Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.47097 * 2 1 4 4 C 1.52990 * 109.46896 * 184.99899 * 3 2 1 5 5 C 1.52999 * 109.47406 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47042 * 304.99824 * 3 2 1 7 7 C 1.34774 * 120.00119 * 300.00119 * 6 3 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 3 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 3 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 C 1.50694 * 109.46983 * 64.99777 * 3 2 1 26 26 O 1.20827 * 120.00348 * 25.00143 * 25 3 2 27 27 O 1.34228 * 120.00226 * 204.99711 * 25 3 2 28 28 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47136 * 300.00020 * 1 2 3 30 30 H 1.09008 * 109.46660 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.46733 * 239.99736 * 2 1 3 32 32 H 1.09000 * 109.46501 * 119.99730 * 2 1 3 33 33 H 1.09007 * 109.47499 * 299.99806 * 4 3 2 34 34 H 1.09002 * 109.47490 * 59.99626 * 4 3 2 35 35 H 1.09003 * 109.47543 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47148 * 300.00164 * 5 4 3 37 37 H 1.09001 * 109.46782 * 59.99932 * 5 4 3 38 38 H 0.97001 * 119.99420 * 120.00164 * 6 3 2 39 39 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 40 40 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 41 41 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 42 42 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 43 43 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 44 44 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 46 46 H 0.96694 * 117.00457 * 180.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 -0.1257 5 6 4.0749 2.8868 -0.1263 6 7 1.4560 2.1670 -1.1315 7 6 1.6793 1.7426 -2.3910 8 8 2.3635 0.7608 -2.5878 9 6 1.0789 2.4882 -3.5550 10 6 1.4770 1.8140 -4.8426 11 6 2.6358 2.1972 -5.4936 12 6 3.0042 1.5814 -6.6756 13 6 2.2189 0.5767 -7.2064 14 6 1.0522 0.1936 -6.5583 15 8 0.2752 -0.7893 -7.0807 16 6 0.6266 -1.2694 -8.2906 17 1 1.5368 -0.9302 -8.7626 18 6 -0.1806 -2.1988 -8.9288 19 7 -1.2896 -2.6117 -8.3541 20 14 0.3059 -2.8634 -10.6054 21 1 1.1425 -4.0781 -10.4325 22 1 -0.9164 -3.2096 -11.3745 23 1 1.0784 -1.8310 -11.3420 24 6 0.6845 0.8147 -5.3715 25 6 1.6414 2.1162 1.2876 26 8 1.4354 1.4543 2.2773 27 8 1.5151 3.4517 1.3353 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9995 0.9053 0.7162 34 1 3.8533 0.9569 -1.0570 35 1 5.1613 2.8880 -0.2154 36 1 3.6403 3.4254 -0.9684 37 1 3.7865 3.3745 0.8048 38 1 0.9085 2.9520 -0.9740 39 1 1.4427 3.5157 -3.5548 40 1 -0.0073 2.4874 -3.4655 41 1 3.2541 2.9791 -5.0778 42 1 3.9092 1.8830 -7.1817 43 1 2.5098 0.0925 -8.1269 44 1 -1.8544 -3.2615 -8.8007 45 1 -0.2205 0.5164 -4.8631 46 1 1.2577 3.8384 2.1833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595093019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = -160.077381 kcal Electronic energy + Delta-G solvation = -29356.588239 eV Core-core repulsion = 25210.900278 eV Total energy + Delta-G solvation = -4145.687961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25877 -40.95635 -40.33928 -38.34153 -37.40262 -37.04621 -34.33603 -33.91701 -33.21631 -32.86251 -30.82993 -28.89723 -27.73929 -27.12432 -25.24698 -23.30250 -23.08212 -22.92271 -21.64303 -20.57038 -19.68510 -19.31455 -18.84983 -18.49469 -17.50842 -17.04228 -16.81784 -16.61427 -16.17303 -16.07758 -15.69053 -15.42485 -15.20564 -15.11305 -14.82813 -14.55045 -14.49059 -14.25008 -14.10093 -13.91189 -13.83421 -13.57038 -12.96205 -12.82093 -12.78523 -12.67267 -12.46354 -12.40987 -12.32895 -12.22377 -12.19088 -12.10617 -12.08997 -11.79880 -11.68586 -11.17181 -10.79855 -10.61685 -10.14965 -9.59007 -8.93570 -8.45438 -6.13615 0.55362 0.80315 0.96955 1.34582 1.44246 1.52310 1.71173 1.84330 2.12021 2.18866 2.87230 3.20970 3.42093 3.48309 3.69130 3.84423 4.04116 4.14929 4.18090 4.22250 4.34594 4.36369 4.39950 4.41845 4.48729 4.62694 4.69091 4.70871 4.76899 4.78544 4.95820 5.01075 5.07405 5.10813 5.14566 5.16117 5.18568 5.34451 5.35016 5.39508 5.51425 5.69512 5.77148 5.80107 6.05226 6.27921 6.56047 6.88075 6.99469 7.32163 7.82008 8.78172 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002583 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.466762 B =10838.861157 C =11597.103688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.200 3.800 4 C -0.138 4.138 5 C -0.145 4.145 6 N -0.706 5.706 7 C 0.524 3.476 8 O -0.555 6.555 9 C -0.092 4.092 10 C -0.022 4.022 11 C -0.177 4.177 12 C -0.075 4.075 13 C -0.248 4.248 14 C 0.111 3.889 15 O -0.236 6.236 16 C -0.412 4.412 17 H 0.099 0.901 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.190 4.190 25 C 0.500 3.500 26 O -0.528 6.528 27 O -0.497 6.497 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.422 0.578 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.115 0.885 44 H 0.272 0.728 45 H 0.105 0.895 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 17.309 18.418 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.112 3.888 4 C -0.176 4.176 5 C -0.203 4.203 6 N -0.363 5.363 7 C 0.312 3.688 8 O -0.432 6.432 9 C -0.131 4.131 10 C -0.023 4.023 11 C -0.195 4.195 12 C -0.093 4.093 13 C -0.267 4.267 14 C 0.061 3.939 15 O -0.143 6.143 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.837 3.163 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.210 4.210 25 C 0.341 3.659 26 O -0.417 6.417 27 O -0.311 6.311 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.163 0.837 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 7.777 16.042 18.258 25.519 hybrid contribution -0.547 -0.504 -0.179 0.765 sum 7.231 15.538 18.079 24.911 Atomic orbital electron populations 1.21715 0.94750 1.02381 1.01588 1.21881 0.97264 0.94063 1.03763 1.20182 0.95748 0.91614 0.81269 1.21981 0.90893 1.00298 1.04410 1.21764 1.01451 0.94193 1.02853 1.45756 1.54156 1.32581 1.03788 1.20767 0.79833 0.84229 0.83958 1.90723 1.39542 1.27586 1.85347 1.20708 1.03749 1.01085 0.87546 1.19146 0.94016 0.94114 0.95034 1.20967 0.97824 1.03918 0.96787 1.21118 0.98479 0.93834 0.95840 1.21282 0.97678 1.04100 1.03626 1.19888 0.91190 0.88689 0.94103 1.83933 1.49946 1.46210 1.34183 1.21802 1.09152 1.24560 0.93355 0.88327 1.26578 0.94921 0.96540 1.04069 1.70186 1.13856 1.31472 1.40574 0.84599 0.78241 0.78847 0.74583 1.18995 1.19425 1.17597 1.20217 1.03005 1.01149 0.96610 1.22967 0.72041 0.81192 0.89665 1.90754 1.46882 1.66424 1.37599 1.84487 1.80625 1.21178 1.44800 0.92480 0.92388 0.92645 0.90394 0.90130 0.90415 0.89798 0.91820 0.91814 0.91599 0.73993 0.83660 0.86181 0.83357 0.83926 0.86763 0.91912 0.87652 0.70478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.49 71.99 0.68 -2.61 16 2 C -0.13 -3.08 4.37 30.60 0.13 -2.94 16 3 C 0.20 3.70 0.41 2.85 0.00 3.70 16 4 C -0.14 -2.58 4.77 30.59 0.15 -2.44 16 5 C -0.15 -2.05 9.35 71.98 0.67 -1.37 16 6 N -0.71 -11.40 3.34 -426.34 -1.42 -12.82 16 7 C 0.52 12.14 7.03 87.66 0.62 12.76 16 8 O -0.56 -18.32 12.30 -3.04 -0.04 -18.35 16 9 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 10 C -0.02 -0.74 4.37 -19.88 -0.09 -0.82 16 11 C -0.18 -5.46 9.70 22.30 0.22 -5.24 16 12 C -0.07 -2.64 10.04 22.25 0.22 -2.42 16 13 C -0.25 -11.27 9.17 22.39 0.21 -11.06 16 14 C 0.11 5.76 6.65 22.58 0.15 5.91 16 15 O -0.24 -14.72 9.76 -22.74 -0.22 -14.95 16 16 C -0.41 -24.84 9.49 67.92 0.64 -24.20 16 17 H 0.10 5.48 5.21 -2.91 -0.02 5.47 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.99 13.67 21.61 0.30 -57.69 16 20 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.19 -8.32 9.65 22.39 0.22 -8.10 16 25 C 0.50 7.82 5.60 71.23 0.40 8.22 16 26 O -0.53 -11.42 16.04 21.96 0.35 -11.07 16 27 O -0.50 -3.73 11.32 -51.40 -0.58 -4.31 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.20 6.87 -2.39 -0.02 1.18 16 30 H 0.05 1.24 7.29 -2.38 -0.02 1.23 16 31 H 0.08 2.27 6.32 -2.39 -0.02 2.26 16 32 H 0.08 1.86 7.69 -2.39 -0.02 1.84 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 2.06 6.17 -2.39 -0.01 2.04 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.88 7.60 -2.39 -0.02 0.86 16 37 H 0.07 0.77 6.40 -2.39 -0.02 0.76 16 38 H 0.42 4.17 7.91 -92.71 -0.73 3.44 16 39 H 0.15 1.74 8.09 -2.39 -0.02 1.72 16 40 H 0.12 2.07 8.08 -2.39 -0.02 2.06 16 41 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 43 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.43 -0.30 9.10 -74.06 -0.67 -0.97 16 Total: -1.00 -84.02 377.98 4.89 -79.12 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.37 Total: 27.28 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 4.86 Total: -33.27 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.13 Total: -70.51 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.49 Total: -48.68 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -84.02 4.89 -79.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595093019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.956 kcal (2) G-P(sol) polarization free energy of solvation -84.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds