Wall clock time and date at job start Tue Mar 31 2020 19:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47133 * 2 1 4 4 H 1.09000 * 109.46830 * 303.71854 * 3 2 1 5 5 O 1.42895 * 109.47198 * 63.72139 * 3 2 1 6 6 C 1.35903 * 117.00206 * 256.03875 * 5 3 2 7 7 C 1.38753 * 120.05245 * 5.64462 * 6 5 3 8 8 C 1.38128 * 119.94264 * 180.02562 * 7 6 5 9 9 C 1.38284 * 120.05540 * 0.02626 * 8 7 6 10 10 C 1.38251 * 120.11260 * 359.94817 * 9 8 7 11 11 C 1.50698 * 119.96957 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.05459 * 0.28487 * 10 9 8 13 13 C 1.50696 * 109.46904 * 183.72431 * 3 2 1 14 14 O 1.21293 * 119.99713 * 251.29033 * 13 3 2 15 15 N 1.34776 * 120.00469 * 71.29160 * 13 3 2 16 16 C 1.37107 * 119.99615 * 4.36934 * 15 13 3 17 17 H 1.08003 * 119.99776 * 317.75156 * 16 15 13 18 18 C 1.38951 * 119.99860 * 137.75565 * 16 15 13 19 19 N 1.31412 * 120.00032 * 169.25388 * 18 16 15 20 20 Si 1.86802 * 120.00025 * 349.25010 * 18 16 15 21 21 H 1.48499 * 109.47053 * 92.01889 * 20 18 16 22 22 H 1.48498 * 109.47053 * 212.01950 * 20 18 16 23 23 H 1.48503 * 109.47072 * 332.01991 * 20 18 16 24 24 C 1.46497 * 120.00295 * 184.37371 * 15 13 3 25 25 C 1.52999 * 109.47477 * 90.00978 * 24 15 13 26 26 C 1.50694 * 109.47351 * 179.97438 * 25 24 15 27 27 O 1.20826 * 120.00091 * 0.02562 * 26 25 24 28 28 O 1.34224 * 120.00161 * 179.97438 * 26 25 24 29 29 H 1.08993 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47126 * 300.00115 * 1 2 3 31 31 H 1.08997 * 109.46986 * 60.00316 * 1 2 3 32 32 H 1.08996 * 109.47076 * 239.99925 * 2 1 3 33 33 H 1.08997 * 109.46986 * 119.99684 * 2 1 3 34 34 H 1.07998 * 120.02961 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.96945 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.94738 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46856 * 90.00622 * 11 10 9 38 38 H 1.09007 * 109.46741 * 210.00195 * 11 10 9 39 39 H 1.08991 * 109.47339 * 330.00383 * 11 10 9 40 40 H 1.07994 * 120.02890 * 179.73712 * 12 10 9 41 41 H 0.96996 * 119.99858 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46930 * 210.00899 * 24 15 13 43 43 H 1.09004 * 109.46875 * 330.00519 * 24 15 13 44 44 H 1.08999 * 109.46774 * 300.00388 * 25 24 15 45 45 H 1.09004 * 109.46963 * 59.99286 * 25 24 15 46 46 H 0.96707 * 117.00378 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6233 1.9752 -0.8548 5 8 1.6365 2.0905 1.2080 6 6 0.6013 2.9668 1.1220 7 6 -0.0892 3.1116 -0.0728 8 6 -1.1406 4.0033 -0.1578 9 6 -1.5050 4.7517 0.9465 10 6 -0.8190 4.6089 2.1382 11 6 -1.2191 5.4257 3.3397 12 6 0.2366 3.7218 2.2270 13 6 3.5442 1.4435 -0.0923 14 8 4.2106 1.7592 0.8707 15 7 4.1489 1.0936 -1.2448 16 6 3.3969 0.8235 -2.3590 17 1 2.4919 0.2407 -2.2714 18 6 3.7992 1.2997 -3.6008 19 7 3.2058 0.8716 -4.6924 20 14 5.1835 2.5484 -3.7187 21 1 6.4760 1.8392 -3.8966 22 1 4.9458 3.4429 -4.8799 23 1 5.2293 3.3557 -2.4731 24 6 5.6097 1.0017 -1.3071 25 6 6.0473 -0.4189 -0.9447 26 6 7.5499 -0.5136 -1.0093 27 8 8.2038 0.4558 -1.3135 28 8 8.1619 -1.6746 -0.7279 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1958 2.5282 -0.9358 35 1 -1.6781 4.1166 -1.0877 36 1 -2.3271 5.4487 0.8779 37 1 -1.9675 4.8817 3.9160 38 1 -0.3435 5.6088 3.9626 39 1 -1.6357 6.3773 3.0098 40 1 0.7749 3.6137 3.1570 41 1 3.4869 1.2037 -5.5593 42 1 5.9459 1.2391 -2.3164 43 1 6.0485 1.7080 -0.6023 44 1 5.7109 -0.6563 0.0646 45 1 5.6083 -1.1252 -1.6494 46 1 9.1274 -1.6865 -0.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595357238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:37 Heat of formation + Delta-G solvation = -149.026601 kcal Electronic energy + Delta-G solvation = -29816.955120 eV Core-core repulsion = 25671.746356 eV Total energy + Delta-G solvation = -4145.208764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83521 -41.34314 -40.42383 -38.60672 -37.33846 -36.96655 -34.76605 -34.24596 -33.39177 -32.49665 -31.09303 -28.64366 -27.80856 -27.03213 -25.86210 -23.47918 -23.35960 -22.46849 -21.92208 -20.74358 -19.49388 -19.19418 -18.92084 -18.10309 -17.86523 -17.08054 -16.97031 -16.81876 -16.55480 -16.44075 -15.96988 -15.60987 -15.23608 -14.95649 -14.73125 -14.55422 -14.48465 -14.23380 -14.17080 -14.10100 -13.70670 -13.59470 -13.23780 -13.06700 -12.97186 -12.85226 -12.73221 -12.63913 -12.52616 -12.42799 -12.23845 -11.90974 -11.84116 -11.73364 -11.66009 -11.36807 -11.18235 -10.52321 -9.87328 -9.70439 -9.06219 -8.55542 -6.29452 0.40026 0.52740 1.09027 1.12886 1.25983 1.34164 1.59997 1.72220 2.09125 2.14380 2.83503 2.83969 2.89072 3.68739 3.72425 3.80917 3.88186 3.94916 3.97997 4.04974 4.23455 4.26126 4.35833 4.44320 4.48948 4.50164 4.53494 4.59733 4.63002 4.78689 4.84741 4.87916 4.90670 5.02683 5.05331 5.14983 5.27792 5.31722 5.34039 5.47047 5.50498 5.55587 5.67663 5.90905 6.01052 6.14459 6.48159 6.85274 6.91437 7.23962 7.58553 8.55272 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003609 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.038711 B = 7755.849093 C = 8436.194811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.087 3.913 4 H 0.106 0.894 5 O -0.310 6.310 6 C 0.115 3.885 7 C -0.229 4.229 8 C -0.078 4.078 9 C -0.163 4.163 10 C -0.052 4.052 11 C -0.110 4.110 12 C -0.176 4.176 13 C 0.480 3.520 14 O -0.602 6.602 15 N -0.466 5.466 16 C -0.348 4.348 17 H 0.118 0.882 18 C 0.050 3.950 19 N -0.883 5.883 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.280 1.280 24 C 0.109 3.891 25 C -0.118 4.118 26 C 0.495 3.505 27 O -0.554 6.554 28 O -0.503 6.503 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.281 0.719 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 0.385 8.159 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.028 3.972 4 H 0.123 0.877 5 O -0.223 6.223 6 C 0.070 3.930 7 C -0.247 4.247 8 C -0.096 4.096 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.167 4.167 12 C -0.195 4.195 13 C 0.270 3.730 14 O -0.486 6.486 15 N -0.189 5.189 16 C -0.475 4.475 17 H 0.135 0.865 18 C -0.156 4.156 19 N -0.519 5.519 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.206 1.206 24 C -0.014 4.014 25 C -0.157 4.157 26 C 0.339 3.661 27 O -0.445 6.445 28 O -0.316 6.316 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -6.996 0.739 8.521 11.050 hybrid contribution 1.854 0.493 -0.832 2.091 sum -5.142 1.233 7.689 9.332 Atomic orbital electron populations 1.21743 0.93219 1.03042 1.01753 1.21876 0.98180 0.92599 1.03758 1.22142 0.91311 0.96478 0.87314 0.87676 1.86100 1.47916 1.54637 1.33629 1.19416 0.87856 0.90290 0.95433 1.21498 1.00722 1.05093 0.97428 1.21248 0.94955 0.93610 0.99752 1.21273 1.02240 1.02317 0.92231 1.20067 0.93171 0.94960 0.97030 1.20851 1.02401 0.99254 0.94164 1.20497 1.01461 0.99700 0.97796 1.20827 0.90489 0.78423 0.83309 1.90563 1.67147 1.52014 1.38903 1.43668 1.04139 1.61125 1.09944 1.19354 1.09592 1.34589 0.83958 0.86523 1.25639 0.98096 0.96435 0.95459 1.69657 1.42022 1.41687 0.98559 0.86456 0.81012 0.81175 0.77632 1.19415 1.20932 1.20589 1.21396 0.82740 0.96256 1.01016 1.21584 0.87702 0.99638 1.06755 1.23302 0.91730 0.79948 0.71114 1.90705 1.68139 1.39494 1.46179 1.84495 1.29991 1.35691 1.81456 0.90361 0.93189 0.92176 0.88712 0.91357 0.85323 0.83596 0.83073 0.89593 0.91324 0.89610 0.85646 0.90815 0.91913 0.91747 0.86516 0.85404 0.70894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.64 71.98 0.62 -3.28 16 2 C -0.13 -4.23 5.40 30.60 0.17 -4.07 16 3 C 0.09 3.44 1.75 29.85 0.05 3.50 16 4 H 0.11 4.24 4.70 -2.39 -0.01 4.23 16 5 O -0.31 -12.49 9.02 -73.67 -0.66 -13.16 16 6 C 0.12 4.02 5.73 22.51 0.13 4.15 16 7 C -0.23 -7.20 7.83 22.37 0.18 -7.02 16 8 C -0.08 -1.96 10.04 22.25 0.22 -1.74 16 9 C -0.16 -3.61 9.70 22.28 0.22 -3.40 16 10 C -0.05 -1.25 5.88 -19.88 -0.12 -1.36 16 11 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 12 C -0.18 -5.35 9.64 22.37 0.22 -5.13 16 13 C 0.48 22.29 6.98 87.66 0.61 22.90 16 14 O -0.60 -31.21 16.09 15.72 0.25 -30.96 16 15 N -0.47 -21.36 2.16 -635.53 -1.37 -22.74 16 16 C -0.35 -16.42 8.53 84.04 0.72 -15.70 16 17 H 0.12 5.46 5.43 -2.91 -0.02 5.44 16 18 C 0.05 2.48 5.44 84.93 0.46 2.94 16 19 N -0.88 -45.19 13.96 21.66 0.30 -44.89 16 20 Si 0.91 42.43 24.67 68.60 1.69 44.12 16 21 H -0.27 -12.38 6.73 99.48 0.67 -11.71 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -13.89 6.98 99.48 0.69 -13.19 16 24 C 0.11 4.80 3.36 86.38 0.29 5.09 16 25 C -0.12 -4.18 6.13 29.85 0.18 -3.99 16 26 C 0.50 16.32 8.33 71.23 0.59 16.91 16 27 O -0.55 -21.99 16.74 21.96 0.37 -21.62 16 28 O -0.50 -11.94 13.42 -51.36 -0.69 -12.63 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.43 6.92 -2.38 -0.02 1.41 16 31 H 0.06 1.65 7.09 -2.39 -0.02 1.63 16 32 H 0.09 3.28 5.65 -2.39 -0.01 3.27 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.13 4.19 4.65 -2.91 -0.01 4.17 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.09 8.08 -2.38 -0.02 1.08 16 39 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 40 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 42 H 0.06 2.92 2.89 -2.39 -0.01 2.91 16 43 H 0.06 3.04 7.32 -2.38 -0.02 3.03 16 44 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 46 H 0.43 5.91 9.10 -74.05 -0.67 5.23 16 Total: -1.00 -67.17 373.41 5.45 -61.72 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.31 Total: 31.44 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.25 Total: 8.73 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -1.07 Total: -67.62 kcal Atomic # 8 Polarization: -77.64 SS G_CDS: -0.73 Total: -78.37 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.69 Total: 44.12 kcal Total: -67.17 5.45 -61.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595357238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.311 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds