C 1.52999 * 109.47406 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47042 * 304.99824 * 3 2 1 7 7 C 1.34774 * 120.00119 * 300.00119 * 6 3 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 3 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 3 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 C 1.50694 * 109.46983 * 64.99777 * 3 2 1 26 26 O 1.20827 * 120.00348 * 25.00143 * 25 3 2 27 27 O 1.34228 * 120.00226 * 204.99711 * 25 3 2 28 28 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47136 * 300.00020 * 1 2 3 30 30 H 1.09008 * 109.46660 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.46733 * 239.99736 * 2 1 3 32 32 H 1.09000 * 109.46501 * 119.99730 * 2 1 3 33 33 H 1.09007 * 109.47499 * 299.99806 * 4 3 2 34 34 H 1.09002 * 109.47490 * 59.99626 * 4 3 2 35 35 H 1.09003 * 109.47543 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47148 * 300.00164 * 5 4 3 37 37 H 1.09001 * 109.46782 * 59.99932 * 5 4 3 38 38 H 0.97001 * 119.99420 * 120.00164 * 6 3 2 39 39 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 40 40 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 41 41 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 42 42 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 43 43 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 44 44 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 46 46 H 0.96694 * 117.00457 * 180.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 4.0749 2.8868 -0.1263 6 7 1.4560 2.1670 -1.1315 7 6 1.6793 1.7426 -2.3910 8 8 2.3635 0.7608 -2.5878 9 6 1.0789 2.4882 -3.5550 10 6 1.4770 1.8140 -4.8426 11 6 2.6358 2.1972 -5.4936 12 6 3.0042 1.5814 -6.6756 13 6 2.2189 0.5767 -7.2064 14 6 1.0522 0.1936 -6.5583 15 8 0.2752 -0.7893 -7.0807 16 6 0.6266 -1.2694 -8.2906 17 1 1.5368 -0.9302 -8.7626 18 6 -0.1806 -2.1988 -8.9288 19 7 -1.2896 -2.6117 -8.3541 20 14 0.3059 -2.8634 -10.6054 21 1 1.1425 -4.0781 -10.4325 22 1 -0.9164 -3.2096 -11.3745 23 1 1.0784 -1.8310 -11.3420 24 6 0.6845 0.8147 -5.3715 25 6 1.6414 2.1162 1.2876 26 8 1.4354 1.4543 2.2773 27 8 1.5151 3.4517 1.3353 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9995 0.9053 0.7162 34 1 3.8533 0.9569 -1.0570 35 1 5.1613 2.8880 -0.2154 36 1 3.6403 3.4254 -0.9684 37 1 3.7865 3.3745 0.8048 38 1 0.9085 2.9520 -0.9740 39 1 1.4427 3.5157 -3.5548 40 1 -0.0073 2.4874 -3.4655 41 1 3.2541 2.9791 -5.0778 42 1 3.9092 1.8830 -7.1817 43 1 2.5098 0.0925 -8.1269 44 1 -1.8544 -3.2615 -8.8007 45 1 -0.2205 0.5164 -4.8631 46 1 1.2577 3.8384 2.1833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595093019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:49 Heat of formation + Delta-G solvation = -135.994231 kcal Electronic energy + Delta-G solvation = -29355.543916 eV Core-core repulsion = 25210.900278 eV Total energy + Delta-G solvation = -4144.643638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44383 -39.80072 -38.83196 -36.93105 -36.57973 -35.97212 -32.91281 -32.37771 -32.24795 -31.60422 -29.16979 -27.80689 -26.56096 -25.18478 -24.46311 -22.24816 -21.82683 -21.44354 -20.41957 -19.67983 -18.74490 -18.01935 -17.50627 -16.85637 -16.63644 -16.23489 -15.67246 -15.02299 -14.79269 -14.59137 -14.36710 -14.29784 -14.10477 -13.73691 -13.65458 -13.44178 -13.30572 -13.27934 -13.02718 -12.56648 -12.38549 -12.12815 -11.86228 -11.79544 -11.68236 -11.53368 -11.37778 -11.28542 -11.23029 -10.94257 -10.86238 -10.78149 -10.75159 -10.58245 -10.41637 -9.56299 -9.29599 -9.23540 -8.79638 -8.02778 -7.17433 -6.40133 -3.99071 1.68472 2.12906 2.43437 2.50696 2.70686 3.03653 3.16358 3.16583 3.21214 4.00384 4.23759 4.50902 4.56590 4.79759 4.90274 5.01006 5.07346 5.14701 5.17173 5.20011 5.27212 5.29977 5.49321 5.53290 5.61168 5.69504 5.70036 5.78618 5.86824 5.90612 5.96768 5.97131 6.03808 6.06851 6.19987 6.22228 6.27597 6.37986 6.69807 6.95866 7.11595 7.30392 7.35931 7.41303 7.45023 7.48692 7.87095 8.05001 8.25176 9.05777 9.76883 10.78174 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002583 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.466762 B =10838.861157 C =11597.103688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.201 3.799 4 C -0.139 4.139 5 C -0.151 4.151 6 N -0.727 5.727 7 C 0.521 3.479 8 O -0.509 6.509 9 C -0.093 4.093 10 C -0.033 4.033 11 C -0.195 4.195 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 C 0.487 3.513 26 O -0.501 6.501 27 O -0.512 6.512 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.406 0.594 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.269 0.731 45 H 0.113 0.887 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 13.755 17.309 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.208 4.208 6 N -0.383 5.383 7 C 0.308 3.692 8 O -0.382 6.382 9 C -0.133 4.133 10 C -0.033 4.033 11 C -0.214 4.214 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.193 4.193 25 C 0.327 3.673 26 O -0.386 6.386 27 O -0.324 6.324 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.241 0.759 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.131 0.869 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.101 12.382 17.093 21.971 hybrid contribution -0.159 0.326 -0.098 0.376 sum 5.942 12.709 16.995 22.037 Atomic orbital electron populations 1.21751 0.94988 1.02597 1.01464 1.21966 0.97102 0.92751 1.05117 1.20308 0.95599 0.92341 0.80416 1.22039 0.90956 0.99126 1.05571 1.21793 1.01157 0.95618 1.02232 1.46022 1.54844 1.32579 1.04896 1.20725 0.80485 0.84920 0.83027 1.90704 1.37275 1.25618 1.84637 1.20589 1.02220 0.99649 0.90822 1.18622 0.95090 0.96128 0.93493 1.20335 0.98394 1.04503 0.98217 1.20672 0.98004 0.95372 0.95276 1.21173 0.97581 1.02630 1.03586 1.19275 0.90105 0.88032 0.92450 1.83975 1.47673 1.43459 1.33256 1.21309 1.08494 1.24001 0.92867 0.89149 1.25264 0.95134 0.96533 0.99586 1.70037 1.11989 1.29778 1.38164 0.85732 0.78187 0.79316 0.80302 1.19922 1.20303 1.19232 1.19937 1.02176 0.99896 0.97281 1.23432 0.72656 0.80316 0.90851 1.90745 1.45489 1.65504 1.36904 1.84560 1.81349 1.23352 1.43141 0.91883 0.93190 0.92366 0.87738 0.90063 0.90683 0.87327 0.92262 0.91968 0.92768 0.75909 0.88269 0.88209 0.87969 0.87551 0.85687 0.92113 0.86880 0.73064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.49 37.16 0.35 -1.36 16 2 C -0.13 -1.54 4.37 -26.73 -0.12 -1.65 16 3 C 0.20 2.04 0.41 -132.98 -0.05 1.98 16 4 C -0.14 -1.41 4.77 -26.74 -0.13 -1.53 16 5 C -0.15 -1.30 9.35 37.16 0.35 -0.95 16 6 N -0.73 -6.90 3.34 -48.69 -0.16 -7.06 16 7 C 0.52 6.66 7.03 -10.98 -0.08 6.59 16 8 O -0.51 -8.56 12.30 5.56 0.07 -8.49 16 9 C -0.09 -1.14 5.83 -29.03 -0.17 -1.31 16 10 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 11 C -0.20 -3.39 9.70 -39.53 -0.38 -3.78 16 12 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.13 9.17 -39.40 -0.36 -5.50 16 14 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 15 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 16 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 17 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 20 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C -0.17 -3.70 9.65 -39.39 -0.38 -4.08 16 25 C 0.49 4.47 5.60 36.00 0.20 4.67 16 26 O -0.50 -5.91 16.04 -18.75 -0.30 -6.21 16 27 O -0.51 -2.99 11.32 -39.25 -0.44 -3.43 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.54 6.87 -51.93 -0.36 0.19 16 30 H 0.06 0.67 7.29 -51.92 -0.38 0.29 16 31 H 0.10 1.45 6.32 -51.93 -0.33 1.13 16 32 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.35 6.17 -51.93 -0.32 1.03 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 37 H 0.05 0.42 6.40 -51.93 -0.33 0.09 16 38 H 0.41 2.87 7.91 -40.82 -0.32 2.54 16 39 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.41 0.76 9.10 45.56 0.41 1.18 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -34.95 377.98 -6.59 -41.54 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.50 Total: 8.30 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.69 Total: -16.00 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.60 Total: -31.95 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.68 Total: -23.36 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.95 -6.59 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595093019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.456 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds