Wall clock time and date at job start Tue Mar 31 2020 19:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47133 * 2 1 4 4 H 1.09000 * 109.46830 * 303.71854 * 3 2 1 5 5 O 1.42895 * 109.47198 * 63.72139 * 3 2 1 6 6 C 1.35903 * 117.00206 * 256.03875 * 5 3 2 7 7 C 1.38753 * 120.05245 * 5.64462 * 6 5 3 8 8 C 1.38128 * 119.94264 * 180.02562 * 7 6 5 9 9 C 1.38284 * 120.05540 * 0.02626 * 8 7 6 10 10 C 1.38251 * 120.11260 * 359.94817 * 9 8 7 11 11 C 1.50698 * 119.96957 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.05459 * 0.28487 * 10 9 8 13 13 C 1.50696 * 109.46904 * 183.72431 * 3 2 1 14 14 O 1.21293 * 119.99713 * 251.29033 * 13 3 2 15 15 N 1.34776 * 120.00469 * 71.29160 * 13 3 2 16 16 C 1.37107 * 119.99615 * 4.36934 * 15 13 3 17 17 H 1.08003 * 119.99776 * 317.75156 * 16 15 13 18 18 C 1.38951 * 119.99860 * 137.75565 * 16 15 13 19 19 N 1.31412 * 120.00032 * 169.25388 * 18 16 15 20 20 Si 1.86802 * 120.00025 * 349.25010 * 18 16 15 21 21 H 1.48499 * 109.47053 * 92.01889 * 20 18 16 22 22 H 1.48498 * 109.47053 * 212.01950 * 20 18 16 23 23 H 1.48503 * 109.47072 * 332.01991 * 20 18 16 24 24 C 1.46497 * 120.00295 * 184.37371 * 15 13 3 25 25 C 1.52999 * 109.47477 * 90.00978 * 24 15 13 26 26 C 1.50694 * 109.47351 * 179.97438 * 25 24 15 27 27 O 1.20826 * 120.00091 * 0.02562 * 26 25 24 28 28 O 1.34224 * 120.00161 * 179.97438 * 26 25 24 29 29 H 1.08993 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47126 * 300.00115 * 1 2 3 31 31 H 1.08997 * 109.46986 * 60.00316 * 1 2 3 32 32 H 1.08996 * 109.47076 * 239.99925 * 2 1 3 33 33 H 1.08997 * 109.46986 * 119.99684 * 2 1 3 34 34 H 1.07998 * 120.02961 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.96945 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.94738 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46856 * 90.00622 * 11 10 9 38 38 H 1.09007 * 109.46741 * 210.00195 * 11 10 9 39 39 H 1.08991 * 109.47339 * 330.00383 * 11 10 9 40 40 H 1.07994 * 120.02890 * 179.73712 * 12 10 9 41 41 H 0.96996 * 119.99858 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46930 * 210.00899 * 24 15 13 43 43 H 1.09004 * 109.46875 * 330.00519 * 24 15 13 44 44 H 1.08999 * 109.46774 * 300.00388 * 25 24 15 45 45 H 1.09004 * 109.46963 * 59.99286 * 25 24 15 46 46 H 0.96707 * 117.00378 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6233 1.9752 -0.8548 5 8 1.6365 2.0905 1.2080 6 6 0.6013 2.9668 1.1220 7 6 -0.0892 3.1116 -0.0728 8 6 -1.1406 4.0033 -0.1578 9 6 -1.5050 4.7517 0.9465 10 6 -0.8190 4.6089 2.1382 11 6 -1.2191 5.4257 3.3397 12 6 0.2366 3.7218 2.2270 13 6 3.5442 1.4435 -0.0923 14 8 4.2106 1.7592 0.8707 15 7 4.1489 1.0936 -1.2448 16 6 3.3969 0.8235 -2.3590 17 1 2.4919 0.2407 -2.2714 18 6 3.7992 1.2997 -3.6008 19 7 3.2058 0.8716 -4.6924 20 14 5.1835 2.5484 -3.7187 21 1 6.4760 1.8392 -3.8966 22 1 4.9458 3.4429 -4.8799 23 1 5.2293 3.3557 -2.4731 24 6 5.6097 1.0017 -1.3071 25 6 6.0473 -0.4189 -0.9447 26 6 7.5499 -0.5136 -1.0093 27 8 8.2038 0.4558 -1.3135 28 8 8.1619 -1.6746 -0.7279 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1958 2.5282 -0.9358 35 1 -1.6781 4.1166 -1.0877 36 1 -2.3271 5.4487 0.8779 37 1 -1.9675 4.8817 3.9160 38 1 -0.3435 5.6088 3.9626 39 1 -1.6357 6.3773 3.0098 40 1 0.7749 3.6137 3.1570 41 1 3.4869 1.2037 -5.5593 42 1 5.9459 1.2391 -2.3164 43 1 6.0485 1.7080 -0.6023 44 1 5.7109 -0.6563 0.0646 45 1 5.6083 -1.1252 -1.6494 46 1 9.1274 -1.6865 -0.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595357238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:37 Heat of formation + Delta-G solvation = -131.247032 kcal Electronic energy + Delta-G solvation = -29816.184140 eV Core-core repulsion = 25671.746356 eV Total energy + Delta-G solvation = -4144.437784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37277 -40.01198 -38.91164 -37.30352 -36.00056 -35.19613 -33.39648 -32.41615 -32.36085 -30.88706 -29.93276 -27.21346 -26.85469 -25.19535 -24.29026 -22.35741 -22.11268 -21.10822 -20.51038 -19.06526 -18.06210 -17.82607 -17.40381 -16.45338 -16.34481 -15.74480 -15.64504 -15.48533 -15.13439 -14.85823 -14.32767 -14.23852 -13.84797 -13.68029 -13.37762 -13.31221 -13.01480 -12.87251 -12.73724 -12.63644 -12.42769 -12.19611 -11.99635 -11.73405 -11.53362 -11.46025 -11.39758 -11.34857 -11.23196 -11.02064 -10.74472 -10.59411 -10.37272 -10.10120 -10.05578 -9.90115 -9.33435 -8.74335 -8.61990 -8.01418 -7.84764 -6.61667 -4.37475 1.49582 1.66374 2.44657 3.01210 3.09270 3.16750 3.24578 3.34543 3.55357 3.95062 4.00267 4.41715 4.77043 4.92433 5.02694 5.16100 5.23231 5.28195 5.29710 5.38661 5.41989 5.45526 5.55605 5.57933 5.62857 5.71089 5.78188 5.87887 5.91660 5.94797 5.97466 6.07964 6.17274 6.22939 6.28835 6.37885 6.42296 6.54893 6.62829 6.65902 6.66946 6.73333 6.99136 7.16892 7.75250 7.87323 8.03148 8.09446 8.74248 9.09813 9.41863 10.46296 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003609 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.038711 B = 7755.849093 C = 8436.194811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.080 3.920 4 H 0.110 0.890 5 O -0.288 6.288 6 C 0.146 3.854 7 C -0.216 4.216 8 C -0.075 4.075 9 C -0.169 4.169 10 C -0.054 4.054 11 C -0.112 4.112 12 C -0.159 4.159 13 C 0.488 3.512 14 O -0.572 6.572 15 N -0.463 5.463 16 C -0.363 4.363 17 H 0.116 0.884 18 C 0.074 3.926 19 N -0.858 5.858 20 Si 0.876 3.124 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.260 1.260 24 C 0.113 3.887 25 C -0.124 4.124 26 C 0.484 3.516 27 O -0.519 6.519 28 O -0.519 6.519 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.278 0.722 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 0.337 7.626 9.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.021 3.979 4 H 0.128 0.872 5 O -0.200 6.200 6 C 0.100 3.900 7 C -0.234 4.234 8 C -0.093 4.093 9 C -0.187 4.187 10 C -0.054 4.054 11 C -0.168 4.168 12 C -0.178 4.178 13 C 0.276 3.724 14 O -0.454 6.454 15 N -0.186 5.186 16 C -0.489 4.489 17 H 0.133 0.867 18 C -0.135 4.135 19 N -0.493 5.493 20 Si 0.704 3.296 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.010 4.010 25 C -0.163 4.163 26 C 0.327 3.673 27 O -0.407 6.407 28 O -0.331 6.331 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.145 0.855 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.450 0.717 7.996 9.703 hybrid contribution 1.387 0.462 -0.770 1.653 sum -4.063 1.180 7.226 8.374 Atomic orbital electron populations 1.21818 0.95311 1.01717 1.01885 1.21935 0.96445 0.94602 1.04215 1.22227 0.93756 0.94854 0.87086 0.87230 1.86152 1.46484 1.53562 1.33832 1.19108 0.87508 0.89372 0.93992 1.21479 0.99683 1.04058 0.98212 1.20904 0.95741 0.94457 0.98230 1.20841 1.02053 1.02767 0.93070 1.19628 0.94470 0.95873 0.95437 1.20770 1.01795 0.98815 0.95456 1.20260 1.00302 0.99009 0.98212 1.20181 0.88970 0.79390 0.83888 1.90597 1.66065 1.50733 1.37993 1.43578 1.03755 1.61135 1.10101 1.19305 1.09780 1.35754 0.84103 0.86717 1.25377 0.97209 0.95660 0.95265 1.69641 1.40922 1.40503 0.98212 0.86943 0.81782 0.82177 0.78664 1.19441 1.21414 1.18459 1.21450 0.83240 0.94068 1.02228 1.21764 0.86414 1.02123 1.05965 1.23676 0.92223 0.79608 0.71834 1.90706 1.67568 1.38085 1.44374 1.84574 1.27785 1.38172 1.82564 0.92519 0.92824 0.92294 0.88057 0.91338 0.84421 0.85959 0.86431 0.91191 0.91499 0.91578 0.85502 0.91146 0.90735 0.89941 0.87479 0.86556 0.73785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.64 37.16 0.32 -1.83 16 2 C -0.13 -2.25 5.40 -26.73 -0.14 -2.39 16 3 C 0.08 1.55 1.75 -27.88 -0.05 1.50 16 4 H 0.11 2.14 4.70 -51.93 -0.24 1.90 16 5 O -0.29 -5.64 9.02 -39.09 -0.35 -5.99 16 6 C 0.15 2.52 5.73 -39.22 -0.22 2.30 16 7 C -0.22 -3.41 7.83 -39.43 -0.31 -3.72 16 8 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 9 C -0.17 -2.13 9.70 -39.56 -0.38 -2.51 16 10 C -0.05 -0.70 5.88 -104.64 -0.62 -1.32 16 11 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 12 C -0.16 -2.44 9.64 -39.43 -0.38 -2.82 16 13 C 0.49 11.03 6.98 -10.99 -0.08 10.95 16 14 O -0.57 -14.35 16.09 -14.11 -0.23 -14.58 16 15 N -0.46 -10.42 2.16 -114.81 -0.25 -10.67 16 16 C -0.36 -8.51 8.53 -14.93 -0.13 -8.63 16 17 H 0.12 2.68 5.43 -52.48 -0.29 2.39 16 18 C 0.07 1.82 5.44 -17.47 -0.10 1.72 16 19 N -0.86 -22.03 13.96 55.50 0.77 -21.26 16 20 Si 0.88 20.38 24.67 -169.99 -4.19 16.19 16 21 H -0.27 -6.20 6.73 56.52 0.38 -5.82 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.26 -6.28 6.98 56.52 0.39 -5.89 16 24 C 0.11 2.45 3.36 -4.04 -0.01 2.44 16 25 C -0.12 -2.21 6.13 -27.89 -0.17 -2.38 16 26 C 0.48 8.21 8.33 36.00 0.30 8.51 16 27 O -0.52 -10.36 16.74 -18.75 -0.31 -10.67 16 28 O -0.52 -6.78 13.42 -39.24 -0.53 -7.30 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.78 6.92 -51.93 -0.36 0.42 16 31 H 0.06 0.83 7.09 -51.93 -0.37 0.46 16 32 H 0.10 1.76 5.65 -51.93 -0.29 1.47 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.14 2.20 4.65 -52.49 -0.24 1.96 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.07 1.71 2.89 -51.93 -0.15 1.56 16 43 H 0.08 1.88 7.32 -51.93 -0.38 1.50 16 44 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 45 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 46 H 0.40 3.34 9.10 45.56 0.41 3.75 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -30.74 373.41 -6.76 -37.50 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.29 Total: 11.47 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.01 Total: -0.30 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.53 Total: -31.93 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.42 Total: -38.55 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.19 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.74 -6.76 -37.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595357238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.749 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds