Wall clock time and date at job start Tue Mar 31 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53012 * 109.46987 * 2 1 4 4 C 1.53006 * 109.46740 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47127 * 60.00123 * 4 3 2 6 6 N 1.46500 * 109.46546 * 179.97438 * 4 3 2 7 7 C 1.34771 * 119.99724 * 179.97438 * 6 4 3 8 8 O 1.21285 * 120.00080 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00226 * 180.02562 * 7 6 4 10 10 C 1.50702 * 109.47393 * 179.97438 * 9 7 6 11 11 C 1.38319 * 119.96705 * 269.72174 * 10 9 7 12 12 C 1.38280 * 120.14038 * 179.76213 * 11 10 9 13 13 C 1.38127 * 120.06375 * 0.51749 * 12 11 10 14 14 C 1.38858 * 119.93231 * 359.74330 * 13 12 11 15 15 O 1.35749 * 120.06720 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00193 * 354.48486 * 15 14 13 17 17 H 1.07998 * 120.00172 * 5.05662 * 16 15 14 18 18 C 1.38661 * 120.00113 * 185.06152 * 16 15 14 19 19 N 1.31557 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47401 * 59.99790 * 20 18 16 22 22 H 1.48499 * 109.47173 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47117 * 299.99845 * 20 18 16 24 24 C 1.38081 * 119.96287 * 90.00185 * 10 9 7 25 25 C 1.50699 * 109.46962 * 299.99931 * 4 3 2 26 26 O 1.20826 * 120.00080 * 95.00625 * 25 4 3 27 27 O 1.34230 * 119.99601 * 274.99916 * 25 4 3 28 28 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 300.00439 * 1 2 3 30 30 H 1.09008 * 109.46758 * 59.99933 * 1 2 3 31 31 H 1.09000 * 109.47354 * 239.99848 * 2 1 3 32 32 H 1.08999 * 109.47111 * 119.99621 * 2 1 3 33 33 H 1.09000 * 109.47197 * 59.99752 * 3 2 1 34 34 H 1.08999 * 109.46886 * 299.99759 * 3 2 1 35 35 H 1.08999 * 109.47350 * 59.99493 * 5 4 3 36 36 H 1.08997 * 109.47183 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47413 * 299.99654 * 5 4 3 38 38 H 0.97002 * 120.00321 * 0.02562 * 6 4 3 39 39 H 1.08999 * 109.47267 * 300.00019 * 9 7 6 40 40 H 1.09000 * 109.46965 * 60.00095 * 9 7 6 41 41 H 1.07995 * 119.93260 * 0.02562 * 11 10 9 42 42 H 1.07996 * 119.97072 * 180.25558 * 12 11 10 43 43 H 1.08000 * 120.03408 * 179.76074 * 13 12 11 44 44 H 0.96995 * 120.00133 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.03711 * 359.95542 * 24 10 9 46 46 H 0.96707 * 116.99464 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 0.0006 5 6 4.0805 0.7212 -1.2482 6 7 4.0583 2.8238 0.0000 7 6 5.3833 3.0701 0.0010 8 8 6.1715 2.1482 0.0018 9 6 5.8857 4.4909 0.0009 10 6 7.3927 4.4909 0.0027 11 6 8.0822 4.4973 1.2018 12 6 9.4650 4.4923 1.2076 13 6 10.1620 4.4918 0.0151 14 6 9.4727 4.4909 -1.1903 15 8 10.1550 4.4909 -2.3639 16 6 11.4963 4.6073 -2.2922 17 1 11.9872 4.6129 -1.3302 18 6 12.2455 4.7200 -3.4535 19 7 11.6476 4.7129 -4.6253 20 14 14.1038 4.8821 -3.3541 21 1 14.6693 3.6877 -2.6769 22 1 14.6656 4.9857 -4.7248 23 1 14.4537 6.1011 -2.5818 24 6 8.0838 4.4904 -1.1928 25 6 4.0718 0.7323 1.2314 26 8 4.3592 -0.4400 1.1775 27 8 4.1995 1.4022 2.3876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9565 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7176 1.2348 -2.1385 36 1 5.1705 0.7215 -1.2480 37 1 3.7172 -0.3065 -1.2483 38 1 3.4280 3.5611 -0.0003 39 1 5.5231 5.0044 -0.8895 40 1 5.5217 5.0049 0.8905 41 1 7.5395 4.5018 2.1354 42 1 10.0005 4.4932 2.1454 43 1 11.2420 4.4919 0.0202 44 1 12.1717 4.7913 -5.4377 45 1 7.5449 4.4893 -2.1287 46 1 4.5256 0.9042 3.1498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595546743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:57 Heat of formation + Delta-G solvation = -139.418932 kcal Electronic energy + Delta-G solvation = -28944.097372 eV Core-core repulsion = 24799.305229 eV Total energy + Delta-G solvation = -4144.792144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17968 -39.53984 -38.73271 -37.12102 -36.38313 -36.05692 -34.02584 -32.43574 -32.07856 -30.67845 -29.11789 -27.27915 -26.98747 -25.23150 -24.82038 -22.77556 -21.64159 -21.19770 -20.20427 -20.04135 -18.28574 -17.68537 -17.31674 -17.13491 -16.79325 -15.85096 -15.75289 -15.34917 -14.91437 -14.71101 -14.37315 -14.33484 -14.02470 -13.87039 -13.70489 -13.42284 -13.37235 -12.90738 -12.65513 -12.45245 -12.43332 -12.27410 -12.09404 -11.80659 -11.68531 -11.61988 -11.50428 -11.48496 -11.22049 -11.01211 -10.79549 -10.74076 -10.67143 -10.57798 -10.42504 -9.69138 -9.34182 -9.29086 -8.78425 -8.01971 -7.16576 -6.39240 -3.98172 2.01099 2.14942 2.44223 2.59015 2.89616 3.04611 3.16769 3.18319 3.20383 4.01264 4.16106 4.37936 4.51023 4.60039 4.73711 4.88874 5.00205 5.04531 5.15107 5.16220 5.19038 5.26968 5.30438 5.39214 5.51611 5.54035 5.61470 5.66815 5.71085 5.73524 5.79305 5.87564 5.98193 6.13346 6.22304 6.23126 6.38553 6.39612 6.70577 6.96731 7.12162 7.31178 7.33569 7.42164 7.49275 7.77025 7.87959 8.05868 8.22604 9.06477 9.77631 10.79036 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002399 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.690676 B =11666.523645 C =12169.663565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.120 4.120 4 C 0.194 3.806 5 C -0.161 4.161 6 N -0.727 5.727 7 C 0.518 3.482 8 O -0.510 6.510 9 C -0.091 4.091 10 C -0.034 4.034 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.154 3.846 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C 0.486 3.514 26 O -0.506 6.506 27 O -0.511 6.511 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.405 0.595 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.114 0.886 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 -3.001 11.017 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.158 4.158 4 C 0.106 3.894 5 C -0.219 4.219 6 N -0.383 5.383 7 C 0.305 3.695 8 O -0.383 6.383 9 C -0.131 4.131 10 C -0.034 4.034 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.193 4.193 25 C 0.326 3.674 26 O -0.393 6.393 27 O -0.322 6.322 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.240 0.760 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -21.563 -3.793 10.167 24.140 hybrid contribution 0.957 0.070 0.693 1.184 sum -20.607 -3.722 10.860 23.589 Atomic orbital electron populations 1.21748 0.95007 1.02061 1.01932 1.21650 0.96433 0.95233 1.03504 1.21912 0.90190 0.99324 1.04387 1.20162 0.95275 0.83028 0.90963 1.22242 1.04914 1.00650 0.94069 1.46100 1.07749 1.06561 1.77894 1.20873 0.81307 0.92275 0.75017 1.90768 1.54902 1.45992 1.46631 1.20572 0.94686 0.93107 1.04715 1.18636 0.91815 0.99873 0.93125 1.20343 0.94066 1.11017 0.96035 1.20678 0.93848 0.98014 0.96800 1.21177 1.00553 1.11098 0.92140 1.19276 0.91487 0.92557 0.86585 1.83973 1.20799 1.78781 1.24761 1.21264 0.78662 1.52139 0.94635 0.89201 1.25271 1.00408 0.96658 0.94208 1.70029 1.36319 1.46248 0.97418 0.85792 0.80714 0.79155 0.77825 1.19547 1.20321 1.19541 1.19939 0.91554 1.10661 0.97170 1.23621 0.73632 0.85686 0.84459 1.90708 1.45812 1.17668 1.85078 1.84523 1.79095 1.47703 1.20898 0.92370 0.92691 0.92403 0.90584 0.91646 0.90203 0.89113 0.90803 0.89367 0.90267 0.75984 0.88070 0.88164 0.87957 0.87523 0.85649 0.92062 0.86833 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.13 -0.93 5.27 -26.72 -0.14 -1.07 16 3 C -0.12 -0.79 4.37 -26.72 -0.12 -0.91 16 4 C 0.19 1.99 0.80 -132.97 -0.11 1.88 16 5 C -0.16 -1.89 7.58 37.15 0.28 -1.61 16 6 N -0.73 -7.07 4.88 -48.68 -0.24 -7.31 16 7 C 0.52 7.23 7.15 -10.99 -0.08 7.15 16 8 O -0.51 -9.67 13.24 5.55 0.07 -9.60 16 9 C -0.09 -1.17 5.83 -29.04 -0.17 -1.34 16 10 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 11 C -0.20 -3.56 9.70 -39.54 -0.38 -3.94 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 14 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 16 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 20 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.17 -3.81 9.65 -39.40 -0.38 -4.19 16 25 C 0.49 6.16 4.80 36.01 0.17 6.34 16 26 O -0.51 -7.86 16.22 -18.75 -0.30 -8.16 16 27 O -0.51 -5.44 13.03 -39.26 -0.51 -5.95 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.08 0.56 6.43 -51.93 -0.33 0.23 16 32 H 0.06 0.57 6.82 -51.93 -0.35 0.22 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.39 6.17 -51.93 -0.32 1.07 16 37 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 38 H 0.40 2.43 8.47 -40.82 -0.35 2.08 16 39 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 46 H 0.41 2.90 9.10 45.56 0.41 3.32 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -37.50 383.44 -6.91 -44.40 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.61 Total: 8.25 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.83 Total: -13.01 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.52 Total: -32.42 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.74 Total: -28.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.50 -6.91 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595546743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.017 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds